Gene Gene information from NCBI Gene database.
Entrez ID 57449
Gene name Pleckstrin homology and RhoGEF domain containing G5
Gene symbol PLEKHG5
Synonyms (NCBI Gene)
ARHGEF45CMTRICDSMA4GEF720HMNR4SyxTech
Chromosome 1
Chromosome location 1p36.31
Summary This gene encodes a protein that activates the nuclear factor kappa B (NFKB1) signaling pathway. Mutations in this gene are associated with autosomal recessive distal spinal muscular atrophy. Multiple transcript variants encoding different isoforms have b
SNPs SNP information provided by dbSNP.
33
SNP ID Visualize variation Clinical significance Consequence
rs61730399 C>T Uncertain-significance, likely-benign, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
rs63750315 A>G Uncertain-significance, pathogenic Missense variant, coding sequence variant
rs77134982 G>A,C Likely-benign, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
rs111400494 G>A,C Uncertain-significance, conflicting-interpretations-of-pathogenicity Missense variant, coding sequence variant
rs139041955 C>G,T Conflicting-interpretations-of-pathogenicity Intron variant
miRNA miRNA information provided by mirtarbase database.
119
miRTarBase ID miRNA Experiments Reference
MIRT535162 hsa-miR-6732-3p PAR-CLIP 22012620
MIRT535161 hsa-miR-1255b-2-3p PAR-CLIP 22012620
MIRT535160 hsa-miR-6793-3p PAR-CLIP 22012620
MIRT535159 hsa-miR-125a-5p PAR-CLIP 22012620
MIRT535158 hsa-miR-125b-5p PAR-CLIP 22012620
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
23
GO ID Ontology Definition Evidence Reference
GO:0005085 Function Guanyl-nucleotide exchange factor activity IEA
GO:0005085 Function Guanyl-nucleotide exchange factor activity TAS
GO:0005515 Function Protein binding IPI 32296183
GO:0005737 Component Cytoplasm IEA
GO:0005737 Component Cytoplasm ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
611101 29105 ENSG00000171680
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
O94827
Protein name Pleckstrin homology domain-containing family G member 5 (PH domain-containing family G member 5) (Guanine nucleotide exchange factor 720) (GEF720)
Protein function Functions as a guanine exchange factor (GEF) for RAB26 and thus regulates autophagy of synaptic vesicles in axon terminal of motoneurons (By similarity). Involved in the control of neuronal cell differentiation (PubMed:11704860). Plays a role in
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00621 RhoGEF 396 582 RhoGEF domain Domain
Tissue specificity TISSUE SPECIFICITY: Predominantly expressed in the peripheral nervous system and brain. Highest expression is observed in heart, lung, kidney, testis and moderate expression is present in spleen, pancreas, skeletal muscle, ovary and liver. Weakly expresse
Sequence
MDDQSPAEKKGLRCQNPACMDKGRAAKVCHHADCQQLHRRGPLNLCEACDSKFHSTMHYD
GHVRFDLPPQGSVLARNVSTRSCPPRTSPAVDLEEEEEESSVDGKGDRKSTGLKLSKKKA
RRRHTDDPSKECFTLKFDLNVDIETEIVPAMKKKSLGEVLLPVFERKGIALGKVDIYLDQ
SNTPLSLTFEAYRFGGHYLRVKAPAKPGDEGKVEQGMKDSKSLSLPILRPAGTGPPALER
VDAQSRRESLDILAPGRRRKNMSEFLGEASIPGQEPPTPSSCSLPSGSSGSTNTGDSWKN
RAASRFSGFFSSGPSTSAFGREVDKMEQLEGKLHTYSLFGLPRLPRGLRFDHDSWEEEYD
EDEDEDNACLRLEDSWRELIDGHEKLTRRQCHQQEAVWELLHTEASYIRKLRVIINLFLC
CLLNLQESGLLCEVEAERLFSNIPEIAQLHRRLWASVMAPVLEKARRTRALLQPGDFLKG
FKMFGSLFKPYIRYCMEEEGCMEYMRGLLRDNDLFRAYITWAEKHPQCQRLKLSDMLAKP
HQRLTKYPLLLKSVLRKTEEPRAKEAVVAMIGSVERFIHHVN
ACMRQRQERQRLAAVVSR
IDAYEVVESSSDEVDKLLKEFLHLDLTAPIPGASPEETRQLLLEGSLRMKEGKDSKMDVY
CFLFTDLLLVTKAVKKAERTRVIRPPLLVDKIVCRELRDPGSFLLIYLNEFHSAVGAYTF
QASGQALCRGWVDTIYNAQNQLQQLRAQEPPGSQQPLQSLEEEEDEQEEEEEEEEEEEEG
EDSGTSAASSPTIMRKSSGSPDSQHCASDGSTETLAMVVVEPGDTLSSPEFDSGPFSSQS
DETSLSTTASSATPTSELLPLGPVDGRSCSMDSAYGTLSPTSLQDFVAPGPMAELVPRAP
ESPRVPSPPPSPRLRRRTPVQLLSCPPHLLKSKSEASLLQLLAGAGTHGTPSAPSRSLSE
LCLAVPAPGIRTQGSPQEAGPSWDCRGAPSPGSGPGLVGCLAGEPAGSHRKRCGDLPSGA
SPRVQPEPPPGVSAQHRKLTLAQLYRIRTTLLLNSTLTASEV
Sequence length 1062
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Pathways in cancer   NRAGE signals death through JNK
Rho GTPase cycle
G alpha (12/13) signalling events
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
2444
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Charcot-Marie-Tooth disease recessive intermediate C Likely pathogenic; Pathogenic rs184242303, rs376900021, rs760122001, rs1557742277, rs1266507622, rs1443592761, rs2148578668, rs2148591365, rs2148585199, rs2148627334, rs1199089543, rs778854412, rs773188120, rs1405080200, rs2523172908
View all (42 more)
RCV001386746
RCV001381013
RCV001865928
RCV001808192
RCV001957293
RCV001941748
RCV001941592
RCV001935762
RCV001983871
RCV002254402
RCV003775165
RCV003775368
RCV002587493
RCV002721747
RCV002815184
RCV002877609
RCV002872275
RCV002948785
RCV003048576
RCV003782829
RCV003780742
RCV003793038
RCV003808324
RCV003804495
RCV003806903
RCV003791440
RCV003791827
RCV003805788
RCV003803711
RCV003804355
RCV003797504
RCV003797534
RCV003805294
RCV003802597
RCV003808775
RCV003808903
RCV003804584
RCV003802170
RCV003817862
RCV003813536
RCV003809857
RCV003810009
RCV003815600
RCV003812834
RCV003810207
RCV000526332
RCV000807298
RCV002289881
RCV000685826
RCV000820951
RCV000054544
RCV000054545
RCV001065654
RCV001061161
RCV001036975
RCV001048908
RCV001222295
RCV001237754
Glioma susceptibility 1 Likely pathogenic rs1553174500 RCV005901192
Hereditary spastic paraplegia Likely pathogenic rs910474236 RCV001027499
Juvenile amyotrophic lateral sclerosis Likely pathogenic; Pathogenic rs1644506661, rs1435710212 RCV001095533
RCV001095532
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Benign rs2986742, rs3007429, rs943584, rs11806429 RCV005923109
RCV005886780
RCV005891728
RCV005896490
Cholangiocarcinoma Benign rs41278014 RCV005902178
Distal spinal muscular atrophy Benign; Likely benign; Uncertain significance; Conflicting classifications of pathogenicity rs113541584, rs553519753, rs527883968, rs45616733, rs45542640, rs536097668, rs751575330, rs372197062, rs886046493 RCV000320159
RCV000344475
RCV000326084
RCV000302421
RCV000361894
RCV000377811
RCV000268467
RCV000373626
RCV000281434
RCV000304183
RCV000402408
Familial cancer of breast Uncertain significance rs767686554 RCV005913590
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Alcoholic Neuropathy Associate 23844677
Amyotrophic Lateral Sclerosis Associate 25681989
Breast Neoplasms Associate 24126053
Bundle Branch Block Associate 33567613
Cardiomyopathy Right Ventricular Dilated Associate 33567613
Charcot Marie Tooth Disease Associate 23844677, 34897098
Charcot Marie Tooth Disease Recessive Intermediate A Associate 23844677, 34897098
Charcot Marie Tooth disease Type 2B Associate 34897098
Demyelinating Diseases Associate 23844677
Glioblastoma Associate 33318498, 35639414, 37427593