Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
57704
Gene name Gene Name - the full gene name approved by the HGNC.
Glucosylceramidase beta 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
GBA2
Synonyms (NCBI Gene) Gene synonyms aliases
AD035, NLGase, SPG46
Chromosome Chromosome number
9
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
9p13.3
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a microsomal beta-glucosidase that catalyzes the hydrolysis of bile acid 3-O-glucosides as endogenous compounds. Studies to determine subcellular localization of this protein in the liver indicated that the enzyme was mainly enriched in
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs142607078 C>G,T Conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
rs398123012 G>A Pathogenic, likely-pathogenic Intron variant, missense variant, coding sequence variant
rs398123013 G>A,C Pathogenic Synonymous variant, 5 prime UTR variant, stop gained, missense variant, coding sequence variant, intron variant
rs398123014 G>A,C Pathogenic Stop gained, missense variant, coding sequence variant
rs398123064 C>G Likely-pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT037829 hsa-miR-455-3p CLASH 23622248
MIRT476461 hsa-miR-24-3p PAR-CLIP 23592263
MIRT476459 hsa-miR-6768-3p PAR-CLIP 23592263
MIRT476460 hsa-miR-3173-3p PAR-CLIP 23592263
MIRT476457 hsa-miR-6891-5p PAR-CLIP 23592263
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane IEA
GO:0000139 Component Golgi membrane ISS
GO:0004336 Function Galactosylceramidase activity IEA
GO:0004348 Function Glucosylceramidase activity IDA 17080196
GO:0004348 Function Glucosylceramidase activity IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
609471 18986 ENSG00000070610
Protein
UniProt ID Q9HCG7
Protein name Non-lysosomal glucosylceramidase (NLGase) (EC 3.2.1.45) (Beta-glucocerebrosidase 2) (Beta-glucosidase 2) (Bile acid beta-glucosidase GBA2) (Bile acid glucosyl transferase GBA2) (Cholesterol glucosyltransferase GBA2) (EC 2.4.1.-) (Cholesteryl-beta-glucosid
Protein function Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramides/GlcCers (such as beta-D-glucosyl-(1<->1')-N-acylsphing-4-enine) to free glucose and ceramides (such as N-acylsphing-4-enine) (PubMed:17105727, PubMed:30308956, P
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF12215 Glyco_hydr_116N 151 455 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term Family
PF04685 DUF608 521 886 Glycosyl-hydrolase family 116, catalytic region Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed (PubMed:11489889). Mainly expressed in brain, heart, skeletal muscle, kidney and placenta and expressed at lower levels in liver, spleen, small intestine and lung (PubMed:11489889). Detectable in colon, thymus and peri
Sequence
MGTQDPGNMGTGVPASEQISCAKEDPQVYCPEETGGTKDVQVTDCKSPEDSRPPKETDCC
NPEDSGQLMVSYEGKAMGYQVPPFGWRICLAHEFTEKRKPFQANNVSLSNMIKHIGMGLR
YLQWWYRKTHVEKKTPFIDMINSVPLRQIYGCPLGGIGGGTITRGWRGQFCRWQLNPGMY
QHRTVIADQFTVCLRREGQTVYQQVLSLERPSVLRSWNWGLCGYFAFYHALYPRAWTVYQ
LPGQNVTLTCRQITPILPHDYQDSSLPVGVFVWDVENEGDEALDVSIMFSMRNGLGGGDD
APGGLWNEPFCLERSGETVRGLLLHHPTLPNPYTMAVAARVTAATTVTHITAFDPDSTGQ
QVWQDLLQDGQLDSPTGQSTPTQKGVGIAGAVCVSSKLRPRGQCRLEFSLAWDMPRIMFG
AKGQVHYRRYTRFFGQDGDAAPALSHYALCRYAEW
EERISAWQSPVLDDRSLPAWYKSAL
FNELYFLADGGTVWLEVLEDSLPEELGRNMCHLRPTLRDYGRFGYLEGQEYRMYNTYDVH
FYASFALIMLWPKLELSLQYDMALATLREDLTRRRYLMSGVMAPVKRRNVIPHDIGDPDD
EPWLRVNAYLIHDTADWKDLNLKFVLQVYRDYYLTGDQNFLKDMWPVCLAVMESEMKFDK
DHDGLIENGGYADQTYDGWVTTGPSAYCGGLWLAAVAVMVQMAALCGAQDIQDKFSSILS
RGQEAYERLLWNGRYYNYDSSSRPQSRSVMSDQCAGQWFLKACGLGEGDTEVFPTQHVVR
ALQTIFELNVQAFAGGAMGAVNGMQPHGVPDKSSVQSDEVWVGVVYGLAATMIQEGLTWE
GFQTAEGCYRTVWERLGLAFQTPEAYCQQRVFRSLAYMRPLSIWAM
QLALQQQQHKKASW
PKVKQGTGLRTGPMFGPKEAMANLSPE
Sequence length 927
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Other glycan degradation
Sphingolipid metabolism
Metabolic pathways
  Glycosphingolipid metabolism
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Hereditary spastic paraplegia Hereditary spastic paraplegia 46, Hereditary spastic paraplegia rs1588023668, rs1588010939, rs398123014, rs398123015, rs398123064, rs398123012, rs1448182827, rs398123013, rs1588022768 N/A
Spastic Paraplegia spastic paraplegia rs398123013, rs1588001500, rs1011987148, rs398123014, rs200268523, rs1448182827 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Cerebellar Ataxia With Spasticity autosomal recessive cerebellar ataxia with late-onset spasticity N/A N/A GenCC
Diabetes Type 2 diabetes N/A N/A GWAS
Parkinson disease Parkinson disease N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Ataxia Associate 24337409
Carcinoma Non Small Cell Lung Associate 32859637
Cataract Associate 28052128
Cerebellar Ataxia Associate 23332917, 28052128, 30308956
Charcot Marie Tooth Disease Associate 26492578
Cystic Fibrosis Associate 29333001
Dermatitis Atopic Inhibit 35462437
Fractures Spontaneous Associate 32492073
Gaucher Disease Associate 23332917, 28052128
Genetic Diseases Inborn Associate 26492578