Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
58
Gene name Gene Name - the full gene name approved by the HGNC.
Actin alpha 1, skeletal muscle
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
ACTA1
Synonyms (NCBI Gene) Gene synonyms aliases
ACTA, ASMA, CFTD, CFTD1, CFTDM, CMYO2A, CMYO2B, CMYO2C, CMYP2A, CMYP2B, CMYP2C, MPFD, NEM1, NEM2, NEM3, SHPM
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q42.13
Summary Summary of gene provided in NCBI Entrez Gene.
The product encoded by this gene belongs to the actin family of proteins, which are highly conserved proteins that play a role in cell motility, structure and integrity. Alpha, beta and gamma actin isoforms have been identified, with alpha actins being a
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs111812550 C>G,T Pathogenic Splice donor variant
rs112919437 T>C,G Likely-pathogenic Splice acceptor variant
rs121909519 A>G Pathogenic Missense variant, coding sequence variant
rs121909520 T>C Pathogenic Missense variant, coding sequence variant
rs121909521 C>G Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT023513 hsa-miR-1-3p Proteomics 18668040
MIRT037359 hsa-miR-877-5p CLASH 23622248
MIRT550909 hsa-miR-3662 PAR-CLIP 21572407
MIRT550908 hsa-miR-1252-3p PAR-CLIP 21572407
MIRT550907 hsa-miR-495-3p PAR-CLIP 21572407
Transcription factors
Transcription factor Regulation Reference
AR Activation 15623502
FOS Unknown 1460048
JUN Unknown 1460048
SRF Unknown 15623502
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001725 Component Stress fiber IBA
GO:0001725 Component Stress fiber IDA 15198992
GO:0005200 Function Structural constituent of cytoskeleton TAS 10508519
GO:0005515 Function Protein binding IPI 12849983, 18835984, 28514442, 32814053, 33961781
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
102610 129 ENSG00000143632
Protein
UniProt ID P68133
Protein name Actin, alpha skeletal muscle (EC 3.6.4.-) (Alpha-actin-1) [Cleaved into: Actin, alpha skeletal muscle, intermediate form]
Protein function Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells.
PDB 7RNS , 7RNU , 7RNV , 9DUU , 9DUV
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00022 Actin 4 377 Actin Family
Sequence
Sequence length 377
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Motor proteins
Cytoskeleton in muscle cells
  Striated Muscle Contraction
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
congenital myopathy Congenital myopathy 2c, severe infantile, autosomal dominant, Congenital myopathy 2b, severe infantile, autosomal recessive, Congenital myopathy rs121909531, rs1064794287, rs759242559, rs121909519, rs367543049, rs121909521, rs121909522, rs121909523, rs398122936, rs121909524, rs1571893814, rs121909529, rs1558081664, rs768144106 N/A
congenital myopathy with fiber type disproportion Congenital myopathy with fiber type disproportion rs367543049, rs367543048, rs121909529, rs1558081664, rs121909531 N/A
Progressive Scapulohumeroperoneal Distal Myopathy progressive scapulohumeroperoneal distal myopathy rs1057521120, rs121909531, rs1553255357, rs367543048, rs121909522, rs869312739 N/A
Nemaline myopathy nemaline myopathy 2, Nemaline myopathy 3, autosomal dominant or recessive rs1553255357, rs1553255362, rs587780271, rs587780272 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Congenital Myopathy With Excess Of Thin Filaments congenital myopathy with excess of thin filaments N/A N/A GenCC
Restrictive cardiomyopathy Familial restrictive cardiomyopathy N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Actin Accumulation Myopathy Associate 19562689, 25938801
Adenocarcinoma Associate 17965528, 28611465
Adenocarcinoma of Lung Stimulate 25189096
Adenocarcinoma of Lung Associate 30605235
Adenoma Pleomorphic Associate 20614261, 25611270
Adenoma Pleomorphic Stimulate 21996542
Adenomyosis Associate 37884924
Airway Obstruction Associate 21496259
Alzheimer Disease Associate 26988843
Ameloblastoma Associate 20333560, 33917771