Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
5959
Gene name Gene Name - the full gene name approved by the HGNC.
Retinol dehydrogenase 5
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
RDH5
Synonyms (NCBI Gene) Gene synonyms aliases
9cRDH, HSD17B9, RDH1, SDR9C5
Chromosome Chromosome number
12
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
12q13.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes an enzyme belonging to the short-chain dehydrogenases/reductases (SDR) family. This retinol dehydrogenase functions to catalyze the final step in the biosynthesis of 11-cis retinaldehyde, which is the universal chromophore of visual pigm
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT018312 hsa-miR-335-5p Microarray 18185580
MIRT1299116 hsa-miR-2355-3p CLIP-seq
MIRT1299117 hsa-miR-3973 CLIP-seq
MIRT1299118 hsa-miR-520g CLIP-seq
MIRT1299119 hsa-miR-520h CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001523 Process Retinoid metabolic process IDA 9931293
GO:0001523 Process Retinoid metabolic process TAS
GO:0004745 Function Retinol dehydrogenase activity IDA 11675386
GO:0005788 Component Endoplasmic reticulum lumen IDA 11675386
GO:0005789 Component Endoplasmic reticulum membrane IDA 11675386
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
601617 9940 ENSG00000135437
Protein
UniProt ID Q92781
Protein name Retinol dehydrogenase 5 (EC 1.1.1.209) (EC 1.1.1.315) (EC 1.1.1.53) (11-cis retinol dehydrogenase) (11-cis RDH) (11-cis RoDH) (9-cis retinol dehydrogenase) (9cRDH) (Short chain dehydrogenase/reductase family 9C member 5)
Protein function Catalyzes the oxidation of cis-isomers of retinol, including 11-cis-, 9-cis-, and 13-cis-retinol in an NAD-dependent manner (PubMed:10588954, PubMed:11675386, PubMed:9115228, PubMed:9931293). Has no activity towards all-trans retinal (By similar
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00106 adh_short 29 221 short chain dehydrogenase Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed. In the eye, abundant in the retinal pigment epithelium. {ECO:0000269|PubMed:9115228, ECO:0000269|PubMed:9931293}.
Sequence
Sequence length 318
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Retinol metabolism
Metabolic pathways
  Retinoid cycle disease events
The canonical retinoid cycle in rods (twilight vision)
RA biosynthesis pathway
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Fundus albipunctatus Fundus Albipunctatus, Fundus albipunctatus rs62638191, rs62638193, rs111033593, rs104894373, rs62638194, rs267607006, rs104894374, rs774122562 11675386, 11078852, 15007239, 22736946, 11470705, 22669287, 20829743, 24603341, 10617778, 12967826, 28418496, 21529959, 12788147, 25526675, 11053296
View all (4 more)
Age-related macular degeneration Age related macular degeneration rs199474657, rs61750120, rs1800728, rs62654397, rs61749423, rs61751412, rs61749439, rs61751398, rs61752417, rs62645946, rs1801269, rs62646860, rs61750142, rs61750145, rs61750152
View all (20 more)
26691988
Myopia Myopia rs387907109, rs146936371, rs587776903, rs786205127, rs398122836, rs199624584, rs587777625, rs786205216, rs758872875, rs764211125, rs1135402746, rs765658563, rs1555941129, rs1555941116, rs199923805
View all (6 more)
27182965, 23396134
Retinitis pigmentosa Retinitis Pigmentosa rs267606794, rs200691042, rs397704718, rs202193201, rs267606793, rs2147483647, rs779886453, rs267606691, rs794728002, rs878853253, rs137853189, rs137853190, rs137853112, rs137853113, rs137853114
View all (1830 more)
Unknown
Disease term Disease name Evidence References Source
Hyperopia Hyperopia GWAS
Retinal Detachment Retinal Detachment GWAS
Atrial Fibrillation Atrial Fibrillation GWAS
Associations from Text Mining
Disease Name Relationship Type References
Alzheimer Disease Associate 30535121
Astigmatism Associate 30747064
Carcinogenesis Associate 24376576
Carcinoma Hepatocellular Associate 32788868
Colonic Neoplasms Inhibit 15190067
Colorectal Neoplasms Inhibit 24599561
Cone Rod Dystrophies Associate 29555955
Diabetes Mellitus Type 2 Associate 30535121
Fleck Retina Familial Benign Associate 16637847
Fundus Albipunctatus Associate 10617778, 11153648, 16637847, 22736946, 22815624, 32232344, 34115091, 35148716