Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
57716
Gene name Gene Name - the full gene name approved by the HGNC.
Periaxin
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PRX
Synonyms (NCBI Gene) Gene synonyms aliases
CMT4F
Chromosome Chromosome number
19
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
19q13.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a protein involved in peripheral nerve myelin upkeep. The encoded protein contains 2 PDZ domains which were named after PSD95 (post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1 (a mammalian tight junc
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs3814290 C>A,G,T Uncertain-significance, not-provided, pathogenic 3 prime UTR variant, coding sequence variant, missense variant
rs10425452 G>A Conflicting-interpretations-of-pathogenicity 3 prime UTR variant, coding sequence variant, missense variant
rs104894706 G>A,C,T Pathogenic, uncertain-significance Coding sequence variant, missense variant, synonymous variant, stop gained, 3 prime UTR variant
rs104894707 A>T Pathogenic 3 prime UTR variant, coding sequence variant, stop gained
rs104894708 G>A Pathogenic 3 prime UTR variant, coding sequence variant, stop gained
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT021812 hsa-miR-132-3p Microarray 17612493
MIRT714688 hsa-miR-524-3p HITS-CLIP 19536157
MIRT714687 hsa-miR-525-3p HITS-CLIP 19536157
MIRT714686 hsa-miR-6895-5p HITS-CLIP 19536157
MIRT714685 hsa-miR-3918 HITS-CLIP 19536157
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 17474147, 21044950
GO:0005634 Component Nucleus IBA
GO:0005634 Component Nucleus IDA 24633211
GO:0005634 Component Nucleus IEA
GO:0005737 Component Cytoplasm IBA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
605725 13797 ENSG00000105227
Protein
UniProt ID Q9BXM0
Protein name Periaxin
Protein function Scaffolding protein that functions as part of a dystroglycan complex in Schwann cells, and as part of EZR and AHNAK-containing complexes in eye lens fiber cells. Required for the maintenance of the peripheral myelin sheath that is essential for
PDB 4CMZ
Family and domains
Tissue specificity TISSUE SPECIFICITY: Detected in spinal cord (PubMed:11133365). Isoform 1 and isoform 2 are found in sciatic nerve and Schwann cells (PubMed:11157804). {ECO:0000269|PubMed:11133365, ECO:0000269|PubMed:11157804}.
Sequence
MEARSRSAEELRRAELVEIIVETEAQTGVSGINVAGGGKEGIFVRELREDSPAARSLSLQ
EGDQLLSARVFFENFKYEDALRLLQCAEPYKVSFCLKRTVPTGDLALRPGTVSGYEIKGP
RAKVAKLNIQSLSPVKKKKMVPGALGVPADLAPVDVEFSFPKFSRLRRGLKAEAVKGPVP
AAPARRRLQLPRLRVREVAEEAQAARLAAAAPPPRKAKVEAEVAAGARFTAPQVELVGPR
LPGAEVGVPQVSAPKAAPSAEAAGGFALHLPTLGLGAPAPPAVEAPAVGIQVPQVELPAL
PSLPTLPTLPCLETREGAVSVVVPTLDVAAPTVGVDLALPGAEVEARGEAPEVALKMPRL
SFPRFGARAKEVAEAKVAKVSPEARVKGPRLRMPTFGLSLLEPRPAAPEVVESKLKLPTI
KMPSLGIGVSGPEVKVPKGPEVKLPKAPEVKLPKVPEAALPEVRLPEVELPKVSEMKLPK
VPEMAVPEVRLPEVELPKVSEMKLPKVPEMAVPEVRLPEVQLLKVSEMKLPKVPEMAVPE
VRLPEVQLPKVSEMKLPEVSEVAVPEVRLPEVQLPKVPEMKVPEMKLPKVPEMKLPEMKL
PEVQLPKVPEMAVPDVHLPEVQLPKVPEMKLPEMKLPEVKLPKVPEMAVPDVHLPEVQLP
KVPEMKLPKMPEMAVPEVRLPEVQLPKVSEMKLPKVPEMAVPDVHLPEVQLPKVCEMKVP
DMKLPEIKLPKVPEMAVPDVHLPEVQLPKVSEIRLPEMQVPKVPDVHLPKAPEVKLPRAP
EVQLKATKAEQAEGMEFGFKMPKMTMPKLGRAESPSRGKPGEAGAEVSGKLVTLPCLQPE
VDGEAHVGVPSLTLPSVELDLPGALGLQGQVPAAKMGKGERVEGPEVAAGVREVGFRVPS
VEIVTPQLPAVEIEEGRLEMIETKVKPSSKFSLPKFGLSGPKVAKAEAEGAGRATKLKVS
KFAISLPKARVGAEAEAKGAGEAGLLPALDLSIPQLSLDAHLPSGKVEVAGADLKFKGPR
FALPKFGVRGRDTEAAELVPGVAELEGKGWGWDGRVKMPKLKMPSFGLARGKEAEVQGDR
ASPGEKAESTAVQLKIPEVELVTLGAQEEGRAEGAVAVSGMQLSGLKVSTAGQVVTEGHD
AGLRMPPLGISLPQVELTGFGEAGTPGQQAQSTVPSAEGTAGYRVQVPQVTLSLPGAQVA
GGELLVGEGVFKMPTVTVPQLELDVGLSREAQAGEAATGEGGLRLKLPTLGARARVGGEG
AEEQPPGAERTFCLSLPDVELSPSGGNHAEYQVAEGEGEAGHKLKVRLPRFGLVRAKEGA
EEGEKAKSPKLRLPRVGFSQSEMVTGEGSPSPEEEEEEEEEGSGEGASGRRGRVRVRLPR
VGLAAPSKASRGQEGDAAPKSPVREKSPKFRFPRVSLSPKARSGSGDQEEGGLRVRLPSV
GFSETGAPGPARMEGAQAAAV
Sequence length 1461
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    EGR2 and SOX10-mediated initiation of Schwann cell myelination
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Charcot-Marie-Tooth Disease charcot-marie-tooth disease type 4, Charcot-Marie-Tooth Disease, charcot-marie-tooth disease type 4f rs574861276, rs1599656136, rs1599662669, rs797045102, rs1568710514, rs768074428, rs104894706, rs754521978, rs1568704829, rs1599656851, rs1568708792, rs753857146, rs773009397, rs1599651726, rs1210729449
View all (17 more)
N/A
Charcot-Marie-Tooth disease Charcot-Marie-Tooth disease, type I rs1599656851, rs756689732 N/A
dejerine-sottas disease Dejerine-Sottas disease rs773009397, rs1555801290, rs104894708 N/A
Peripheral Neuropathy peripheral neuropathy rs104894715, rs144183238 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Distal Spinal Muscular Atrophy distal spinal muscular atrophy N/A N/A ClinVar
Otitis media Otitis media N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Ataxia Associate 31426691
Cataract Associate 36161833
Charcot Marie Tooth Disease Associate 18504680, 25164601, 36833258, 36870952
Charcot Marie Tooth disease Type 4E Associate 31426691
Demyelinating Diseases Associate 18504680
Foot Deformities Associate 21840889
Hereditary Sensory and Autonomic Neuropathy Type Ie Associate 18504680
Hereditary Sensory and Motor Neuropathy Associate 26059842, 31426691, 36833258, 36870952
Heredodegenerative Disorders Nervous System Associate 23832213
Muscle Weakness Associate 31426691