Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
6103
Gene name Gene Name - the full gene name approved by the HGNC.
Retinitis pigmentosa GTPase regulator
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
RPGR
Synonyms (NCBI Gene) Gene synonyms aliases
COD1, CORDX1, CRD, PCDX, RP15, RP3, XLRP3, orf15
Chromosome Chromosome number
X
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
Xp11.4
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a protein with a series of six RCC1-like domains (RLDs), characteristic of the highly conserved guanine nucleotide exchange factors. The encoded protein is found in the Golgi body and interacts with RPGRIP1. This protein localizes to the
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs62638627 C>G,T Not-provided, pathogenic Splice donor variant, genic upstream transcript variant, upstream transcript variant
rs62638632 T>C Pathogenic Splice acceptor variant
rs62638633 T>C Not-provided, pathogenic Splice acceptor variant
rs62638634 C>A Pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs62638637 G>T Not-provided, pathogenic Coding sequence variant, non coding transcript variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT019979 hsa-miR-375 Microarray 20215506
MIRT1315603 hsa-miR-1321 CLIP-seq
MIRT1315604 hsa-miR-134 CLIP-seq
MIRT1315605 hsa-miR-2909 CLIP-seq
MIRT1315606 hsa-miR-3118 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001750 Component Photoreceptor outer segment IBA
GO:0001750 Component Photoreceptor outer segment IDA 12140192
GO:0003723 Function RNA binding HDA 22658674
GO:0005085 Function Guanyl-nucleotide exchange factor activity IEA
GO:0005085 Function Guanyl-nucleotide exchange factor activity IMP 20631154
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
312610 10295 ENSG00000156313
Protein
UniProt ID Q92834
Protein name X-linked retinitis pigmentosa GTPase regulator
Protein function Acts as a guanine-nucleotide releasing factor (GEF) for RAB8A and RAB37 by promoting the conversion of inactive RAB-GDP to the active form RAB-GTP (PubMed:20631154). GEF activity towards RAB8A may facilitate ciliary trafficking by modulating cil
PDB 4JHN , 4JHP , 4QAM
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00415 RCC1 53 102 Regulator of chromosome condensation (RCC1) repeat Repeat
PF00415 RCC1 158 205 Regulator of chromosome condensation (RCC1) repeat Repeat
PF00415 RCC1 208 258 Regulator of chromosome condensation (RCC1) repeat Repeat
PF00415 RCC1 260 310 Regulator of chromosome condensation (RCC1) repeat Repeat
PF00415 RCC1 314 364 Regulator of chromosome condensation (RCC1) repeat Repeat
Tissue specificity TISSUE SPECIFICITY: Heart, brain, placenta, lung, liver, muscle, kidney, retina, pancreas and fetal retinal pigment epithelium. Isoform 3 is found only in the retina. Colocalizes with RPGRIP1 in the outer segment of rod photoreceptors and cone outer segme
Sequence
MREPEELMPDSGAVFTFGKSKFAENNPGKFWFKNDVPVHLSCGDEHSAVVTGNNKLYMFG
SNNWGQLGLGSKSAISKPTCVKALKPEKVKLAACGRNHTLVS
TEGGNVYATGGNNEGQLG
LGDTEERNTFHVISFFTSEHKIKQLSAGSNTSAALTEDGRLFMWGDNSEGQIGLKNVSNV
CVPQQVTIGKPVSWISCGYYHSAFV
TTDGELYVFGEPENGKLGLPNQLLGNHRTPQLVSE
IPEKVIQVACGGEHTVVL
TENAVYTFGLGQFGQLGLGTFLFETSEPKVIENIRDQTISYI
SCGENHTALI
TDIGLMYTFGDGRHGKLGLGLENFTNHFIPTLCSNFLRFIVKLVACGGCH
MVVF
AAPHRGVAKEIEFDEINDTCLSVATFLPYSSLTSGNVLQRTLSARMRRRERERSPD
SFSMRRTLPPIEGTLGLSACFLPNSVFPRCSERNLQESVLSEQDLMQPEEPDYLLDEMTK
EAEIDNSSTVESLGETTDILNMTHIMSLNSNEKSLKLSPVQKQKKQQTIGELTQDTALTE
NDDSDEYEEMSEMKEGKACKQHVSQGIFMTQPATTIEAFSDEEVGNDTGQVGPQADTDGE
GLQKEVYRHENNNGVDQLDAKEIEKESDGGHSQKESEAEEIDSEKETKLAEIAGMKDLRE
REKSTKKMSPFFGNLPDRGMNTESEENKDFVKKRESCKQDVIFDSERESVEKPDSYMEGA
SESQQGIADGFQQPEAIEFSSGEKEDDEVETDQNIRYGRKLIEQGNEKETKPIISKSMAK
YDFKCDRLSEIPEEKEGAEDSKGNGIEEQEVEANEENVKVHGGRKEKTEILSDDLTDKAE
DHEFSKTEELKLEDVDEEINAENVESKKKTVGDDESVPTGYHSKTEGAERTNDDSSAETI
EKKEKANLEERAICEYNENPKGYMLDDADSSSLEILENSETTPSKDMKKTKKIFLFKRVP
SINQKIVKNNNEPLPEIKSIGDQIILKSDNKDADQNHMSQNHQNIPPTNTERRSKSCTIL
Sequence length 1020
Interactions View interactions
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Ciliary dyskinesia primary ciliary dyskinesia rs1569235565, rs1060501181, rs62638639, rs1555961832, rs2067451355, rs62638634, rs62635009, rs2067172824, rs62638655, rs2067144007, rs62635002, rs2067876063, rs606231181, rs2067182636, rs62638642
View all (82 more)
N/A
Cone Dystrophy cone dystrophy rs606231181, rs606231180 N/A
Cone-rod dystrophy X-linked cone-rod dystrophy 1 rs398122960, rs62653029, rs1186795749, rs1601972449, rs281865297, rs606231180, rs137852551, rs771214648, rs606231181, rs62635009 N/A
Macular Degeneration, X-Linked macular degeneration, x-linked atrophic rs2067140471, rs2067114709, rs771214648 N/A
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Amaurosis congenita of Leber type 1 Associate 33712029
Aphasia Conduction Associate 35704304, 36562395
Blindness Associate 21857984
Breast Neoplasms Associate 26474971
Cataract Associate 30313097
Choroideremia Associate 28112135, 32970112
Ciliary Motility Disorders Associate 33355362
Ciliopathies Associate 29526738, 33355362
Color Vision Defects Associate 20579627
Cone Dystrophy Associate 20579627, 21866333, 24454928, 27620828, 31775781, 33805381, 36445968, 38069202, 8123616