Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	57468
Gene name Gene Name - the full gene name approved by the HGNC.	Solute carrier family 12 member 5
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	SLC12A5
Synonyms (NCBI Gene) Gene synonyms aliases	DEE34, EIEE34, EIG14, KCC2, hKCC2
Chromosome Chromosome number	20
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	20q13.12
Summary Summary of gene provided in NCBI Entrez Gene.	K-Cl cotransporters are proteins that lower intracellular chloride concentrations below the electrochemical equilibrium potential. The protein encoded by this gene is an integral membrane K-Cl cotransporter that can function in either a net efflux or infl

Show/Hide all(17)

SNP ID	Visualize variation	Clinical significance	Consequence
rs142740233	G>A,T	Risk-factor, benign	Missense variant, coding sequence variant
rs368484023	A>G,T	Pathogenic	Coding sequence variant, missense variant
rs548424453	C>A,T	Risk-factor	Coding sequence variant, missense variant
rs750336750	G>A,T	Pathogenic	Coding sequence variant, missense variant
rs863225304	T>C	Pathogenic	Missense variant, coding sequence variant
rs863225305	G>A	Pathogenic	Missense variant, coding sequence variant
rs863225306	T>A	Pathogenic	Missense variant, coding sequence variant
rs1220094830	T>C,G	Pathogenic	Missense variant, coding sequence variant
rs1259210706	G>A,C	Pathogenic	Missense variant, stop gained, coding sequence variant
rs1555863145	TG>-	Pathogenic	Coding sequence variant, frameshift variant
rs1555863593	->T	Pathogenic	Coding sequence variant, frameshift variant
rs1555868402	G>A	Likely-pathogenic	Coding sequence variant, missense variant
rs1568858867	G>C	Pathogenic	Splice donor variant
rs1568859798	C>T	Pathogenic	Coding sequence variant, missense variant
rs1568862550	C>T	Pathogenic	Coding sequence variant, missense variant
rs1568866916	TCC>-	Pathogenic	Inframe deletion, coding sequence variant
rs1600590580	G>T	Pathogenic	Stop gained, coding sequence variant

Show/Hide all(206)

miRTarBase ID	miRNA	Experiments	Reference
MIRT501141	hsa-miR-3614-5p	HITS-CLIP	23824327
MIRT501140	hsa-miR-6500-3p	HITS-CLIP	23824327
MIRT653758	hsa-miR-6840-3p	HITS-CLIP	23824327
MIRT653757	hsa-miR-4726-3p	HITS-CLIP	23824327
MIRT653756	hsa-miR-6887-3p	HITS-CLIP	23824327
MIRT653755	hsa-miR-4667-3p	HITS-CLIP	23824327
MIRT653754	hsa-miR-5193	HITS-CLIP	23824327
MIRT653753	hsa-miR-6075	HITS-CLIP	23824327
MIRT653752	hsa-miR-4469	HITS-CLIP	23824327
MIRT653751	hsa-miR-4313	HITS-CLIP	23824327
MIRT653750	hsa-miR-4433a-5p	HITS-CLIP	23824327
MIRT653749	hsa-miR-6749-3p	HITS-CLIP	23824327
MIRT653748	hsa-miR-4433b-5p	HITS-CLIP	23824327
MIRT653747	hsa-miR-4646-3p	HITS-CLIP	23824327
MIRT501145	hsa-miR-224-5p	PAR-CLIP	24398324
MIRT296112	hsa-miR-92a-3p	PAR-CLIP	24398324
MIRT296116	hsa-miR-92b-3p	PAR-CLIP	24398324
MIRT296114	hsa-miR-367-3p	PAR-CLIP	24398324
MIRT296113	hsa-miR-363-3p	PAR-CLIP	24398324
MIRT296111	hsa-miR-32-5p	PAR-CLIP	24398324
MIRT296110	hsa-miR-25-3p	PAR-CLIP	24398324
MIRT501144	hsa-miR-548n	PAR-CLIP	24398324
MIRT501143	hsa-miR-548az-5p	PAR-CLIP	24398324
MIRT501142	hsa-miR-548t-5p	PAR-CLIP	24398324
MIRT501141	hsa-miR-3614-5p	PAR-CLIP	24398324
MIRT501140	hsa-miR-6500-3p	PAR-CLIP	24398324
MIRT501139	hsa-miR-203a-3p	PAR-CLIP	24398324
MIRT296117	hsa-miR-7703	PAR-CLIP	24398324
MIRT501138	hsa-miR-4325	PAR-CLIP	24398324
MIRT491373	hsa-miR-433-5p	PAR-CLIP	23592263
MIRT491372	hsa-miR-4285	PAR-CLIP	23592263
MIRT491371	hsa-miR-2277-3p	PAR-CLIP	23592263
MIRT491370	hsa-miR-4479	PAR-CLIP	23592263
MIRT491369	hsa-miR-3178	PAR-CLIP	23592263
MIRT491367	hsa-miR-1237-5p	PAR-CLIP	23592263
MIRT491368	hsa-miR-4488	PAR-CLIP	23592263
MIRT491366	hsa-miR-4697-5p	PAR-CLIP	23592263
MIRT491365	hsa-miR-328-5p	PAR-CLIP	23592263
MIRT491364	hsa-miR-6885-5p	PAR-CLIP	23592263
MIRT491363	hsa-miR-542-3p	PAR-CLIP	23592263
MIRT501141	hsa-miR-3614-5p	HITS-CLIP	23824327
MIRT501140	hsa-miR-6500-3p	HITS-CLIP	23824327
MIRT653758	hsa-miR-6840-3p	HITS-CLIP	23824327
MIRT653757	hsa-miR-4726-3p	HITS-CLIP	23824327
MIRT653756	hsa-miR-6887-3p	HITS-CLIP	23824327
MIRT653755	hsa-miR-4667-3p	HITS-CLIP	23824327
MIRT653754	hsa-miR-5193	HITS-CLIP	23824327
MIRT653753	hsa-miR-6075	HITS-CLIP	23824327
MIRT653752	hsa-miR-4469	HITS-CLIP	23824327
MIRT653751	hsa-miR-4313	HITS-CLIP	23824327
MIRT653750	hsa-miR-4433a-5p	HITS-CLIP	23824327
MIRT653749	hsa-miR-6749-3p	HITS-CLIP	23824327
MIRT653748	hsa-miR-4433b-5p	HITS-CLIP	23824327
MIRT653747	hsa-miR-4646-3p	HITS-CLIP	23824327
MIRT501145	hsa-miR-224-5p	PAR-CLIP	24398324
MIRT296112	hsa-miR-92a-3p	PAR-CLIP	24398324
MIRT296116	hsa-miR-92b-3p	PAR-CLIP	24398324
MIRT296114	hsa-miR-367-3p	PAR-CLIP	24398324
MIRT296113	hsa-miR-363-3p	PAR-CLIP	24398324
MIRT296111	hsa-miR-32-5p	PAR-CLIP	24398324
MIRT296110	hsa-miR-25-3p	PAR-CLIP	24398324
MIRT501144	hsa-miR-548n	PAR-CLIP	24398324
MIRT501143	hsa-miR-548az-5p	PAR-CLIP	24398324
MIRT501142	hsa-miR-548t-5p	PAR-CLIP	24398324
MIRT501141	hsa-miR-3614-5p	PAR-CLIP	24398324
MIRT501140	hsa-miR-6500-3p	PAR-CLIP	24398324
MIRT501139	hsa-miR-203a-3p	PAR-CLIP	24398324
MIRT296117	hsa-miR-7703	PAR-CLIP	24398324
MIRT501138	hsa-miR-4325	PAR-CLIP	24398324
MIRT491373	hsa-miR-433-5p	PAR-CLIP	23592263
MIRT491372	hsa-miR-4285	PAR-CLIP	23592263
MIRT491371	hsa-miR-2277-3p	PAR-CLIP	23592263
MIRT491370	hsa-miR-4479	PAR-CLIP	23592263
MIRT491369	hsa-miR-3178	PAR-CLIP	23592263
MIRT491367	hsa-miR-1237-5p	PAR-CLIP	23592263
MIRT491368	hsa-miR-4488	PAR-CLIP	23592263
MIRT491366	hsa-miR-4697-5p	PAR-CLIP	23592263
MIRT491365	hsa-miR-328-5p	PAR-CLIP	23592263
MIRT491364	hsa-miR-6885-5p	PAR-CLIP	23592263
MIRT491363	hsa-miR-542-3p	PAR-CLIP	23592263
MIRT1352020	hsa-miR-1294	CLIP-seq
MIRT1352021	hsa-miR-1305	CLIP-seq
MIRT1352022	hsa-miR-191	CLIP-seq
MIRT1352023	hsa-miR-1972	CLIP-seq
MIRT1352024	hsa-miR-203	CLIP-seq
MIRT1352025	hsa-miR-25	CLIP-seq
MIRT1352026	hsa-miR-3157-3p	CLIP-seq
MIRT1352027	hsa-miR-32	CLIP-seq
MIRT1352028	hsa-miR-3202	CLIP-seq
MIRT1352029	hsa-miR-33a	CLIP-seq
MIRT1352030	hsa-miR-33b	CLIP-seq
MIRT1352031	hsa-miR-34c-3p	CLIP-seq
MIRT1352032	hsa-miR-363	CLIP-seq
MIRT1352033	hsa-miR-367	CLIP-seq
MIRT1352034	hsa-miR-4271	CLIP-seq
MIRT1352035	hsa-miR-4317	CLIP-seq
MIRT1352036	hsa-miR-4650-5p	CLIP-seq
MIRT1352037	hsa-miR-4707-5p	CLIP-seq
MIRT1352038	hsa-miR-4710	CLIP-seq
MIRT1352039	hsa-miR-4725-3p	CLIP-seq
MIRT1352040	hsa-miR-4747-5p	CLIP-seq
MIRT1352041	hsa-miR-4792	CLIP-seq
MIRT1352042	hsa-miR-548t	CLIP-seq
MIRT1352043	hsa-miR-583	CLIP-seq
MIRT1352044	hsa-miR-624	CLIP-seq
MIRT1352045	hsa-miR-874	CLIP-seq
MIRT1352046	hsa-miR-92a	CLIP-seq
MIRT1352047	hsa-miR-92b	CLIP-seq
MIRT1352048	hsa-miR-941	CLIP-seq
MIRT1352049	hsa-miR-95	CLIP-seq
MIRT1352050	hsa-miR-1183	CLIP-seq
MIRT1352051	hsa-miR-1200	CLIP-seq
MIRT1352052	hsa-miR-1281	CLIP-seq
MIRT1352020	hsa-miR-1294	CLIP-seq
MIRT1352021	hsa-miR-1305	CLIP-seq
MIRT1352053	hsa-miR-139-5p	CLIP-seq
MIRT1352054	hsa-miR-142-5p	CLIP-seq
MIRT1352055	hsa-miR-146b-3p	CLIP-seq
MIRT1352056	hsa-miR-1538	CLIP-seq
MIRT1352057	hsa-miR-1911	CLIP-seq
MIRT1352058	hsa-miR-1912	CLIP-seq
MIRT1352024	hsa-miR-203	CLIP-seq
MIRT1352059	hsa-miR-224	CLIP-seq
MIRT1352025	hsa-miR-25	CLIP-seq
MIRT1352060	hsa-miR-3130-5p	CLIP-seq
MIRT1352061	hsa-miR-3135b	CLIP-seq
MIRT1352026	hsa-miR-3157-3p	CLIP-seq
MIRT1352062	hsa-miR-3173-5p	CLIP-seq
MIRT1352027	hsa-miR-32	CLIP-seq
MIRT1352029	hsa-miR-33a	CLIP-seq
MIRT1352030	hsa-miR-33b	CLIP-seq
MIRT1352063	hsa-miR-340	CLIP-seq
MIRT1352032	hsa-miR-363	CLIP-seq
MIRT1352064	hsa-miR-3652	CLIP-seq
MIRT1352033	hsa-miR-367	CLIP-seq
MIRT1352065	hsa-miR-3689d	CLIP-seq
MIRT1352066	hsa-miR-371b-3p	CLIP-seq
MIRT1352067	hsa-miR-376c	CLIP-seq
MIRT1352068	hsa-miR-4267	CLIP-seq
MIRT1352069	hsa-miR-4269	CLIP-seq
MIRT1352070	hsa-miR-4274	CLIP-seq
MIRT1352071	hsa-miR-4283	CLIP-seq
MIRT1352035	hsa-miR-4317	CLIP-seq
MIRT1352072	hsa-miR-4430	CLIP-seq
MIRT1352073	hsa-miR-4482	CLIP-seq
MIRT1352074	hsa-miR-4489	CLIP-seq
MIRT1352075	hsa-miR-4492	CLIP-seq
MIRT1352076	hsa-miR-4498	CLIP-seq
MIRT1352077	hsa-miR-450b-5p	CLIP-seq
MIRT1352078	hsa-miR-4514	CLIP-seq
MIRT1352079	hsa-miR-4519	CLIP-seq
MIRT1352080	hsa-miR-455-5p	CLIP-seq
MIRT1352081	hsa-miR-4632	CLIP-seq
MIRT1352036	hsa-miR-4650-5p	CLIP-seq
MIRT1352082	hsa-miR-4665-3p	CLIP-seq
MIRT1352083	hsa-miR-4692	CLIP-seq
MIRT1352084	hsa-miR-4699-3p	CLIP-seq
MIRT1352038	hsa-miR-4710	CLIP-seq
MIRT1352085	hsa-miR-4740-3p	CLIP-seq
MIRT1352086	hsa-miR-4742-5p	CLIP-seq
MIRT1352087	hsa-miR-4745-3p	CLIP-seq
MIRT1352088	hsa-miR-4747-3p	CLIP-seq
MIRT1352089	hsa-miR-4757-5p	CLIP-seq
MIRT1352090	hsa-miR-4758-3p	CLIP-seq
MIRT1352091	hsa-miR-4781-5p	CLIP-seq
MIRT1352092	hsa-miR-4790-3p	CLIP-seq
MIRT1352041	hsa-miR-4792	CLIP-seq
MIRT1352093	hsa-miR-494	CLIP-seq
MIRT1352094	hsa-miR-503	CLIP-seq
MIRT1352095	hsa-miR-516a-3p	CLIP-seq
MIRT1352042	hsa-miR-548t	CLIP-seq
MIRT1352043	hsa-miR-583	CLIP-seq
MIRT1352096	hsa-miR-606	CLIP-seq
MIRT1352044	hsa-miR-624	CLIP-seq
MIRT1352097	hsa-miR-633	CLIP-seq
MIRT1352098	hsa-miR-659	CLIP-seq
MIRT1352099	hsa-miR-762	CLIP-seq
MIRT1352100	hsa-miR-766	CLIP-seq
MIRT1352045	hsa-miR-874	CLIP-seq
MIRT1352101	hsa-miR-885-3p	CLIP-seq
MIRT1352046	hsa-miR-92a	CLIP-seq
MIRT1352047	hsa-miR-92b	CLIP-seq
MIRT1352102	hsa-miR-940	CLIP-seq
MIRT1921305	hsa-miR-1224-3p	CLIP-seq
MIRT1921306	hsa-miR-1260	CLIP-seq
MIRT1921307	hsa-miR-1260b	CLIP-seq
MIRT1921308	hsa-miR-1280	CLIP-seq
MIRT1921309	hsa-miR-188-3p	CLIP-seq
MIRT1921310	hsa-miR-3156-3p	CLIP-seq
MIRT1921311	hsa-miR-4297	CLIP-seq
MIRT2104317	hsa-miR-1915	CLIP-seq
MIRT1352101	hsa-miR-885-3p	CLIP-seq
MIRT1352068	hsa-miR-4267	CLIP-seq
MIRT1352021	hsa-miR-1305	CLIP-seq
MIRT2459457	hsa-miR-1292	CLIP-seq
MIRT2459458	hsa-miR-1321	CLIP-seq
MIRT2104317	hsa-miR-1915	CLIP-seq
MIRT2459459	hsa-miR-4270	CLIP-seq
MIRT2459460	hsa-miR-4437	CLIP-seq
MIRT2459461	hsa-miR-4441	CLIP-seq
MIRT1352038	hsa-miR-4710	CLIP-seq
MIRT2459462	hsa-miR-4717-5p	CLIP-seq
MIRT2459463	hsa-miR-4739	CLIP-seq
MIRT2459464	hsa-miR-4756-5p	CLIP-seq
MIRT1352041	hsa-miR-4792	CLIP-seq
MIRT1352043	hsa-miR-583	CLIP-seq

Show/Hide all(59)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005886	Component	Plasma membrane	IBA
GO:0005886	Component	Plasma membrane	IEA
GO:0005886	Component	Plasma membrane	TAS
GO:0006811	Process	Monoatomic ion transport	IDA	12106695
GO:0006811	Process	Monoatomic ion transport	IEA
GO:0006811	Process	Monoatomic ion transport	TAS
GO:0006813	Process	Potassium ion transport	IEA
GO:0006821	Process	Chloride transport	IEA
GO:0006821	Process	Chloride transport	IEA
GO:0006884	Process	Cell volume homeostasis	IBA
GO:0006971	Process	Hypotonic response	IDA	12106695
GO:0007268	Process	Chemical synaptic transmission	IBA
GO:0007268	Process	Chemical synaptic transmission	IEA
GO:0007612	Process	Learning	IEA
GO:0008519	Function	Ammonium channel activity	IEA
GO:0009410	Process	Response to xenobiotic stimulus	IEA
GO:0015108	Function	Chloride transmembrane transporter activity	IDA	26333769
GO:0015293	Function	Symporter activity	IEA
GO:0015377	Function	Chloride:monoatomic cation symporter activity	IEA
GO:0015379	Function	Potassium:chloride symporter activity	IBA
GO:0015379	Function	Potassium:chloride symporter activity	IDA	12106695
GO:0015379	Function	Potassium:chloride symporter activity	IEA
GO:0015379	Function	Potassium:chloride symporter activity	TAS
GO:0016020	Component	Membrane	IDA	12106695
GO:0016020	Component	Membrane	IEA
GO:0019901	Function	Protein kinase binding	IEA
GO:0019901	Function	Protein kinase binding	IPI	24393035
GO:0022857	Function	Transmembrane transporter activity	IEA
GO:0030425	Component	Dendrite	IEA
GO:0030644	Process	Intracellular chloride ion homeostasis	IDA	26333769
GO:0032502	Process	Developmental process	IEA
GO:0032590	Component	Dendrite membrane	IEA
GO:0035264	Process	Multicellular organism growth	IEA
GO:0040040	Process	Thermosensory behavior	IEA
GO:0042995	Component	Cell projection	IEA
GO:0043005	Component	Neuron projection	IDA	16227993
GO:0043005	Component	Neuron projection	IEA
GO:0043025	Component	Neuronal cell body	IDA	16227993
GO:0043025	Component	Neuronal cell body	IEA
GO:0043025	Component	Neuronal cell body	ISS
GO:0043204	Component	Perikaryon	IEA
GO:0046872	Function	Metal ion binding	IEA
GO:0051452	Process	Intracellular pH reduction	IEA
GO:0055064	Process	Chloride ion homeostasis	IBA
GO:0055075	Process	Potassium ion homeostasis	IBA
GO:0055085	Process	Transmembrane transport	IEA
GO:0060996	Process	Dendritic spine development	IDA	24668262
GO:0060996	Process	Dendritic spine development	IEA
GO:0071805	Process	Potassium ion transmembrane transport	IEA
GO:0071944	Component	Cell periphery	IDA	16227993
GO:0071944	Component	Cell periphery	IEA
GO:0071944	Component	Cell periphery	ISS
GO:0072488	Process	Ammonium transmembrane transport	IEA
GO:0098970	Process	Postsynaptic neurotransmitter receptor diffusion trapping	IEA
GO:0098978	Component	Glutamatergic synapse	IEA
GO:0099634	Component	Postsynaptic specialization membrane	IEA
GO:0150052	Process	Regulation of postsynapse assembly	IEA
GO:1902476	Process	Chloride transmembrane transport	IBA
GO:1990573	Process	Potassium ion import across plasma membrane	IBA

MIM	HGNC	e!Ensembl
606726	13818	ENSG00000124140

Protein

UniProt ID

Q9H2X9

Protein name

Solute carrier family 12 member 5 (Electroneutral potassium-chloride cotransporter 2) (K-Cl cotransporter 2) (hKCC2) (Neuronal K-Cl cotransporter)

Protein function

Mediates electroneutral potassium-chloride cotransport in mature neurons and is required for neuronal Cl(-) homeostasis (PubMed:12106695). As major extruder of intracellular chloride, it establishes the low neuronal Cl(-) levels required for chl

PDB

6M23 , 7D8Z

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00324	AA_permease	125 → 328	Amino acid permease	Family
PF00324	AA_permease	412 → 699	Amino acid permease	Family
PF03522	SLC12	711 → 837	Solute carrier family 12	Family
PF03522	SLC12	830 → 983	Solute carrier family 12	Family
PF03522	SLC12	1030 → 1139	Solute carrier family 12	Family

Tissue specificity

TISSUE SPECIFICITY: Brain specific. Detected in neuronal cells. {ECO:0000269|PubMed:12106695}.

Sequence

MSRRFTVTSLPPAGPARSPDPESRRHSVADPRHLPGEDVKGDGNPKESSPFINSTDTEKG
KEYDGKNMALFEEEMDTSPMVSSLLSGLANYTNLPQGSREHEEAENNEGGKKKPVQAPRM
GTFMGVYLPCLQNIFGVILFLRLTWVVGIAGIMESFCMVFICCSCTMLTAISMSAIATNG
VVPAGGSYYMISRSLGPEFGGAVGLCFYLGTTFAGAMYILGTIEILLAYLFPAMAIFKAE
DASGEAAAMLNNMRVYGTCVLTCMATVVFVGVKYVNKFALVFLGCVILSILAIYAGVIKS
AFDPPNFPICLLGNRTLSRHGFDVCAKLAWEGNETVTTRLWGLFCSSRFLNATCDEYFTR
NNVTEIQGIPGAASGLIKENLWSSYLTKGVIVERSGMTSVGLADGTPIDMDHPYVFSDMT
SYFTLLVGIYFPSVTGIMAGSNRSGDLRDAQKSIPTGTILAIATTSAVYISSVVLFGACI
EGVVLRDKFGEAVNGNLVVGTLAWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAISRDG
IVPFLQVFGHGKANGEPTWALLLTACICEIGILIASLDEVAPILSMFFLMCYMFVNLACA
VQTLLRTPNWRPRFRYYHWTLSFLGMSLCLALMFICSWYYALVAMLIAGLIYKYIEYRGA
EKEWGDGIRGLSLSAARYALLRLEEGPPHTKNWRPQLLVLVRVDQDQNVVHPQLLSLTSQ
LKAGKGLTIVGSVLEGTFLENHPQAQRAEESIRRLMEAEKVKGFCQVVISSNLRDGVSHL
IQSGGLGGLQHNTVLVGWPRNWRQKEDHQTWRNFIELVRETTAGHLALLVTKNVSMFPGN
PERFSEGSIDVWWIVHDGGMLMLLPFLLRHHKVWRKCKMRIFTVAQMDDNSIQMKKDLTT
FLYHLRITAEVEVVEMHESDISAYTYEKTLVMEQRSQILKQMHLTKNEREREIQSITDES
RGSIRRKNPANTRLRLNVPEETAGDSEEKPEEEVQLIHDQSAPSCPSSSPSPGEEPEGEG
ETDPEKVHLTWTKDKSVAEKNKGPSPVSSEGIKDFFSMKPEWENLNQSNVRRMHTAVRLN
EVIVKKSRDAKLVLLNMPGPPRNRNGDENYMEFLEVLTEHLDRVMLVRGGGREVITIYS

Sequence length

1139

Interactions

View interactions

	KEGG		Reactome
	GABAergic synapse		Cation-coupled Chloride cotransporters

Show/Hide Causal Diseases (1)

Disease merge term	Disease name	dbSNP ID	References
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Developmental And Epileptic Encephalopathy	Developmental and epileptic encephalopathy, 34	rs2084483775, rs863225304, rs863225305, rs863225306, rs1555863593, rs1555868402, rs1555863145, rs1600590580, rs2084489672, rs2084648529	N/A

Show/Hide Unknown Diseases (4)

Disease merge term	Disease name	Evidence	References	Source
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Epilepsy	epilepsy of infancy with migrating focal seizures, Epilepsy, idiopathic generalized, susceptibility to, 14, epilepsy, idiopathic generalized, susceptibility to, 14	N/A	N/A	GenCC, ClinVar
Malignant migrating partial seizures of infancy	malignant migrating partial seizures of infancy	N/A	N/A	GenCC
Microcephaly	microcephaly	N/A	N/A	ClinVar
Neuroticism	Neuroticism	N/A	N/A	GWAS

Show/Hide Text Mining Associations (49)

Disease Name	Relationship Type	References
Associations from Text Mining Disease associations identified through Pubtator
Alzheimer Disease	Associate	37149819, 39650656
Arthritis Rheumatoid	Associate	26350950
Autistic Disorder	Associate	40074080
beta Thalassemia	Stimulate	18024369
Breast Neoplasms	Associate	39370816
Carcinogenesis	Stimulate	36645171
Carcinoma Hepatocellular	Associate	33399102
Carcinoma Hepatocellular	Stimulate	36645171
Cell Transformation Neoplastic	Associate	36645171
Colorectal Neoplasms	Associate	24699064, 25947013
Depressive Disorder Major	Associate	22496567
Developmental Disabilities	Associate	27436767, 40074080
Diabetes Mellitus Type 2	Associate	18602983
Epilepsy	Associate	17284302, 24928907, 27436767, 32064760, 37095367, 40074080
Epilepsy Idiopathic Generalized	Associate	34573383
Focal cortical dysplasia of Taylor	Associate	17284302
Focal cortical dysplasia of Taylor	Inhibit	22447678
Glioblastoma	Associate	32510239, 33423377
Glioma	Associate	25009229
Hypersensitivity Delayed	Associate	31796123
Hypothalamic hamartomas	Associate	18076645, 18675803
Hypothalamic hamartomas	Inhibit	25307426
Intellectual Disability	Associate	35678782
Kidney Failure Chronic	Associate	18602983
Leukoencephalopathies	Associate	20467335
Lymphatic Metastasis	Associate	28333147
Malformations of Cortical Development	Associate	17284302
Mental Disorders	Associate	32064760
Mood Disorders	Associate	22496567
Multifocal Choroiditis	Associate	27436767
Neoplasm Metastasis	Stimulate	25947013, 32449280
Neoplasm Metastasis	Associate	28333147
Neoplasms	Associate	21911617, 28333147, 32449280, 34630736, 35361846, 36645171, 39370816
Neoplasms	Stimulate	25947013, 36609444
Neurodevelopmental Disorders	Associate	31796123
Neurologic Manifestations	Associate	36609444
Prostatic Neoplasms	Stimulate	36609444
Prostatic Neoplasms Castration Resistant	Stimulate	36609444
Rett Syndrome	Inhibit	23894354
Rett Syndrome	Associate	31796123
Schizophrenia	Associate	22496567, 40074080
Seizures	Associate	18076645, 25307426, 27436767, 32064760
Seizures Febrile	Associate	35414199
Thyroid Cancer Papillary	Associate	35280112
Tuberous Sclerosis	Associate	22447678
Urinary Bladder Neoplasms	Associate	28333147
Urinary Bladder Neoplasms	Stimulate	32449280
Uterine Cervical Neoplasms	Associate	21911617
Uterine Cervicitis	Associate	21911617

SLC12A5 (solute carrier family 12 member 5)