Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
5771
Gene name Gene Name - the full gene name approved by the HGNC.
Protein tyrosine phosphatase non-receptor type 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PTPN2
Synonyms (NCBI Gene) Gene synonyms aliases
PTN2, PTPT, TC-PTP, TC45, TC48, TCELLPTP, TCPTP
Chromosome Chromosome number
18
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
18p11.21
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. Members of the PTP family share a highly conserved catalytic motif, which is essential for the catalytic activity. PTPs are known to be signaling molecules that
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT054248 hsa-miR-210-3p Chip, Luciferase reporter assay, QRTPCR, Western blot 23579275
MIRT450163 hsa-miR-1264 PAR-CLIP 22100165
MIRT450162 hsa-miR-520d-5p PAR-CLIP 22100165
MIRT450161 hsa-miR-524-5p PAR-CLIP 22100165
MIRT450163 hsa-miR-1264 HITS-CLIP 27418678
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0004721 Function Phosphoprotein phosphatase activity IEA
GO:0004725 Function Protein tyrosine phosphatase activity EXP 12138178
GO:0004725 Function Protein tyrosine phosphatase activity IDA 12138178, 12612081, 17210636, 23006999
GO:0004725 Function Protein tyrosine phosphatase activity IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
176887 9650 ENSG00000175354
Protein
UniProt ID P17706
Protein name Tyrosine-protein phosphatase non-receptor type 2 (EC 3.1.3.48) (T-cell protein-tyrosine phosphatase) (TCPTP)
Protein function Non-receptor type tyrosine-specific phosphatase that dephosphorylates receptor protein tyrosine kinases including INSR, EGFR, CSF1R, PDGFR. Also dephosphorylates non-receptor protein tyrosine kinases like JAK1, JAK2, JAK3, Src family kinases, ST
PDB 1L8K , 6ZZ4 , 7F5N , 7F5O , 7UAD , 8U0H , 8UH6 , 9C54 , 9C55 , 9C56
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00102 Y_phosphatase 42 274 Protein-tyrosine phosphatase Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed. Isoform 2 is probably the major isoform. Isoform 1 is expressed in T-cells and in placenta. {ECO:0000269|PubMed:1731319, ECO:0000269|PubMed:2546150}.
Sequence
MPTTIEREFEELDTQRRWQPLYLEIRNESHDYPHRVAKFPENRNRNRYRDVSPYDHSRVK
LQNAENDYINASLVDIEEAQRSYILTQGPLPNTCCHFWLMVWQQKTKAVVMLNRIVEKES
VKCAQYWPTDDQEMLFKETGFSVKLLSEDVKSYYTVHLLQLENINSGETRTISHFHYTTW
PDFGVPESPASFLNFLFKVRESGSLNPDHGPAVIHCSAGIGRSGTFSLVDTCLVLMEKGD
DINIKQVLLNMRKYRMGLIQTPDQLRFSYMAIIE
GAKCIKGDSSIQKRWKELSKEDLSPA
FDHSPNKIMTEKYNGNRIGLEEEKLTGDRCTGLSSKMQDTMEENSESALRKRIREDRKAT
TAQKVQQMKQRLNENERKRKRWLYWQPILTKMGFMSVILVGAFVGWTLFFQQNAL
Sequence length 415
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  JAK-STAT signaling pathway   Negative regulation of MET activity
Regulation of IFNG signaling
Interleukin-37 signaling
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Celiac disease Celiac disease N/A N/A GWAS
Colorectal Cancer Colorectal cancer N/A N/A GWAS
Crohn Disease Crohn's disease N/A N/A GWAS
Diabetes Type 1 diabetes N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Adenoma Islet Cell Associate 22315323, 22960018
Albuminuria Associate 30246029
Alzheimer Disease Associate 29684019
Antiphospholipid Syndrome Associate 30471352
Arthritis Juvenile Associate 20722033, 22294642, 23603761, 24886659, 30940621
Arthritis Rheumatoid Associate 21452313, 23577190, 25652333, 28107378, 29398253, 29423382, 34445589
Ataxia Telangiectasia Associate 21551237, 31270080
ATR X syndrome Associate 37812190
Autoimmune Diseases Associate 20722033, 26040922, 29398253, 30471352, 31722988
Autoimmune Diseases of the Nervous System Associate 39959585