Gene Gene information from NCBI Gene database.
Entrez ID 6117
Gene name Replication protein A1
Gene symbol RPA1
Synonyms (NCBI Gene)
HSSBMST075PFBMFT6REPA1RF-ARP-ARPA70
Chromosome 17
Chromosome location 17p13.3
Summary This gene encodes the largest subunit of the heterotrimeric Replication Protein A (RPA) complex, which binds to single-stranded DNA (ssDNA), forming a nucleoprotein complex that plays an important role in DNA metabolism, being involved in DNA replication,
miRNA miRNA information provided by mirtarbase database.
200
miRTarBase ID miRNA Experiments Reference
MIRT051422 hsa-let-7e-5p CLASH 23622248
MIRT049867 hsa-miR-31-5p CLASH 23622248
MIRT042750 hsa-miR-339-5p CLASH 23622248
MIRT039750 hsa-miR-615-3p CLASH 23622248
MIRT036052 hsa-miR-1301-3p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
71
GO ID Ontology Definition Evidence Reference
GO:0000228 Component Nuclear chromosome IEA
GO:0000723 Process Telomere maintenance IC 16973897, 24747047, 26041456
GO:0000723 Process Telomere maintenance IMP 17959650
GO:0000723 Process Telomere maintenance NAS 17959650
GO:0000724 Process Double-strand break repair via homologous recombination IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
179835 10289 ENSG00000132383
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P27694
Protein name Replication protein A 70 kDa DNA-binding subunit (RP-A p70) (Replication factor A protein 1) (RF-A protein 1) (Single-stranded DNA-binding protein) [Cleaved into: Replication protein A 70 kDa DNA-binding subunit, N-terminally processed]
Protein function As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activ
PDB 1EWI , 1FGU , 1JMC , 1L1O , 2B29 , 2B3G , 4IJH , 4IJL , 4IPC , 4IPD , 4IPG , 4IPH , 4LUO , 4LUV , 4LUZ , 4LW1 , 4LWC , 4NB3 , 4O0A , 4R4C , 4R4I , 4R4O , 4R4Q , 4R4T , 5E7N , 5EAY , 5N85 , 5N8A , 7XUT , 7XUV , 7XUW , 7XV0 , 7XV1 , 7XV4 , 8JZV , 8JZY , 8K00 , 8RK2 , 9J1S , 9MJ5
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF04057 Rep-A_N 5 104 Replication factor-A protein 1, N-terminal domain Domain
PF01336 tRNA_anti-codon 197 286 OB-fold nucleic acid binding domain Domain
PF16900 REPA_OB_2 305 402 Replication protein A OB domain Domain
PF08646 Rep_fac-A_C 461 606 Replication factor-A C terminal domain Family
Sequence
Sequence length 616
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  DNA replication
Nucleotide excision repair
Mismatch repair
Homologous recombination
Fanconi anemia pathway
  Translesion synthesis by REV1
Recognition of DNA damage by PCNA-containing replication complex
Translesion Synthesis by POLH
Removal of the Flap Intermediate from the C-strand
Activation of ATR in response to replication stress
SUMOylation of DNA damage response and repair proteins
Regulation of HSF1-mediated heat shock response
HSF1 activation
Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)
Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)
PCNA-Dependent Long Patch Base Excision Repair
Translesion synthesis by POLK
Translesion synthesis by POLI
Termination of translesion DNA synthesis
HDR through Single Strand Annealing (SSA)
HDR through Homologous Recombination (HRR)
Processing of DNA double-strand break ends
Presynaptic phase of homologous DNA pairing and strand exchange
Formation of Incision Complex in GG-NER
Gap-filling DNA repair synthesis and ligation in GG-NER
Dual Incision in GG-NER
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
Fanconi Anemia Pathway
Regulation of TP53 Activity through Phosphorylation
Activation of the pre-replicative complex
Removal of the Flap Intermediate
G2/M DNA damage checkpoint
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
12
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Pulmonary fibrosis and/or bone marrow failure, telomere-related, 6 Pathogenic rs916648829, rs570041689 RCV001843384
RCV001843385
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
BIPOLAR DISORDER GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Cervical cancer Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Clear cell carcinoma of kidney Uncertain significance ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Ovarian serous cystadenocarcinoma Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References Evidence Score
Abortion Spontaneous Associate 36139348
★☆☆☆☆
Found in Text Mining only
Adenocarcinoma of Lung Associate 19297315, 33535033
★☆☆☆☆
Found in Text Mining only
Adenoma Associate 17109495
★☆☆☆☆
Found in Text Mining only
Alternating hemiplegia of childhood Associate 17959650
★☆☆☆☆
Found in Text Mining only
Alzheimer Disease Inhibit 29474873
★☆☆☆☆
Found in Text Mining only
Anemia Associate 28924235
★☆☆☆☆
Found in Text Mining only
Ataxia Telangiectasia Associate 22948311, 23897887, 8246944, 8986766
★☆☆☆☆
Found in Text Mining only
Autoimmune Diseases Associate 7761458
★☆☆☆☆
Found in Text Mining only
Bone Marrow Diseases Associate 26366868
★☆☆☆☆
Found in Text Mining only
Bone Marrow Failure Disorders Associate 34767620
★☆☆☆☆
Found in Text Mining only