Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
57470
Gene name Gene Name - the full gene name approved by the HGNC.
Leucine rich repeat containing 47
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
LRRC47
Synonyms (NCBI Gene) Gene synonyms aliases
-
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1p36.32
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT032448 hsa-let-7b-5p Proteomics 18668040
MIRT662688 hsa-miR-6768-5p HITS-CLIP 23824327
MIRT662687 hsa-miR-4438 HITS-CLIP 23824327
MIRT662686 hsa-miR-4768-3p HITS-CLIP 23824327
MIRT662685 hsa-miR-6840-3p HITS-CLIP 23824327
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0003723 Function RNA binding HDA 22681889
GO:0004826 Function Phenylalanine-tRNA ligase activity IEA
GO:0005515 Function Protein binding IPI 22190034
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
619154 29207 ENSG00000130764
Protein
UniProt ID Q8N1G4
Protein name Leucine-rich repeat-containing protein 47
PDB 6ZXD , 6ZXE , 6ZXF , 6ZXG , 8XP3
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF12799 LRR_4 99 150 Leucine Rich repeats (2 copies) Repeat
PF00560 LRR_1 154 175 Leucine Rich Repeat Repeat
PF00560 LRR_1 203 224 Leucine Rich Repeat Repeat
PF03483 B3_4 332 501 B3/4 domain Domain
Sequence
MAAAAVSESWPELELAERERRRELLLTGPGLEERVRAAGGQLPPRLFTLPLLHYLEVSGC
GSLRAPGPGLAQGLPQLHSLVLRRNALGPGLSPELGPLPALRVLDLSGNALEALPPGQGL
GPAEPPGLPQLQSLNLSGNRLRELPADLAR
CAPRLQSLNLTGNCLDSFPAELFRPGALPL
LSELAAADNCLRELSPDIAHLASLKTLDLSNNQLSEIPAELADCPKLKEINFRGNKLRDK
RLEKMVSGCQTRSILEYLRVGGRGGGKGKGRAEGSEKEESRRKRRERKQRREGGDGEEQD
VGDAGRLLLRVLHVSENPVPLTVRVSPEVRDVRPYIVGAVVRGMDLQPGNALKRFLTSQT
KLHEDLCEKRTAATLATHELRAVKGPLLYCARPPQDLKIVPLGRKEAKAKELVRQLQLEA
EEQRKQKKRQSVSGLHRYLHLLDGNENYPCLVDADGDVISFPPITNSEKTKVKKTTSDLF
LEVTSATSLQICKDVMDALIL
KMAEMKKYTLENKEEGSLSDTEADAVSGQLPDPTTNPSA
GKDGPSLLVVEQVRVVDLEGSLKVVYPSKADLATAPPHVTVVR
Sequence length 583
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Colorectal cancer Colorectal Carcinoma rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800
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