Gene Gene information from NCBI Gene database.
Entrez ID 6253
Gene name Reticulon 2
Gene symbol RTN2
Synonyms (NCBI Gene)
HMNR11NSP2NSPL1NSPLISPG12
Chromosome 19
Chromosome location 19q13.32
Summary This gene belongs to the family of reticulon encoding genes. Reticulons are associated with the endoplasmic reticulum, and are involved in neuroendocrine secretion or in membrane trafficking in neuroendocrine cells. Reticulon proteins also play an importa
SNPs SNP information provided by dbSNP.
6
SNP ID Visualize variation Clinical significance Consequence
rs140494585 G>A Pathogenic Missense variant, coding sequence variant
rs763387041 ->G Pathogenic Genic upstream transcript variant, upstream transcript variant, coding sequence variant, frameshift variant
rs768449676 A>- Pathogenic Genic upstream transcript variant, frameshift variant, coding sequence variant, upstream transcript variant, intron variant
rs1568624823 ATAGCTGTTCC>- Likely-pathogenic Upstream transcript variant, coding sequence variant, genic upstream transcript variant, intron variant, splice acceptor variant
rs1568625691 G>A Likely-pathogenic Genic upstream transcript variant, coding sequence variant, stop gained, upstream transcript variant
miRNA miRNA information provided by mirtarbase database.
207
miRTarBase ID miRNA Experiments Reference
MIRT018584 hsa-miR-335-5p Microarray 18185580
MIRT019899 hsa-miR-375 Microarray 20215506
MIRT050482 hsa-miR-20a-5p CLASH 23622248
MIRT054871 hsa-miR-125a-5p qRT-PCR 24675842
MIRT685901 hsa-miR-106a-5p HITS-CLIP 23313552
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
36
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 15286784, 22232211, 25612671, 33961781, 35271311
GO:0005737 Component Cytoplasm IEA
GO:0005783 Component Endoplasmic reticulum IDA 22232211
GO:0005783 Component Endoplasmic reticulum IEA
GO:0005789 Component Endoplasmic reticulum membrane IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603183 10468 ENSG00000125744
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O75298
Protein name Reticulon-2 (Neuroendocrine-specific protein-like 1) (NSP-like protein 1) (Neuroendocrine-specific protein-like I) (NSP-like protein I) (NSPLI)
Protein function Inhibits amyloid precursor protein processing, probably by blocking BACE1 activity (PubMed:15286784). Enhances trafficking of the glutamate transporter SLC1A1/EAAC1 from the endoplasmic reticulum to the cell surface (By similarity). Plays a role
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02453 Reticulon 345 509 Reticulon Family
Tissue specificity TISSUE SPECIFICITY: [Isoform RTN2-C]: Highly expressed in skeletal muscle. {ECO:0000269|PubMed:9693037}.
Sequence
MGQVLPVFAHCKEAPSTASSTPDSTEGGNDDSDFRELHTAREFSEEDEEETTSQDWGTPR
ELTFSYIAFDGVVGSGGRRDSTARRPRPQGRSVSEPRDQHPQPSLGDSLESIPSLSQSPE
PGRRGDPDTAPPSERPLEDLRLRLDHLGWVARGTGSGEDSSTSSSTPLEDEEPQEPNRLE
TGEAGEELDLRLRLAQPSSPEVLTPQLSPGSGTPQAGTPSPSRSRDSNSGPEEPLLEEEE
KQWGPLEREPVRGQCLDSTDQLEFTVEPRLLGTAMEWLKTSLLLAVYKTVPILELSPPLW
TAIGWVQRGPTPPTPVLRVLLKWAKSPRSSGVPSLSLGADMGSKVADLLYWKDTRTSGVV
FTGLMVSLLCLLHFSIVSVAAHLALLLLCGTISLRVYRKVLQAVHRGDGANPFQAYLDVD
LTLTREQTERLSHQITSRVVSAATQLRHFFLVEDLVDSLKLALLFYILTFVGAIFNGLTL
LILGVIGLFTIPLLYRQHQAQIDQYVGLV
TNQLSHIKAKIRAKIPGTGALASAAAAVSGS
KAKAE
Sequence length 545
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
292
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Hereditary spastic paraplegia 12 Likely pathogenic; Pathogenic rs1162797495, rs2513740146, rs1968243327, rs763387041, rs1968241252 RCV001780309
RCV003133821
RCV004584291
RCV000023259
RCV001330101
Neuronopathy, distal hereditary motor, autosomal recessive 11, with spasticity Pathogenic rs2513743643, rs2513742001, rs561968273, rs763387041 RCV004584292
RCV004584293
RCV004584294
RCV004584177
Spastic paraplegia Pathogenic; Likely pathogenic rs758370815, rs1162797495, rs1968087179, rs2513740146, rs1968241252 RCV001386989
RCV001382027
RCV001973738
RCV005099302
RCV001201850
Thyroid cancer, nonmedullary, 1 Likely pathogenic rs1421302939 RCV005910905
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Benign; Likely benign rs143937661 RCV005894830
Adrenocortical carcinoma, hereditary Benign; Likely benign rs139232850 RCV005895306
Cervical cancer Benign; Likely benign rs139232850 RCV005895307
Cholangiocarcinoma Benign rs62109645, rs6509218 RCV005917950
RCV005902207
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Lymphatic Metastasis Stimulate 35428758
Motor Neuron Disease Associate 22232211
Muscle Hypertonia Associate 35684947
Neoplasm Metastasis Stimulate 35428758
Neoplasms Stimulate 35428758
Neoplasms Associate 36177918
Ovarian Neoplasms Stimulate 36177918
Seizures Associate 35684947
Signs and Symptoms Associate 35684947
Spastic paraplegia 12 autosomal dominant Associate 22232211, 35684947