Gene Gene information from NCBI Gene database.
Entrez ID 6101
Gene name RP1 axonemal microtubule associated
Gene symbol RP1
Synonyms (NCBI Gene)
DCDC4AORP1
Chromosome 8
Chromosome location 8q11.23-q12.1
Summary This gene encodes a member of the doublecortin family. The protein encoded by this gene contains two doublecortin domains, which bind microtubules and regulate microtubule polymerization. The encoded protein is a photoreceptor microtubule-associated prote
SNPs SNP information provided by dbSNP.
71
SNP ID Visualize variation Clinical significance Consequence
rs104894082 C>T Pathogenic Coding sequence variant, intron variant, stop gained, genic upstream transcript variant
rs104894083 C>T Pathogenic Coding sequence variant, intron variant, stop gained, genic upstream transcript variant
rs118031911 C>T Uncertain-significance, likely-pathogenic Genic upstream transcript variant, coding sequence variant, stop gained, intron variant
rs142600056 C>T Likely-benign, conflicting-interpretations-of-pathogenicity Synonymous variant, genic upstream transcript variant, coding sequence variant
rs146256526 T>C Conflicting-interpretations-of-pathogenicity Coding sequence variant, genic upstream transcript variant, missense variant, intron variant
miRNA miRNA information provided by mirtarbase database.
1
miRTarBase ID miRNA Experiments Reference
MIRT018673 hsa-miR-335-5p Microarray 18185580
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
CREB1 Unknown 11593399
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
47
GO ID Ontology Definition Evidence Reference
GO:0001750 Component Photoreceptor outer segment IEA
GO:0001750 Component Photoreceptor outer segment ISS
GO:0001917 Component Photoreceptor inner segment IDA 11773008
GO:0001917 Component Photoreceptor inner segment IEA
GO:0005515 Function Protein binding IPI 21148103
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
603937 10263 ENSG00000104237
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P56715
Protein name Oxygen-regulated protein 1 (Retinitis pigmentosa 1 protein) (Retinitis pigmentosa RP1 protein)
Protein function Microtubule-associated protein regulating the stability and length of the microtubule-based axoneme of photoreceptors. Required for the differentiation of photoreceptor cells, it plays a role in the organization of the outer segment of rod and c
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF03607 DCX 54 112 Doublecortin Family
PF03607 DCX 171 227 Doublecortin Family
Tissue specificity TISSUE SPECIFICITY: Expressed in retina. Not expressed in heart, brain, placenta, lung, liver, skeletal muscle, kidney, spleen and pancreas.
Sequence
MSDTPSTGFSIIHPTSSEGQVPPPRHLSLTHPVVAKRISFYKSGDPQFGGVRVVVNPRSF
KSFDALLDNLSRKVPLPFGVRNISTPRGRHSITRLEELEDGESYLCSHGRKV
QPVDLDKA
RRRPRPWLSSRAISAHSPPHPVAVAAPGMPRPPRSLVVFRNGDPKTRRAVLLSRRVTQSF
EAFLQHLTEVMQRPVVKLYATDGRRVPSLQAVILSSGAVVAAGREPF
KPGNYDIQKYLLP
ARLPGISQRVYPKGNAKSESRKISTHMSSSSRSQIYSVSSEKTHNNDCYLDYSFVPEKYL
ALEKNDSQNLPIYPSEDDIEKSIIFNQDGTMTVEMKVRFRIKEEETIKWTTTVSKTGPSN
NDEKSEMSFPGRTESRSSGLKLAACSFSADVSPMERSSNQEGSLAEEINIQMTDQVAETC
SSASWENATVDTDIIQGTQDQAKHRFYRPPTPGLRRVRQKKSVIGSVTLVSETEVQEKMI
GQFSYSEERESGENKSEYHMFTHSCSKMSSVSNKPVLVQINNNDQMEESSLERKKENSLL
KSSAISAGVIEITSQKMLEMSHNNGLPSTISNNSIVEEDVVDCVVLDNKTGIKNFKTYGN
TNDRFSPISADATHFSSNNSGTDKNISEAPASEASSTVTARIDRLINEFAQCGLTKLPKN
EKKILSSVASKKKKKSRQQAINSRYQDGQLATKGILNKNERINTKGRITKEMIVQDSDSP
LKGGILCEEDLQKSDTVIESNTFCSKSNLNSTISKNFHRNKLNTTQNSKVQGLLTKRKSR
SLNKISLGAPKKREIGQRDKVFPHNESKYCKSTFENKSLFHVFNILEQKPKDFYAPQSQA
EVASGYLRGMAKKSLVSKVTDSHITLKSQKKRKGDKVKASAILSKQHATTRANSLASLKK
PDFPEAIAHHSIQNYIQSWLQNINPYPTLKPIKSAPVCRNETSVVNCSNNSFSGNDPHTN
SGKISNFVMESNKHITKIAGLTGDNLCKEGDKSFIANDTGEEDLHETQVGSLNDAYLVPL
HEHCTLSQSAINDHNTKSHIAAEKSGPEKKLVYQEINLARKRQSVEAAIQVDPIEEETPK
DLLPVLMLHQLQASVPGIHKTQNGVVQMPGSLAGVPFHSAICNSSTNLLLAWLLVLNLKG
SMNSFCQVDAHKATNKSSETLALLEILKHIAITEEADDLKAAVANLVESTTSHFGLSEKE
QDMVPIDLSANCSTVNIQSVPKCSENERTQGISSLDGGCSASEACAPEVCVLEVTCSPCE
MCTVNKAYSPKETCNPSDTFFPSDGYGVDQTSMNKACFLGEVCSLTDTVFSDKACAQKEN
HTYEGACPIDETYVPVNVCNTIDFLNSKENTYTDNLDSTEELERGDDIQKDLNILTDPEY
KNGFNTLVSHQNVSNLSSCGLCLSEKEAELDKKHSSLDDFENCSLRKFQDENAYTSFDME
EPRTSEEPGSITNSMTSSERNISELESFEELENHDTDIFNTVVNGGEQATEELIQEEVEA
SKTLELIDISSKNIMEEKRMNGIIYEIISKRLATPPSLDFCYDSKQNSEKETNEGETKMV
KMMVKTMETGSYSESSPDLKKCIKSPVTSDWSDYRPDSDSEQPYKTSSDDPNDSGELTQE
KEYNIGFVKRAIEKLYGKADIIKPSFFPGSTRKSQVCPYNSVEFQCSRKASLYDSEGQSF
GSSEQVSSSSSMLQEFQEERQDKCDVSAVRDNYCRGDIVEPGTKQNDDSRILTDIEEGVL
IDKGKWLLKENHLLRMSSENPGMCGNADTTSVDTLLDNNSSEVPYSHFGNLAPGPTMDEL
SSSELEELTQPLELKCNYFNMPHGSDSEPFHEDLLDVRNETCAKERIANHHTEEKGSHQS
ERVCTSVTHSFISAGNKVYPVSDDAIKNQPLPGSNMIHGTLQEADSLDKLYALCGQHCPI
LTVIIQPMNEEDRGFAYRKESDIENFLGFYLWMKIHPYLLQTDKNVFREENNKASMRQNL
IDNAIGDIFDQFYFSNTFDLMGKRRKQKRINFLGLEEEGNLKKFQPDLKERFCMNFLHTS
LLVVGNVDSNTQDLSGQTNEIFKAVDENNNLLNNRFQGSRTNLNQVVRENINCHYFFEML
GQACLLDICQVETSLNISNRNILELCMFEGENLFIWEEEDILNLTDLESSREQEDL
Sequence length 2156
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
615
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Autosomal recessive retinitis pigmentosa Likely pathogenic; Pathogenic rs750542962, rs561075447, rs1805984836, rs1805879513, rs1805900125, rs1806088809, rs1806096563, rs1806103875, rs767436678, rs1806144355 RCV001257793
RCV001257794
RCV001257792
RCV001257896
RCV001257897
RCV001257890
RCV001257891
RCV001257892
RCV001257893
RCV001257894
Cone-rod dystrophy Likely pathogenic; Pathogenic rs1365908727 RCV005626318
Retinal disorder Pathogenic; Likely pathogenic rs869320726, rs878853328, rs1806037949 RCV006258912
RCV006253920
RCV006437007
Retinal dystrophy Likely pathogenic; Pathogenic rs775367880, rs1805986090, rs201493928, rs527236105, rs2536575548, rs750542962, rs794727640, rs104894082, rs869320726, rs762951570, rs746359399, rs557432569, rs769156393, rs878853327, rs878853329
View all (57 more)
RCV003888031
RCV003888086
RCV001075254
RCV003888564
RCV004817010
RCV001074391
RCV004794373
RCV001074787
RCV001073327
RCV003888645
RCV000225478
RCV000225662
RCV000225575
RCV000225399
RCV000225395
RCV000225475
RCV000225583
RCV004794383
RCV004818425
RCV003889456
RCV003889458
RCV003889466
RCV003889467
RCV003889469
RCV003889471
RCV003889472
RCV003889473
RCV003889474
RCV003889475
RCV003889477
RCV003889482
RCV003889484
RCV003889485
RCV003889487
RCV003889488
RCV003889496
RCV000504978
RCV003889913
RCV001073948
RCV001075558
RCV004817724
RCV004817748
RCV001075841
RCV001075044
RCV000787688
RCV004818013
RCV004794455
RCV004794467
RCV004818128
RCV001073530
RCV004794472
RCV004818168
RCV004818169
RCV001075166
RCV004813608
RCV001074374
RCV001073978
RCV001074646
RCV001073682
RCV001075478
RCV001074942
RCV001074169
RCV001074884
RCV001074531
RCV001073282
RCV001073411
RCV001075869
RCV001075719
RCV001074919
RCV001074390
RCV004813994
RCV004814034
RCV004814057
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Breast ductal adenocarcinoma Uncertain significance rs869320622 RCV000207233
Familial cancer of breast Uncertain significance rs760740229 RCV005925674
Hypertriglyceridemia 1 Benign; Likely benign rs2293869 RCV001851697
Leber congenital amaurosis 1 Conflicting classifications of pathogenicity rs1554519422 RCV000659269
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Albinism Associate 39596324
Amaurosis congenita of Leber type 1 Associate 33712029
Arthritis Rheumatoid Stimulate 10366101
Atrophy Associate 32565670
Autoimmune Diseases Associate 7610041
Carcinoma Renal Cell Associate 26061684
Cataract Associate 37493686
Choroideremia Associate 23940504
Ciliopathies Associate 31253780, 39596324
Color Vision Defects Associate 23940504