Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
5833
Gene name Gene Name - the full gene name approved by the HGNC.
Phosphate cytidylyltransferase 2, ethanolamine
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PCYT2
Synonyms (NCBI Gene) Gene synonyms aliases
ET, SPG82
Disease Acronyms (UniProt) Disease acronyms from UniProt database
SPG82
Chromosome Chromosome number
17
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
17q25.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes an enzyme that catalyzes the formation of CDP-ethanolamine from CTP and phosphoethanolamine in the Kennedy pathway of phospholipid synthesis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2010]
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs377278120 G>A Pathogenic Non coding transcript variant, stop gained, coding sequence variant
rs778113360 G>A,T Pathogenic Missense variant, non coding transcript variant, coding sequence variant
rs1204173741 G>A Pathogenic Missense variant, coding sequence variant, non coding transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT017368 hsa-miR-335-5p Microarray 18185580
MIRT052191 hsa-let-7b-5p CLASH 23622248
MIRT720608 hsa-miR-4726-3p HITS-CLIP 19536157
MIRT720607 hsa-miR-6789-3p HITS-CLIP 19536157
MIRT720606 hsa-miR-566 HITS-CLIP 19536157
Transcription factors
Transcription factor Regulation Reference
NFKB1 Unknown 18583706
RELA Unknown 18583706
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0004306 Function Ethanolamine-phosphate cytidylyltransferase activity IMP 31637422
GO:0004306 Function Ethanolamine-phosphate cytidylyltransferase activity TAS 9083101
GO:0005515 Function Protein binding IPI 32296183, 32814053
GO:0005575 Component Cellular_component ND
GO:0005789 Component Endoplasmic reticulum membrane TAS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
602679 8756 ENSG00000185813
Protein
UniProt ID Q99447
Protein name Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14) (CTP:phosphoethanolamine cytidylyltransferase) (Phosphorylethanolamine transferase)
Protein function Ethanolamine-phosphate cytidylyltransferase that catalyzes the second step in the synthesis of phosphatidylethanolamine (PE) from ethanolamine via the CDP-ethanolamine pathway (PubMed:31637422, PubMed:9083101). Phosphatidylethanolamine is a domi
PDB 3ELB , 4XSV
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01467 CTP_transf_like 26 152 Cytidylyltransferase-like Domain
PF01467 CTP_transf_like 217 333 Cytidylyltransferase-like Domain
Tissue specificity TISSUE SPECIFICITY: Strongest expression in liver, heart, and skeletal muscle. {ECO:0000269|PubMed:9083101}.
Sequence
Sequence length 389
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Phosphonate and phosphinate metabolism
Glycerophospholipid metabolism
Metabolic pathways
  Synthesis of PE
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
22764088, 31637422
Developmental regression Developmental regression rs1224421127 31637422, 22764088
Mental retardation Intellectual Disability rs5742905, rs267607136, rs267607137, rs2131714307, rs267607038, rs267607042, rs80338685, rs137853127, rs80338815, rs28940893, rs387906309, rs121908096, rs121908099, rs587784365, rs121918315
View all (1024 more)
22764088, 31637422
Unknown
Disease term Disease name Evidence References Source
Spastic tetraparesis Spastic tetraparesis 31637422, 22764088 ClinVar
Spastic Paraplegia spastic paraplegia 82, autosomal recessive GenCC
Associations from Text Mining
Disease Name Relationship Type References
Carcinoma Squamous Cell Inhibit 38157930
Insulin Resistance Associate 29986096
Testicular Germ Cell Tumor Associate 34621245