Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	57703
Gene name Gene Name - the full gene name approved by the HGNC.	CWC22 spliceosome associated protein
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	CWC22
Synonyms (NCBI Gene) Gene synonyms aliases	EIF4GL, NCM, fSAPb
Chromosome Chromosome number	2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	2q31.3

Show/Hide all(103)

miRTarBase ID	miRNA	Experiments	Reference
MIRT041798	hsa-miR-484	CLASH	23622248
MIRT039856	hsa-miR-615-3p	CLASH	23622248
MIRT037138	hsa-miR-877-3p	CLASH	23622248
MIRT917383	hsa-miR-1296	CLIP-seq
MIRT917384	hsa-miR-1305	CLIP-seq
MIRT917385	hsa-miR-188-5p	CLIP-seq
MIRT917386	hsa-miR-204	CLIP-seq
MIRT917387	hsa-miR-211	CLIP-seq
MIRT917388	hsa-miR-3115	CLIP-seq
MIRT917389	hsa-miR-3132	CLIP-seq
MIRT917390	hsa-miR-3671	CLIP-seq
MIRT917391	hsa-miR-4299	CLIP-seq
MIRT917392	hsa-miR-4456	CLIP-seq
MIRT917393	hsa-miR-4512	CLIP-seq
MIRT917394	hsa-miR-4775	CLIP-seq
MIRT917395	hsa-miR-548q	CLIP-seq
MIRT917396	hsa-miR-561	CLIP-seq
MIRT917397	hsa-miR-590-3p	CLIP-seq
MIRT917398	hsa-miR-607	CLIP-seq
MIRT2386595	hsa-miR-145	CLIP-seq
MIRT2386596	hsa-miR-198	CLIP-seq
MIRT917384	hsa-miR-1305	CLIP-seq
MIRT917386	hsa-miR-204	CLIP-seq
MIRT917387	hsa-miR-211	CLIP-seq
MIRT917390	hsa-miR-3671	CLIP-seq
MIRT917391	hsa-miR-4299	CLIP-seq
MIRT917392	hsa-miR-4456	CLIP-seq
MIRT917395	hsa-miR-548q	CLIP-seq
MIRT917396	hsa-miR-561	CLIP-seq
MIRT917398	hsa-miR-607	CLIP-seq
MIRT2510969	hsa-miR-1273f	CLIP-seq
MIRT917383	hsa-miR-1296	CLIP-seq
MIRT917384	hsa-miR-1305	CLIP-seq
MIRT2510970	hsa-miR-143	CLIP-seq
MIRT917385	hsa-miR-188-5p	CLIP-seq
MIRT917386	hsa-miR-204	CLIP-seq
MIRT917387	hsa-miR-211	CLIP-seq
MIRT917388	hsa-miR-3115	CLIP-seq
MIRT917389	hsa-miR-3132	CLIP-seq
MIRT2510971	hsa-miR-3163	CLIP-seq
MIRT2510972	hsa-miR-3171	CLIP-seq
MIRT2510973	hsa-miR-340	CLIP-seq
MIRT2510974	hsa-miR-3646	CLIP-seq
MIRT2510975	hsa-miR-3662	CLIP-seq
MIRT917390	hsa-miR-3671	CLIP-seq
MIRT2510976	hsa-miR-3973	CLIP-seq
MIRT2510977	hsa-miR-4275	CLIP-seq
MIRT917391	hsa-miR-4299	CLIP-seq
MIRT917392	hsa-miR-4456	CLIP-seq
MIRT917393	hsa-miR-4512	CLIP-seq
MIRT2510978	hsa-miR-4708-5p	CLIP-seq
MIRT2510979	hsa-miR-4770	CLIP-seq
MIRT917394	hsa-miR-4775	CLIP-seq
MIRT2510980	hsa-miR-513a-3p	CLIP-seq
MIRT2510981	hsa-miR-520g	CLIP-seq
MIRT2510982	hsa-miR-520h	CLIP-seq
MIRT2510983	hsa-miR-548a-5p	CLIP-seq
MIRT2510984	hsa-miR-548ab	CLIP-seq
MIRT2510985	hsa-miR-548ak	CLIP-seq
MIRT2510986	hsa-miR-548b-5p	CLIP-seq
MIRT2510987	hsa-miR-548c-5p	CLIP-seq
MIRT2510988	hsa-miR-548d-5p	CLIP-seq
MIRT2510989	hsa-miR-548h	CLIP-seq
MIRT2510990	hsa-miR-548i	CLIP-seq
MIRT2510991	hsa-miR-548j	CLIP-seq
MIRT917395	hsa-miR-548q	CLIP-seq
MIRT2510992	hsa-miR-548w	CLIP-seq
MIRT2510993	hsa-miR-548y	CLIP-seq
MIRT2510994	hsa-miR-559	CLIP-seq
MIRT917396	hsa-miR-561	CLIP-seq
MIRT2510995	hsa-miR-570	CLIP-seq
MIRT917397	hsa-miR-590-3p	CLIP-seq
MIRT917398	hsa-miR-607	CLIP-seq
MIRT2510969	hsa-miR-1273f	CLIP-seq
MIRT917383	hsa-miR-1296	CLIP-seq
MIRT917384	hsa-miR-1305	CLIP-seq
MIRT2510970	hsa-miR-143	CLIP-seq
MIRT917385	hsa-miR-188-5p	CLIP-seq
MIRT917386	hsa-miR-204	CLIP-seq
MIRT917387	hsa-miR-211	CLIP-seq
MIRT917388	hsa-miR-3115	CLIP-seq
MIRT917389	hsa-miR-3132	CLIP-seq
MIRT2510971	hsa-miR-3163	CLIP-seq
MIRT2510972	hsa-miR-3171	CLIP-seq
MIRT2510973	hsa-miR-340	CLIP-seq
MIRT2510974	hsa-miR-3646	CLIP-seq
MIRT2510975	hsa-miR-3662	CLIP-seq
MIRT917390	hsa-miR-3671	CLIP-seq
MIRT2510977	hsa-miR-4275	CLIP-seq
MIRT917391	hsa-miR-4299	CLIP-seq
MIRT917392	hsa-miR-4456	CLIP-seq
MIRT917393	hsa-miR-4512	CLIP-seq
MIRT2510978	hsa-miR-4708-5p	CLIP-seq
MIRT2510979	hsa-miR-4770	CLIP-seq
MIRT917394	hsa-miR-4775	CLIP-seq
MIRT2510980	hsa-miR-513a-3p	CLIP-seq
MIRT2678826	hsa-miR-520d-5p	CLIP-seq
MIRT2678827	hsa-miR-524-5p	CLIP-seq
MIRT917395	hsa-miR-548q	CLIP-seq
MIRT917396	hsa-miR-561	CLIP-seq
MIRT2510995	hsa-miR-570	CLIP-seq
MIRT917397	hsa-miR-590-3p	CLIP-seq
MIRT917398	hsa-miR-607	CLIP-seq

Show/Hide all(23)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000398	Process	MRNA splicing, via spliceosome	IBA
GO:0000398	Process	MRNA splicing, via spliceosome	IC	11991638
GO:0000398	Process	MRNA splicing, via spliceosome	IDA	29360106
GO:0003723	Function	RNA binding	IBA
GO:0003723	Function	RNA binding	IDA	11991638
GO:0003723	Function	RNA binding	IEA
GO:0005515	Function	Protein binding	IPI	22365833, 22961380, 23084401, 23236153, 29997244, 32296183
GO:0005634	Component	Nucleus	IDA	29360106
GO:0005634	Component	Nucleus	IEA
GO:0005654	Component	Nucleoplasm	TAS
GO:0005681	Component	Spliceosomal complex	IDA	11991638
GO:0005681	Component	Spliceosomal complex	IEA
GO:0005829	Component	Cytosol	IDA
GO:0006397	Process	MRNA processing	IEA
GO:0008380	Process	RNA splicing	IEA
GO:0016607	Component	Nuclear speck	IDA	22961380
GO:0016607	Component	Nuclear speck	IEA
GO:0048024	Process	Regulation of mRNA splicing, via spliceosome	IC	11991638
GO:0071005	Component	U2-type precatalytic spliceosome	IDA	29360106
GO:0071006	Component	U2-type catalytic step 1 spliceosome	IDA	29301961
GO:0071007	Component	U2-type catalytic step 2 spliceosome	IDA	28076346
GO:0071013	Component	Catalytic step 2 spliceosome	IBA
GO:0071013	Component	Catalytic step 2 spliceosome	IDA	11991638, 22961380

MIM	HGNC	e!Ensembl
615186	29322	ENSG00000163510

Protein

UniProt ID

Q9HCG8

Protein name

Pre-mRNA-splicing factor CWC22 homolog (Nucampholin homolog) (fSAPb)

Protein function

Required for pre-mRNA splicing as component of the spliceosome (PubMed:11991638, PubMed:12226669, PubMed:22961380, PubMed:28076346, PubMed:28502770, PubMed:29301961, PubMed:29360106). As a component of the minor spliceosome, involved in the spli

PDB

4C9B , 5MQF , 5XJC , 5YZG , 5Z56 , 5Z57 , 5Z58 , 6FF7 , 6ICZ , 6QDV , 6YVH , 6ZYM , 7A5P , 7DVQ , 7QTT , 7W59 , 7W5A , 7W5B , 8C6J , 8CH6 , 8I0R , 8I0S , 8I0T , 8I0U , 8I0V , 8I0W , 9FMD

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF02847	MA3	455 → 561	MA3 domain	Family

Sequence

MKSSVAQIKPSSGHDRRENLNSYQRNSSPEDRYEEQERSPRDRDYFDYSRSDYEHSRRGR
SYDSSMESRNRDREKRRERERDTDRKRSRKSPSPGRRNPETSVTQSSSAQDEPATKKKKD
ELDPLLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISI
IIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILN
FRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKEC
GLKLTQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPIILEGLDLV
EEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDTDSNTDQDAG
SSEEDEEEEEEEGEEDEEGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKME
FPESQTKELCNMILDCCAQQRTYEKFFGLLAGRFCMLKKEYMESFEGIFKEQYDTIHRLE
TNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLN
ARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPD
VEQNKSSPSSSSSASSSSESDSSDSDSDSSDSSSESSSEESDSSSISSHSSASANDVRKK
GHGKTRSKEVDKLIRNQQTNDRKQKERRQEHGHQETRTERERRSEKHRDQNSSGSNWRDP
ITKYTSDKDVPSERNNYSRVANDRDQEMHIDLENKHGDPKKKRGERRNSFSENEKHTHRI
KDSENFRRKDRSKSKEMNRKHSGSRSDEDRYQNGAERRWEKSSRYSEQSRESKKNQDRRR
EKSPAKQK

Sequence length

908

Interactions

View interactions

	Reactome
			mRNA Splicing - Major Pathway

Show/Hide Unknown Diseases (7)

Disease merge term	Disease name	Evidence	References	Source
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Gout	Gout	N/A	N/A	GWAS
Metabolic Syndrome	Metabolic syndrome	N/A	N/A	GWAS
Obesity	Obesity	N/A	N/A	GWAS
Prostate cancer	Prostate cancer (SNP x SNP interaction), Prostate cancer	N/A	N/A	GWAS
Schizophrenia	Schizophrenia	N/A	N/A	GWAS
Systemic lupus erythematosus	Systemic lupus erythematosus	N/A	N/A	GWAS
Tremor	Essential tremor	N/A	N/A	GWAS

Show/Hide Text Mining Associations (5)

Disease Name	Relationship Type	References
Associations from Text Mining Disease associations identified through Pubtator
Amyotrophic Lateral Sclerosis	Associate	35328793
Carcinoma Non Small Cell Lung	Associate	28296343
Colorectal Neoplasms	Associate	32345988
Immunologic Deficiency Syndromes	Associate	32329775
Tertiary Lymphoid Structures	Associate	32345988

CWC22 (CWC22 spliceosome associated protein)