Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
5906
Gene name Gene Name - the full gene name approved by the HGNC.
RAP1A, member of RAS oncogene family
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
RAP1A
Synonyms (NCBI Gene) Gene synonyms aliases
C21KG, G-22K, KREV-1, KREV1, RAP1, SMGP21
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1p13.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the Ras family of small GTPases. The encoded protein undergoes a change in conformational state and activity, depending on whether it is bound to GTP or GDP. This protein is activated by several types of guanine nucleotide ex
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT006958 hsa-miR-337-3p Luciferase reporter assay, qRT-PCR, Western blot 22723956
MIRT051421 hsa-let-7e-5p CLASH 23622248
MIRT554948 hsa-miR-19b-3p PAR-CLIP 21572407
MIRT554947 hsa-miR-19a-3p PAR-CLIP 21572407
MIRT554946 hsa-miR-10a-3p PAR-CLIP 21572407
Transcription factors
Transcription factor Regulation Reference
TWIST1 Repression 19051271
TWIST2 Repression 19051271
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0003924 Function GTPase activity IBA 21873635
GO:0005085 Function Guanyl-nucleotide exchange factor activity ISS
GO:0005515 Function Protein binding IPI 7791872, 8756332, 10608844, 11022048, 11359771, 12845325, 15569673, 16698549, 17916086
GO:0005525 Function GTP binding IBA 21873635
GO:0005737 Component Cytoplasm IDA 11359771, 23209302
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
179520 9855 ENSG00000116473
Protein
UniProt ID P62834
Protein name Ras-related protein Rap-1A (EC 3.6.5.2) (C21KG) (G-22K) (GTP-binding protein smg p21A) (Ras-related protein Krev-1)
Protein function Counteracts the mitogenic function of Ras, at least partly because it can interact with Ras GAPs and RAF in a competitive manner. Together with ITGB1BP1, regulates KRIT1 localization to microtubules and membranes (PubMed:17916086). Plays a role
PDB 1C1Y , 1GUA , 3KUC , 4KVG
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00071 Ras 5 167 Ras family Domain
Sequence
Sequence length 184
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  MAPK signaling pathway
Ras signaling pathway
Rap1 signaling pathway
cAMP signaling pathway
Chemokine signaling pathway
Focal adhesion
Adherens junction
Tight junction
Platelet activation
Leukocyte transendothelial migration
Long-term potentiation
Neurotrophin signaling pathway
Cushing syndrome
Pancreatic secretion
Renal cell carcinoma
Lipid and atherosclerosis
  Frs2-mediated activation
ARMS-mediated activation
Integrin signaling
GRB2:SOS provides linkage to MAPK signaling for Integrins
p130Cas linkage to MAPK signaling for integrins
Glucagon-like Peptide-1 (GLP1) regulates insulin secretion
Rap1 signalling
MAP2K and MAPK activation
Neutrophil degranulation
Signaling by moderate kinase activity BRAF mutants
Signaling by high-kinase activity BRAF mutants
Signaling by BRAF and RAF fusions
Paradoxical activation of RAF signaling by kinase inactive BRAF
MET activates RAP1 and RAC1
Signaling downstream of RAS mutants
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Congenital diaphragmatic hernia Congenital diaphragmatic hernia rs121908602, rs121908604, rs864309713, rs775394591
Congenital ocular coloboma Congenital ocular coloboma (disorder) rs587778875, rs587777249, rs767611891, rs2091986259, rs2091987023, rs2091988799
Cryptorchidism Cryptorchidism rs121912555, rs104894697, rs104894698, rs398122886
Hearing loss Conductive hearing loss, Sensorineural Hearing Loss (disorder) rs267607135, rs267606855, rs779841884, rs267606854, rs28942097, rs121908073, rs121908076, rs74315289, rs121908144, rs111033313, rs74315437, rs121908348, rs121908349, rs121908350, rs397515359
View all (184 more)
Unknown
Disease term Disease name Evidence References Source
Ptosis Blepharoptosis, Ptosis ClinVar
Crohn Disease Crohn Disease GWAS
Moyamoya Disease Moyamoya Disease GWAS
Associations from Text Mining
Disease Name Relationship Type References
Acute Disease Associate 35114361
Adenocarcinoma of Lung Associate 34039311, 37919693
Adenocarcinoma of Lung Inhibit 34446056
Adenoma Associate 30183087
Alzheimer Disease Associate 35011725, 37999404
Arthritis Rheumatoid Inhibit 17009234
Blood Platelet Disorders Associate 23243278, 27235135
Breast Neoplasms Associate 23405264, 33267867, 35197309, 37561760
Cap Myopathy Associate 19470770
Carcinogenesis Associate 19470770, 23219753, 24316969, 25856570