Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6272
Gene name Gene Name - the full gene name approved by the HGNC.
Sortilin 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SORT1
Synonyms (NCBI Gene) Gene synonyms aliases
Gp95, LDLCQ6, NT3, NTR3
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1p13.3|1p21.3-p13.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the VPS10-related sortilin family of proteins. The encoded preproprotein is proteolytically processed by furin to generate the mature receptor. This receptor plays a role in the trafficking of different proteins to either the
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT025550 hsa-miR-34a-5p Proteomics 21566225
MIRT046808 hsa-miR-222-3p CLASH 23622248
MIRT045915 hsa-miR-125b-5p CLASH 23622248
MIRT439561 hsa-miR-218-5p HITS-CLIP 23212916
MIRT439560 hsa-miR-376a-3p HITS-CLIP 24374217
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001503 Process Ossification IEA
GO:0005515 Function Protein binding IPI 10085125, 11390366, 14985763, 16787399, 18687776, 19122660, 20584990, 20676133, 21092856, 21102451, 21949853, 22431521, 23236149, 24070898, 24128306, 25401472, 28541286, 32296183, 32814053
GO:0005764 Component Lysosome IDA 28541286
GO:0005765 Component Lysosomal membrane IEA
GO:0005769 Component Early endosome IDA 11331584
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
602458 11186 ENSG00000134243
Protein
UniProt ID Q99523
Protein name Sortilin (100 kDa NT receptor) (Glycoprotein 95) (Gp95) (Neurotensin receptor 3) (NT3) (NTR3)
Protein function Functions as a sorting receptor in the Golgi compartment and as a clearance receptor on the cell surface. Required for protein transport from the Golgi apparatus to the lysosomes by a pathway that is independent of the mannose-6-phosphate recept
PDB 3F6K , 3G2U , 3G2V , 4MSL , 4N7E , 4PO7 , 5MRH , 5MRI , 6EHO , 6X3L , 6X48 , 6X4H , 8T8R , 8T8S
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF15902 Sortilin-Vps10 142 572 Sortilin, neurotensin receptor 3, Domain
PF15901 Sortilin_C 574 740 Sortilin, neurotensin receptor 3, C-terminal Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in brain and prostate (at protein level). Expressed at high levels in brain, spinal cord, heart, skeletal muscle, thyroid, placenta and testis. Expressed at lower levels in lymphoid organs, kidney, colon and liver. {ECO:00002
Sequence
MERPWGAADGLSRWPHGLGLLLLLQLLPPSTLSQDRLDAPPPPAAPLPRWSGPIGVSWGL
RAAAAGGAFPRGGRWRRSAPGEDEECGRVRDFVAKLANNTHQHVFDDLRGSVSLSWVGDS
TGVILVLTTFHVPLVIMTFGQSKLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSG
KVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLPFHPLTQMMYSPQNSDYLLALSTENGLW
VSKNFGGKWEEIHKAVCLAKWGSDNTIFFTTYANGSCKADLGALELWRTSDLGKSFKTIG
VKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDM
VFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYITSVLS
EDNSIQTMITFDQGGRWTHLRKPENSECDATAKNKNECSLHIHASYSISQKLNVPMAPLS
EPNAVGIVIAHGSVGDAISVMVPDVYISDDGGYSWTKMLEGPHYYTILDSGGIIVAIEHS
SRPINVIKFSTDEGQCWQTYTFTRDPIYFTGL
ASEPGARSMNISIWGFTESFLTSQWVSY
TIDFKDILERNCEEKDYTIWLAHSTDPEDYEDGCILGYKEQFLRLRKSSVCQNGRDYVVT
KQPSICLCSLEDFLCDFGYYRPENDSKCVEQPELKGHDLEFCLYGREEHLTTNGYRKIPG
DKCQGGVNPVREVKDLKKKC
TSNFLSPEKQNSKSNSVPIILAIVGLMLVTVVAGVLIVKK
YVCGGRFLVHRYSVLQQHAEANGVDGVDALDTASHTNKSGYHDDSDEDLLE
Sequence length 831
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Lysosome
Neurotrophin signaling pathway
Cholesterol metabolism
  Golgi Associated Vesicle Biogenesis
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Cholestasis Cholestasis rs121909103, rs751511532, rs376368459, rs762702807, rs1578490102, rs1578499691, rs1578504946, rs1317656688, rs199791850, rs1452792080, rs1578491039 28453831
Coronary artery disease Coronary Artery Disease rs137852988, rs121918313, rs121918529, rs121918531, rs137852340, rs1555800701, rs1215189537 21378990
Associations from Text Mining
Disease Name Relationship Type References
Acute Coronary Syndrome Associate 38252350
Adenocarcinoma Stimulate 29802376
Alcohol Withdrawal Seizures Associate 30252935
Alzheimer Disease Associate 18938222, 23595767, 23673467, 27392867, 30909233
Alzheimer Disease Stimulate 21245145
Alzheimer Disease Inhibit 27392867
Aortic Aneurysm Abdominal Associate 23535823, 25198969, 37893562
Aortic Aneurysm Familial Abdominal 1 Stimulate 28279970
Arthritis Rheumatoid Associate 35309353
Atherosclerosis Associate 30634965