Gene Gene information from NCBI Gene database.
Entrez ID 580
Gene name BRCA1 associated RING domain 1
Gene symbol BARD1
Synonyms (NCBI Gene)
-
Chromosome 2
Chromosome location 2q35
Summary This gene encodes a protein which interacts with the N-terminal region of BRCA1. In addition to its ability to bind BRCA1 in vivo and in vitro, it shares homology with the 2 most conserved regions of BRCA1: the N-terminal RING motif and the C-terminal BRC
SNPs SNP information provided by dbSNP.
207
SNP ID Visualize variation Clinical significance Consequence
rs3738885 G>C,T Uncertain-significance, benign, conflicting-interpretations-of-pathogenicity, benign-likely-benign Coding sequence variant, intron variant, missense variant, non coding transcript variant
rs3738888 G>A,T Uncertain-significance, conflicting-interpretations-of-pathogenicity, benign-likely-benign, likely-benign, benign Coding sequence variant, missense variant, genic downstream transcript variant, non coding transcript variant
rs28997576 C>G,T Likely-benign, risk-factor, benign Coding sequence variant, missense variant, intron variant, non coding transcript variant
rs76744638 G>A,C Uncertain-significance, conflicting-interpretations-of-pathogenicity, benign-likely-benign, likely-benign Coding sequence variant, missense variant, non coding transcript variant, genic downstream transcript variant
rs113789798 TT>-,T,TTT,TTTT,TTTTT,TTTTTT Benign, conflicting-interpretations-of-pathogenicity Non coding transcript variant, 3 prime UTR variant, genic downstream transcript variant
miRNA miRNA information provided by mirtarbase database.
42
miRTarBase ID miRNA Experiments Reference
MIRT004138 hsa-miR-192-5p Microarray 16822819
MIRT016283 hsa-miR-193b-3p Microarray 20304954
MIRT024951 hsa-miR-215-5p Microarray 19074876
MIRT004138 hsa-miR-192-5p Microarray 19074876
MIRT437454 hsa-miR-182-5p Luciferase reporter assay 23249749
Transcription factors Transcription factors information provided by TRRUST V2 database.
1
Transcription factor Regulation Reference
BRIP1 Unknown 20451671
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
60
GO ID Ontology Definition Evidence Reference
GO:0000151 Component Ubiquitin ligase complex NAS 14976165
GO:0000152 Component Nuclear ubiquitin ligase complex IDA 14636569
GO:0001894 Process Tissue homeostasis TAS 15782130
GO:0003723 Function RNA binding IDA 12419249
GO:0004842 Function Ubiquitin-protein transferase activity IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601593 952 ENSG00000138376
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q99728
Protein name BRCA1-associated RING domain protein 1 (BARD-1) (EC 2.3.2.27) (RING-type E3 ubiquitin transferase BARD1)
Protein function E3 ubiquitin-protein ligase. The BRCA1-BARD1 heterodimer specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptiona
PDB 1JM7 , 2NTE , 2R1Z , 3C5R , 3FA2 , 6M14 , 7E8I , 7JZV , 7LYB , 7LYC , 8GRQ
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF14835 zf-RING_6 41 105 zf-RING of BARD1-type protein Domain
PF00023 Ank 427 459 Ankyrin repeat Repeat
PF00023 Ank 460 491 Ankyrin repeat Repeat
PF00023 Ank 494 525 Ankyrin repeat Repeat
Sequence
MPDNRQPRNRQPRIRSGNEPRSAPAMEPDGRGAWAHSRAALDRLEKLLRCSRCTNILREP
VCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMI
QLCSKLRNLLHDNEL
SDLKEDKPRKSLFNDAGNKKNSIKMWFSPRSKKVRYVVSKASVQTQPAIKKDASAQQDSY
EFVSPSPPADVSERAKKASARSGKKQKKKTLAEINQKWNLEAEKEDGEFDSKEESKQKLV
SFCSQPSVISSPQINGEIDLLASGSLTESECFGSLTEVSLPLAEQIESPDTKSRNEVVTP
EKVCKNYLTSKKSLPLENNGKRGHHNRLSSPISKRCRTSILSTSGDFVKQTVPSENIPLP
ECSSPPSCKRKVGGTSGRKNSNMSDEFISLSPGTPPSTLSSSSYRRVMSSPSAMKLLPNM
AVKRNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELL
LQHKALVNTTG
YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK
SLLLLPEKNESSSASHCSVMNTGQRRDGPLVLIGSGLSSEQQKMLSELAVILKAKKYTEF
DSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQEEKYEIPEGPRRS
RLNREQLLPKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTV
AYHARPDSDQRFCTQYIIYEDLCNYHPERVRQGKVWKAPSSWFIDCVMSFELLPLDS
Sequence length 777
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Homologous recombination   HDR through Single Strand Annealing (SSA)
HDR through Homologous Recombination (HRR)
UCH proteinases
Metalloprotease DUBs
Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)
Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
Resolution of D-loop Structures through Holliday Junction Intermediates
Nonhomologous End-Joining (NHEJ)
Homologous DNA Pairing and Strand Exchange
Processing of DNA double-strand break ends
Presynaptic phase of homologous DNA pairing and strand exchange
Regulation of TP53 Activity through Phosphorylation
G2/M DNA damage checkpoint
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
7515
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
BARD1-related cancer predisposition Likely pathogenic; Pathogenic rs587782348, rs587780021, rs587780024, rs2106134639, rs587781948, rs587782681, rs2469503276, rs730881411, rs779427628, rs786202500, rs786201912, rs864622223, rs750413473, rs773223671, rs753785671
View all (1 more)
RCV005601772
RCV005359081
RCV005600670
RCV005370020
RCV005600720
RCV005359290
RCV005370200
RCV005359344
RCV005600788
RCV005600780
RCV005600774
RCV005365136
RCV005365150
RCV005357629
RCV005600984
RCV005601058
BARD1-related disorder Pathogenic rs587780021, rs587781707, rs587782681, rs587782897, rs1553622542 RCV003415888
RCV004739436
RCV003945152
RCV004739465
RCV003403349
Breast and/or ovarian cancer Pathogenic; Likely pathogenic rs587780021, rs758972589, rs750413473, rs1234033325 RCV001270956
RCV001270959
RCV001270958
RCV001270957
Breast cancer, susceptibility to Pathogenic rs587781707 RCV000501812
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Benign; Likely benign rs10498022, rs3768709, rs199846428, rs1272210676, rs754486162 RCV005916880
RCV005922159
RCV005912139
RCV005912141
RCV005908927
Carcinoma of colon Conflicting classifications of pathogenicity; Benign; Likely benign; Uncertain significance rs587780014, rs370553043, rs1553612535 RCV000855729
RCV001358102
RCV000855730
Cervical cancer Benign rs3768709 RCV005922161
Cholangiocarcinoma Benign rs10498022 RCV005916883
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adrenal Gland Diseases Associate 26941572
Adrenocortical Carcinoma Associate 25657202
Breast Diseases Associate 36315097
Breast Neoplasms Associate 11278247, 15367667, 16061562, 16672066, 16768547, 16825437, 16957774, 17510055, 21344236, 25428789, 25452441, 25634209, 25740706, 26534844, 26787654
View all (38 more)
Breast Neoplasms Stimulate 32091585
Breast Neoplasms Inhibit 39261728
Carcinogenesis Associate 33629311
Carcinoma Basal Cell Associate 30089731
Carcinoma Hepatocellular Associate 28794477
Carcinoma Non Small Cell Lung Associate 33439503, 37704455