Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene SNPs miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	57592
Gene name Gene Name - the full gene name approved by the HGNC.	Zinc finger protein 687
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	ZNF687
Synonyms (NCBI Gene) Gene synonyms aliases	PDB6
Disease Acronyms (UniProt) Disease acronyms from UniProt database	PDB6
Chromosome Chromosome number	1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	1q21.3
Summary Summary of gene provided in NCBI Entrez Gene.	This gene encodes C2H2 zinc finger protein. The encoded protein may play a role in bone differentiation and development. Mutations in this gene are the cause of Paget disease of bone-6. Alternate splicing results in multiple transcript variants. [provided

Show/Hide all(2)

SNP ID	Visualize variation	Clinical significance	Consequence
rs148402804	C>A,G,T	Uncertain-significance, pathogenic	Missense variant, coding sequence variant
rs869025582	G>T	Pathogenic	Missense variant, coding sequence variant

Show/Hide all(92)

miRTarBase ID	miRNA	Experiments	Reference
MIRT051985	hsa-let-7b-5p	CLASH	23622248
MIRT049844	hsa-miR-92a-3p	CLASH	23622248
MIRT049844	hsa-miR-92a-3p	CLASH	23622248
MIRT047954	hsa-miR-30c-5p	CLASH	23622248
MIRT040423	hsa-miR-615-3p	CLASH	23622248
MIRT036906	hsa-miR-877-3p	CLASH	23622248
MIRT036351	hsa-miR-1229-3p	CLASH	23622248
MIRT1535643	hsa-miR-103a	CLIP-seq
MIRT1535644	hsa-miR-107	CLIP-seq
MIRT1535645	hsa-miR-1184	CLIP-seq
MIRT1535646	hsa-miR-1205	CLIP-seq
MIRT1535647	hsa-miR-1224-3p	CLIP-seq
MIRT1535648	hsa-miR-125a-5p	CLIP-seq
MIRT1535649	hsa-miR-125b	CLIP-seq
MIRT1535650	hsa-miR-1260	CLIP-seq
MIRT1535651	hsa-miR-1260b	CLIP-seq
MIRT1535652	hsa-miR-1270	CLIP-seq
MIRT1535653	hsa-miR-1280	CLIP-seq
MIRT1535654	hsa-miR-185	CLIP-seq
MIRT1535655	hsa-miR-1909	CLIP-seq
MIRT1535656	hsa-miR-1910	CLIP-seq
MIRT1535657	hsa-miR-214	CLIP-seq
MIRT1535658	hsa-miR-219-1-3p	CLIP-seq
MIRT1535659	hsa-miR-3158-5p	CLIP-seq
MIRT1535660	hsa-miR-3162-3p	CLIP-seq
MIRT1535661	hsa-miR-3163	CLIP-seq
MIRT1535662	hsa-miR-3170	CLIP-seq
MIRT1535663	hsa-miR-3174	CLIP-seq
MIRT1535664	hsa-miR-361-3p	CLIP-seq
MIRT1535665	hsa-miR-3619-5p	CLIP-seq
MIRT1535666	hsa-miR-3667-3p	CLIP-seq
MIRT1535667	hsa-miR-4259	CLIP-seq
MIRT1535668	hsa-miR-4278	CLIP-seq
MIRT1535669	hsa-miR-4282	CLIP-seq
MIRT1535670	hsa-miR-4306	CLIP-seq
MIRT1535671	hsa-miR-4319	CLIP-seq
MIRT1535672	hsa-miR-4418	CLIP-seq
MIRT1535673	hsa-miR-4421	CLIP-seq
MIRT1535674	hsa-miR-4531	CLIP-seq
MIRT1535675	hsa-miR-455-3p	CLIP-seq
MIRT1535676	hsa-miR-4644	CLIP-seq
MIRT1535677	hsa-miR-4658	CLIP-seq
MIRT1535678	hsa-miR-4716-3p	CLIP-seq
MIRT1535679	hsa-miR-4722-5p	CLIP-seq
MIRT1535680	hsa-miR-4732-3p	CLIP-seq
MIRT1535681	hsa-miR-4758-5p	CLIP-seq
MIRT1535682	hsa-miR-4778-3p	CLIP-seq
MIRT1535683	hsa-miR-509-3-5p	CLIP-seq
MIRT1535684	hsa-miR-509-5p	CLIP-seq
MIRT1535685	hsa-miR-532-3p	CLIP-seq
MIRT1535686	hsa-miR-544	CLIP-seq
MIRT1535687	hsa-miR-571	CLIP-seq
MIRT1535688	hsa-miR-620	CLIP-seq
MIRT1535689	hsa-miR-637	CLIP-seq
MIRT1535690	hsa-miR-649	CLIP-seq
MIRT1535691	hsa-miR-670	CLIP-seq
MIRT1535692	hsa-miR-761	CLIP-seq
MIRT1535646	hsa-miR-1205	CLIP-seq
MIRT1535647	hsa-miR-1224-3p	CLIP-seq
MIRT1535650	hsa-miR-1260	CLIP-seq
MIRT1535651	hsa-miR-1260b	CLIP-seq
MIRT1535653	hsa-miR-1280	CLIP-seq
MIRT1535655	hsa-miR-1909	CLIP-seq
MIRT1535658	hsa-miR-219-1-3p	CLIP-seq
MIRT2161781	hsa-miR-3147	CLIP-seq
MIRT1535662	hsa-miR-3170	CLIP-seq
MIRT1535663	hsa-miR-3174	CLIP-seq
MIRT1535664	hsa-miR-361-3p	CLIP-seq
MIRT1535667	hsa-miR-4259	CLIP-seq
MIRT1535668	hsa-miR-4278	CLIP-seq
MIRT1535672	hsa-miR-4418	CLIP-seq
MIRT1535673	hsa-miR-4421	CLIP-seq
MIRT1535677	hsa-miR-4658	CLIP-seq
MIRT2161782	hsa-miR-4690-5p	CLIP-seq
MIRT1535678	hsa-miR-4716-3p	CLIP-seq
MIRT1535681	hsa-miR-4758-5p	CLIP-seq
MIRT1535683	hsa-miR-509-3-5p	CLIP-seq
MIRT1535684	hsa-miR-509-5p	CLIP-seq
MIRT1535685	hsa-miR-532-3p	CLIP-seq
MIRT1535687	hsa-miR-571	CLIP-seq
MIRT1535689	hsa-miR-637	CLIP-seq
MIRT1535690	hsa-miR-649	CLIP-seq
MIRT1535646	hsa-miR-1205	CLIP-seq
MIRT1535655	hsa-miR-1909	CLIP-seq
MIRT1535663	hsa-miR-3174	CLIP-seq
MIRT1535668	hsa-miR-4278	CLIP-seq
MIRT1535672	hsa-miR-4418	CLIP-seq
MIRT1535677	hsa-miR-4658	CLIP-seq
MIRT1535678	hsa-miR-4716-3p	CLIP-seq
MIRT1535681	hsa-miR-4758-5p	CLIP-seq
MIRT1535683	hsa-miR-509-3-5p	CLIP-seq
MIRT1535684	hsa-miR-509-5p	CLIP-seq

Show/Hide all(5)

GO ID	Ontology	Definition	Evidence	Reference
GO:0003677	Function	DNA binding	IEA
GO:0005515	Function	Protein binding	IPI	26496610, 32296183
GO:0005654	Component	Nucleoplasm	IDA
GO:0005829	Component	Cytosol	IDA
GO:0046872	Function	Metal ion binding	IEA

MIM	HGNC	e!Ensembl
610568	29277	ENSG00000143373

Protein

UniProt ID

Q8N1G0

Protein name

Zinc finger protein 687

Protein function

May be involved in transcriptional regulation.

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00096	zf-C2H2	993 → 1016	Zinc finger, C2H2 type	Domain
PF16622	zf-C2H2_11	1131 → 1159	zinc-finger C2H2-type	Domain
PF00096	zf-C2H2	1200 → 1222	Zinc finger, C2H2 type	Domain

Tissue specificity

TISSUE SPECIFICITY: Widely expressed with highest levels in obvary, muscle, blood and lung. {ECO:0000269|PubMed:26849110}.

Sequence

MGDMKTPDFDDLLAAFDIPDIDANEAIHSGPEENEGPGGPGKPEPGVGSESEDTAAASAG
DGPGVPAQASDHGLPPPDISVVSVIVKNTVCPEQSEALAGGSAGDGAQAAGVTKEGPVGP
HRMQNGFGSPEPSLPGTPHSPAPPSGGTWKEKGMEGKTPLDLFAHFGPEPGDHSDPLPPS
APSPTREGALTPPPFPSSFELAQENGPGMQPPVSSPPLGALKQESCSPHHPQVLAQQGSG
SSPKATDIPASASPPPVAGVPFFKQSPGHQSPLASPKVPVCQPLKEEDDDEGPVDKSSPG
SPQSPSSGAEAADEDSNDSPASSSSRPLKVRIKTIKTSCGNITRTVTQVPSDPDPPAPLA
EGAFLAEASLLKLSPATPTSEGPKVVSVQLGDGTRLKGTVLPVATIQNASTAMLMAASVA
RKAVVLPGGTATSPKMIAKNVLGLVPQALPKADGRAGLGTGGQKVNGASVVMVQPSKTAT
GPSTGGGTVISRTQSSLVEAFNKILNSKNLLPAYRPNLSPPAEAGLALPPTGYRCLECGD
AFSLEKSLARHYDRRSMRIEVTCNHCARRLVFFNKCSLLLHAREHKDKGLVMQCSHLVMR
PVALDQMVGQPDITPLLPVAVPPVSGPLALPALGKGEGAITSSAITTVAAEAPVLPLSTE
PPAAPATSAYTCFRCLECKEQCRDKAGMAAHFQQLGPPAPGATSNVCPTCPMMLPNRCSF
SAHQRMHKNRPPHVCPECGGNFLQANFQTHLREACLHVSRRVGYRCPSCSVVFGGVNSIK
SHIQTSHCEVFHKCPICPMAFKSGPSAHAHLYSQHPSFQTQQAKLIYKCAMCDTVFTHKP
LLSSHFDQHLLPQRVSVFKCPSCPLLFAQKRTMLEHLKNTHQSGRLEETAGKGAGGALLT
PKTEPEELAVSQGGAAPATEESSSSSEEEEVPSSPEPPRPAKRPRRELGSKGLKGGGGGP
GGWTCGLCHSWFPERDEYVAHMKKEHGKSVKKFPCRLCERSFCSAPSLRRHVRVNHEGIK
RVYPCRYCTEGKRTFSSRLILEKHVQVRHGLQLGAQSPGRGTTLARGSSARAQGPGRKRR
QSSDSCSEEPDSTTPPAKSPRGGPGSGGHGPLRYRSSSSTEQSLMMGLRVEDGAQQCLDC
GLCFASPGSLSRHRFISHKKRRGVGKASALGLGDGEEEAPPSRSDPDGGDSPLPASGGPL
TCKVCGKSCDSPLNLKTHFRTHGMAFIRARQGAVGDN

Sequence length

1237

Interactions

View interactions

Show/Hide Causal Diseases (2)

Disease term	Disease name	dbSNP ID	References
Causal
Arthritis	Degenerative polyarthritis	rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470
Paget disease	Osteitis Deformans, PAGET DISEASE OF BONE 6, NON RARE IN EUROPE: Paget disease of bone	rs796051862, rs796051869, rs796051870, rs796052213, rs1555767678, rs869025582	26849110

Show/Hide Text Mining Associations (9)

Disease Name	Relationship Type	References
Associations from Text Mining
Adenocarcinoma of Lung	Stimulate	36944484
Carcinoma Hepatocellular	Associate	36944484, 39377570
Giant Cell Tumor of Bone	Associate	36944484
Giant Cell Tumors	Associate	32106343
Leukemia Myeloid Acute	Associate	36944484
Neointima	Associate	36372390
Neoplasms	Associate	32106343, 36944484
Osteitis Deformans	Associate	32106343, 36372390
Osteosarcoma	Associate	32106343

ZNF687 (zinc finger protein 687)