Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
5727
Gene name Gene Name - the full gene name approved by the HGNC.
Patched 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PTCH1
Synonyms (NCBI Gene) Gene synonyms aliases
BCNS, BCNS1, NBCCS, PTC, PTC1, PTCH, SLC65B1
Chromosome Chromosome number
9
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
9q22.32
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the patched family of proteins and a component of the hedgehog signaling pathway. Hedgehog signaling is important in embryonic development and tumorigenesis. The encoded protein is the receptor for the secreted hedgehog ligan
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs138911275 G>A Pathogenic, likely-benign Coding sequence variant, non coding transcript variant, missense variant, genic downstream transcript variant
rs142274954 C>T Conflicting-interpretations-of-pathogenicity, likely-benign, uncertain-significance, benign Genic downstream transcript variant, non coding transcript variant, missense variant, coding sequence variant
rs143091773 T>-,TT Pathogenic Genic downstream transcript variant, non coding transcript variant, frameshift variant, coding sequence variant
rs143494325 C>A,G,T Likely-benign, conflicting-interpretations-of-pathogenicity, uncertain-significance, benign Intron variant, genic upstream transcript variant, missense variant, upstream transcript variant, non coding transcript variant, coding sequence variant
rs145867500 A>C,G Likely-benign, pathogenic Stop gained, genic downstream transcript variant, synonymous variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT006293 hsa-miR-212-3p Luciferase reporter assay, qRT-PCR, Western blot 22357618
MIRT006293 hsa-miR-212-3p Luciferase reporter assay, qRT-PCR, Western blot 22357618
MIRT006293 hsa-miR-212-3p Luciferase reporter assay, qRT-PCR, Western blot 22357618
MIRT006293 hsa-miR-212-3p Luciferase reporter assay, qRT-PCR, Western blot 22357618
MIRT006293 hsa-miR-212-3p Luciferase reporter assay, qRT-PCR, Western blot 22357618
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IMP 16229683
GO:0001658 Process Branching involved in ureteric bud morphogenesis IEA
GO:0001701 Process In utero embryonic development IEA
GO:0001709 Process Cell fate determination IEA
GO:0001841 Process Neural tube formation IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
601309 9585 ENSG00000185920
Protein
UniProt ID Q13635
Protein name Protein patched homolog 1 (PTC) (PTC1)
Protein function Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal. Seems to have a tumor suppressor function, as inactivation of
PDB 6DMB , 6DMO , 6DMY , 6E1H , 6N7G , 6N7H , 6N7K , 6OEU , 6OEV , 6RMG , 6RTW , 6RTX , 6RTY , 6RVC , 6RVD
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02460 Patched 358 875 Patched family Family
PF02460 Patched 966 1180 Patched family Family
Tissue specificity TISSUE SPECIFICITY: In the adult, expressed in brain, lung, liver, heart, placenta, skeletal muscle, pancreas and kidney. Expressed in tumor cells but not in normal skin.
Sequence
MASAGNAAEPQDRGGGGSGCIGAPGRPAGGGRRRRTGGLRRAAAPDRDYLHRPSYCDAAF
ALEQISKGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAAN
LETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPKEEGANVLTTEALLQHLD
SALQASRVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAK
LQSGTAYLLGKPPLRWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPA
DPDCPATAPNKNSTKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHAL
QTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRTYVEVVHQSVAQNSTQKVL
SFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAVGLAGVLLVALS
VAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGEC
LKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDL
YRREDRRLDIFCCFTSPCVSRVIQVEPQAYTDTHDNTRYSPPPPYSSHSFAHETQITMQS
TVQLRTEYDPHTHVYYTTAEPRSEISVQPVTVTQDTLSCQSPESTSSTRDLLSQFSDSSL
HCLEPPCTKWTLSSFAEKHYAPFLLKPKAKVVVIFLFLGLLGVSLYGTTRVRDGLDLTDI
VPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDLHRSFSNVKYVMLEENKQL
PKMWLHYFRDWLQGLQDAFDSDWETGKIMPNNYKN
GSDDGVLAYKLLVQTGSRDKPIDIS
QLTKQRLVDADGIINPSAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETR
LRIPAAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICSNYTSLGLSSYPNGYPFLFWEQ
YIGLRHWLLLFISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSA
VPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLML
AGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGP
YPEVSPANGLNRLPTPSPEP
PPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGAGGPAHQVIVEATE
NPVFAHSTVVHPESRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDPPREGLWPPPYRPRR
DAFEISTEGHSGPSNRARWGPRGARSHNPRNPASTAMGSSVPGYCQPITTVTASASVTVA
VHPPPVPGPGRNPRGGLCPGYPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEER
PRGSSSN
Sequence length 1447
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  cAMP signaling pathway
Hedgehog signaling pathway
Axon guidance
Pathways in cancer
Proteoglycans in cancer
Basal cell carcinoma
  Hedgehog 'off' state
Ligand-receptor interactions
Hedgehog 'on' state
Activation of SMO
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Anophthalmia/Microphthalmia-Esophageal Atresia Syndrome Anophthalmia-microphthalmia syndrome rs869025270 N/A
Basal Cell Neoplasm Basal cell nevus syndrome 1 rs2118041703, rs1064793921, rs2136689212, rs878853849, rs1588568813, rs1554695110, rs2118336503, rs1588605348, rs2117956624, rs1587692888, rs2118419579, rs267606984, rs2118365442 N/A
Carcinoma Basal cell carcinoma, susceptibility to, 1 rs1564055259 N/A
Congenital Hydrocephalus congenital hydrocephalus rs1588574984, rs1588622713 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
acute myeloid leukemia Acute myeloid leukemia N/A N/A ClinVar
Anterior segment dysgenesis Irido-corneo-trabecular dysgenesis N/A N/A ClinVar
Anxiety Disorder Anxiety N/A N/A GWAS
Asthma Asthma N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Associate 17461467, 20609239
Adenomatous Polyposis Coli Associate 39519399, 9916927
Adrenal Gland Neoplasms Associate 9703361
Adrenocortical Carcinoma Associate 25078331
Allanson Pantzar McLeod syndrome Associate 30181650
Ameloblastoma Associate 22952776, 27386018, 33144428
Aneurysm Inhibit 24768363
Asthma Associate 25997986
Astrocytoma Associate 20223881, 21059263
Ataxia Telangiectasia Associate 19500021