Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
59341
Gene name Gene Name - the full gene name approved by the HGNC.
Transient receptor potential cation channel subfamily V member 4
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
TRPV4
Synonyms (NCBI Gene) Gene synonyms aliases
BCYM3, CMT2C, HMSN2C, OTRPC4, SMAL, SPSMA, SSQTL1, TRP12, VRL2, VROAC
Chromosome Chromosome number
12
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
12q24.11
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the OSM9-like transient receptor potential channel (OTRPC) subfamily in the transient receptor potential (TRP) superfamily of ion channels. The encoded protein is a Ca2+-permeable, nonselective cation channel that is thought
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs77975504 C>T Pathogenic Coding sequence variant, missense variant
rs116571438 G>A,T Pathogenic Downstream transcript variant, synonymous variant, genic downstream transcript variant, coding sequence variant, missense variant
rs121912632 C>T Pathogenic Coding sequence variant, missense variant
rs121912633 C>A,T Pathogenic Coding sequence variant, missense variant
rs121912634 T>C Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT018474 hsa-miR-335-5p Microarray 18185580
MIRT1457870 hsa-miR-1207-3p CLIP-seq
MIRT1457871 hsa-miR-1207-5p CLIP-seq
MIRT1457872 hsa-miR-1909 CLIP-seq
MIRT1457873 hsa-miR-3151 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000166 Function Nucleotide binding IEA
GO:0001666 Process Response to hypoxia IEA
GO:0002024 Process Diet induced thermogenesis IEA
GO:0003779 Function Actin binding IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
605427 18083 ENSG00000111199
Protein
UniProt ID Q9HBA0
Protein name Transient receptor potential cation channel subfamily V member 4 (TrpV4) (Osm-9-like TRP channel 4) (OTRPC4) (Transient receptor potential protein 12) (TRP12) (Vanilloid receptor-like channel 2) (Vanilloid receptor-like protein 2) (VRL-2) (Vanilloid recep
Protein function Non-selective calcium permeant cation channel involved in osmotic sensitivity and mechanosensitivity (PubMed:16293632, PubMed:18695040, PubMed:18826956, PubMed:22526352, PubMed:23136043, PubMed:29899501). Activation by exposure to hypotonicity w
PDB 4DX1 , 4DX2 , 7AA5 , 8FC7 , 8FC8 , 8FC9 , 8FCA , 8FCB , 8JU5 , 8JU6 , 8JVI , 8JVJ , 8T1B , 8T1C , 8T1D , 8T1E , 8T1F
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00023 Ank 237 268 Ankyrin repeat Repeat
PF00520 Ion_trans 469 730 Ion transport protein Family
Tissue specificity TISSUE SPECIFICITY: Found in the synoviocytes from patients with (RA) and without (CTR) rheumatoid arthritis (at protein level). {ECO:0000269|PubMed:19759329}.
Sequence
MADSSEGPRAGPGEVAELPGDESGTPGGEAFPLSSLANLFEGEDGSLSPSPADASRPAGP
GDGRPNLRMKFQGAFRKGVPNPIDLLESTLYESSVVPGPKKAPMDSLFDYGTYRHHSSDN
KRWRKKIIEKQPQSPKAPAPQPPPILKVFNRPILFDIVSRGSTADLDGLLPFLLTHKKRL
TDEEFREPSTGKTCLPKALLNLSNGRNDTIPVLLDIAERTGNMREFINSPFRDIYYRGQT
ALHIAIERRCKHYVELLVAQGADVHAQA
RGRFFQPKDEGGYFYFGELPLSLAACTNQPHI
VNYLTENPHKKADMRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLFPDS
NLEAVLNNDGLSPLMMAAKTGKIGIFQHIIRREVTDEDTRHLSRKFKDWAYGPVYSSLYD
LSSLDTCGEEASVLEILVYNSKIENRHEMLAVEPINELLRDKWRKFGAVSFYINVVSYLC
AMVIFTLTAYYQPLEGTPPYPYRTTVDYLRLAGEVITLFTGVLFFFTNIKDLFMKKCPGV
NSLFIDGSFQLLYFIYSVLVIVSAALYLAGIEAYLAVMVFALVLGWMNALYFTRGLKLTG
TYSIMIQKILFKDLFRFLLVYLLFMIGYASALVSLLNPCANMKVCNEDQTNCTVPTYPSC
RDSETFSTFLLDLFKLTIGMGDLEMLSSTKYPVVFIILLVTYIILTFVLLLNMLIALMGE
TVGQVSKESK
HIWKLQWATTILDIERSFPVFLRKAFRSGEMVTVGKSSDGTPDRRWCFRV
DEVNWSHWNQNLGIINEDPGKNETYQYYGFSHTVGRLRRDRWSSVVPRVVELNKNSNPDE
VVVPLDSMGNPRCDGHQQGYPRKWRTDDAPL
Sequence length 871
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Cellular senescence
Inflammatory mediator regulation of TRP channels
Fluid shear stress and atherosclerosis
  TRP channels
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Charcot-Marie-Tooth disease Charcot-Marie-Tooth disease axonal type 2C rs387906905, rs121912637, rs267607146, rs267607149, rs1064795696, rs515726154, rs77975504, rs387906324, rs267607143, rs1289139464, rs387906902, rs267607144, rs121912632, rs515726162, rs121912633
View all (5 more)
N/A
Charcot-Marie-Tooth Disease Charcot-Marie-Tooth Disease rs387906905, rs267607144, rs121912633, rs267607145, rs387906904 N/A
Digital Arthropathy-Brachydactyly familial digital arthropathy-brachydactyly rs387907219, rs387907220, rs515726170 N/A
Distal Spinal Muscular Atrophy distal spinal muscular atrophy rs267607146 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Avascular Necrosis Of Femoral Head familial avascular necrosis of femoral head N/A N/A GenCC
Connective Tissue Disease Connective tissue disorder N/A N/A ClinVar
Neuronopathy neuronopathy, distal hereditary motor, autosomal dominant 8 N/A N/A GenCC
Schizophrenia Schizophrenia N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Alcoholic Neuropathy Associate 21454511
Alzheimer Disease Associate 21658220
Arthritis Rheumatoid Associate 19759329
Arthrogryposis Associate 25900305
Atrial Fibrillation Stimulate 28839241
Bone Diseases Associate 27330106
Bone Diseases Developmental Associate 28687525
Brachyolmia Associate 21658220, 40019039
Brachyolmia Type 3 Associate 18587396, 19232556, 21658220
Brain Edema Associate 33538957