Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
5830
Gene name Gene Name - the full gene name approved by the HGNC.
Peroxisomal biogenesis factor 5
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PEX5
Synonyms (NCBI Gene) Gene synonyms aliases
PBD2A, PBD2B, PTS1-BP, PTS1R, PXR1, RCDP5
Chromosome Chromosome number
12
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
12p13.31
Summary Summary of gene provided in NCBI Entrez Gene.
The product of this gene binds to the C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) and plays an essential role in peroxisomal protein import. Peroxins (PEXs) are proteins that are essential for the assembly of functional peroxis
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs61752137 C>T Pathogenic Non coding transcript variant, coding sequence variant, stop gained
rs61752138 T>G Pathogenic Missense variant, non coding transcript variant, coding sequence variant
rs111286659 G>A,T Conflicting-interpretations-of-pathogenicity, uncertain-significance Intron variant
rs115760878 G>A,C Conflicting-interpretations-of-pathogenicity Non coding transcript variant, coding sequence variant, synonymous variant
rs138205085 C>T Conflicting-interpretations-of-pathogenicity Non coding transcript variant, coding sequence variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT050469 hsa-miR-22-3p CLASH 23622248
MIRT050249 hsa-miR-25-3p CLASH 23622248
MIRT1225965 hsa-miR-1224-5p CLIP-seq
MIRT1225966 hsa-miR-1272 CLIP-seq
MIRT1225967 hsa-miR-1275 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000038 Process Very long-chain fatty acid metabolic process IEA
GO:0000268 Function Peroxisome targeting sequence binding IDA 18346465
GO:0000425 Process Pexophagy IDA 27597759
GO:0000425 Process Pexophagy IDA 26344566
GO:0001764 Process Neuron migration IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
600414 9719 ENSG00000139197
Protein
UniProt ID P50542
Protein name Peroxisomal targeting signal 1 receptor (PTS1 receptor) (PTS1R) (PTS1-BP) (Peroxin-5) (Peroxisomal C-terminal targeting signal import receptor) (Peroxisome receptor 1)
Protein function Receptor that mediates peroxisomal import of proteins containing a C-terminal PTS1-type tripeptide peroxisomal targeting signal (SKL-type) (PubMed:11101887, PubMed:11336669, PubMed:12456682, PubMed:16314507, PubMed:17157249, PubMed:17428317, Pub
PDB 1FCH , 2C0L , 2C0M , 2J9Q , 2W84 , 3R9A , 4BXU , 4KXK , 4KYO , 7Z0K , 9GAG
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13432 TPR_16 339 403 Family
PF13181 TPR_8 556 589 Tetratricopeptide repeat Repeat
Tissue specificity TISSUE SPECIFICITY: Detected in heart, brain, placenta, lung, liver, skeletal muscle, kidney and pancreas. {ECO:0000269|PubMed:7706321, ECO:0000269|PubMed:7719337, ECO:0000269|PubMed:7790377}.
Sequence
MAMRELVEAECGGANPLMKLAGHFTQDKALRQEGLRPGPWPPGAPASEAASKPLGVASED
ELVAEFLQDQNAPLVSRAPQTFKMDDLLAEMQQIEQSNFRQAPQRAPGVADLALSENWAQ
EFLAAGDAVDVTQDYNETDWSQEFISEVTDPLSVSPARWAEEYLEQSEEKLWLGEPEGTA
TDRWYDEYHPEEDLQHTASDFVAKVDDPKLANSEFLKFVRQIGEGQVSLESGAGSGRAQA
EQWAAEFIQQQGTSDAWVDQFTRPVNTSALDMEFERAKSAIESDVDFWDKLQAELEEMAK
RDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEA
AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ
TALMALAVSFTNESLQR
QACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR
LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE
AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS
ENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGLPQ
Sequence length 639
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Peroxisome   E3 ubiquitin ligases ubiquitinate target proteins
Peroxisomal protein import
Pexophagy
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Zellweger Syndrome peroxisome biogenesis disorder 2b, peroxisome biogenesis disorder 2a (zellweger) rs1565673352, rs61752138, rs61752137, rs1064793563 N/A
rhizomelic chondrodysplasia punctata Rhizomelic chondrodysplasia punctata rs796051881 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Microcephaly microcephaly N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Alcohol Induced Disorders Nervous System Associate 7790377
Carcinoma Hepatocellular Associate 32373215
Carcinoma Squamous Cell Associate 22782350
Neoplasms Associate 25119594
Peroxisomal Disorders Associate 7790377
Peroxisome biogenesis disorders Associate 28521612, 34356630
Zellweger Syndrome Associate 29622767, 34356630, 7790377