Gene Gene information from NCBI Gene database.
Entrez ID 5727
Gene name Patched 1
Gene symbol PTCH1
Synonyms (NCBI Gene)
BCNSBCNS1NBCCSPTCPTC1PTCHSLC65B1
Chromosome 9
Chromosome location 9q22.32
Summary This gene encodes a member of the patched family of proteins and a component of the hedgehog signaling pathway. Hedgehog signaling is important in embryonic development and tumorigenesis. The encoded protein is the receptor for the secreted hedgehog ligan
SNPs SNP information provided by dbSNP.
188
SNP ID Visualize variation Clinical significance Consequence
rs138911275 G>A Pathogenic, likely-benign Coding sequence variant, non coding transcript variant, missense variant, genic downstream transcript variant
rs142274954 C>T Conflicting-interpretations-of-pathogenicity, likely-benign, uncertain-significance, benign Genic downstream transcript variant, non coding transcript variant, missense variant, coding sequence variant
rs143091773 T>-,TT Pathogenic Genic downstream transcript variant, non coding transcript variant, frameshift variant, coding sequence variant
rs143494325 C>A,G,T Likely-benign, conflicting-interpretations-of-pathogenicity, uncertain-significance, benign Intron variant, genic upstream transcript variant, missense variant, upstream transcript variant, non coding transcript variant, coding sequence variant
rs145867500 A>C,G Likely-benign, pathogenic Stop gained, genic downstream transcript variant, synonymous variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
418
miRTarBase ID miRNA Experiments Reference
MIRT006293 hsa-miR-212-3p Luciferase reporter assayqRT-PCRWestern blot 22357618
MIRT006293 hsa-miR-212-3p Luciferase reporter assayqRT-PCRWestern blot 22357618
MIRT006293 hsa-miR-212-3p Luciferase reporter assayqRT-PCRWestern blot 22357618
MIRT006293 hsa-miR-212-3p Luciferase reporter assayqRT-PCRWestern blot 22357618
MIRT006293 hsa-miR-212-3p Luciferase reporter assayqRT-PCRWestern blot 22357618
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
108
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IMP 16229683
GO:0001658 Process Branching involved in ureteric bud morphogenesis IEA
GO:0001701 Process In utero embryonic development IEA
GO:0001709 Process Cell fate determination IEA
GO:0001841 Process Neural tube formation IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601309 9585 ENSG00000185920
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q13635
Protein name Protein patched homolog 1 (PTC) (PTC1)
Protein function Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal. Seems to have a tumor suppressor function, as inactivation of
PDB 6DMB , 6DMO , 6DMY , 6E1H , 6N7G , 6N7H , 6N7K , 6OEU , 6OEV , 6RMG , 6RTW , 6RTX , 6RTY , 6RVC , 6RVD
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF02460 Patched 358 875 Patched family Family
PF02460 Patched 966 1180 Patched family Family
Tissue specificity TISSUE SPECIFICITY: In the adult, expressed in brain, lung, liver, heart, placenta, skeletal muscle, pancreas and kidney. Expressed in tumor cells but not in normal skin.
Sequence
MASAGNAAEPQDRGGGGSGCIGAPGRPAGGGRRRRTGGLRRAAAPDRDYLHRPSYCDAAF
ALEQISKGKATGRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLKAAN
LETNVEELWVEVGGRVSRELNYTRQKIGEEAMFNPQLMIQTPKEEGANVLTTEALLQHLD
SALQASRVHVYMYNRQWKLEHLCYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAK
LQSGTAYLLGKPPLRWTNFDPLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPA
DPDCPATAPNKNSTKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHAL
QTMFQLMTPKQMYEHFKGYEYVSHINWNEDKAAAILEAWQRTYVEVVHQSVAQNSTQKVL
SFTTTTLDDILKSFSDVSVIRVASGYLLMLAYACLTMLRWDCSKSQGAVGLAGVLLVALS
VAAGLGLCSLIGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGEC
LKRTGASVALTSISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDL
YRREDRRLDIFCCFTSPCVSRVIQVEPQAYTDTHDNTRYSPPPPYSSHSFAHETQITMQS
TVQLRTEYDPHTHVYYTTAEPRSEISVQPVTVTQDTLSCQSPESTSSTRDLLSQFSDSSL
HCLEPPCTKWTLSSFAEKHYAPFLLKPKAKVVVIFLFLGLLGVSLYGTTRVRDGLDLTDI
VPRETREYDFIAAQFKYFSFYNMYIVTQKADYPNIQHLLYDLHRSFSNVKYVMLEENKQL
PKMWLHYFRDWLQGLQDAFDSDWETGKIMPNNYKN
GSDDGVLAYKLLVQTGSRDKPIDIS
QLTKQRLVDADGIINPSAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETR
LRIPAAEPIEYAQFPFYLNGLRDTSDFVEAIEKVRTICSNYTSLGLSSYPNGYPFLFWEQ
YIGLRHWLLLFISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSA
VPVVILIASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDGAVSTLLGVLML
AGSEFDFIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGP
YPEVSPANGLNRLPTPSPEP
PPSVVRFAMPPGHTHSGSDSSDSEYSSQTTVSGLSEELRHYEAQQGAGGPAHQVIVEATE
NPVFAHSTVVHPESRHHPPSNPRQQPHLDSGSLPPGRQGQQPRRDPPREGLWPPPYRPRR
DAFEISTEGHSGPSNRARWGPRGARSHNPRNPASTAMGSSVPGYCQPITTVTASASVTVA
VHPPPVPGPGRNPRGGLCPGYPETDHGLFEDPHVPFHVRCERRDSKVEVIELQDVECEER
PRGSSSN
Sequence length 1447
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  cAMP signaling pathway
Hedgehog signaling pathway
Axon guidance
Pathways in cancer
Proteoglycans in cancer
Basal cell carcinoma
  Hedgehog 'off' state
Ligand-receptor interactions
Hedgehog 'on' state
Activation of SMO
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
8461
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Anophthalmia-microphthalmia syndrome Likely pathogenic rs869025270 RCV000207370
Basal cell carcinoma, somatic Pathogenic rs587776689 RCV000008703
Basal cell carcinoma, susceptibility to, 1 Likely pathogenic; Pathogenic rs151216961, rs1060502277, rs766313615, rs1060502286, rs1564055259, rs376353501, rs1840094606 RCV004574630
RCV005049559
RCV003389327
RCV005398623
RCV001196669
RCV005394664
RCV001197759
Basal cell nevus syndrome 1 Likely pathogenic; Pathogenic rs1060502268, rs267606984, rs2117956624, rs2118419579, rs2118365442, rs2118041703, rs2136689212, rs2118336503, rs878853849, rs1554695110, rs1298115628, rs2538234385, rs1268572514, rs2538041118, rs2538244596
View all (11 more)
RCV005866985
RCV004576922
RCV004576889
RCV004576890
RCV004576891
RCV004576892
RCV004576893
RCV004576894
RCV004808535
RCV004576942
RCV005249513
RCV005254858
RCV005871293
RCV003985964
RCV003987294
RCV004577311
RCV005049559
RCV005398623
RCV004594064
RCV004576912
RCV005624168
RCV004796321
RCV005603677
RCV004576978
RCV005394664
RCV004801932
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abnormal cardiovascular system morphology Conflicting classifications of pathogenicity rs371346118 RCV002245603
Acute myeloid leukemia Conflicting classifications of pathogenicity; Likely benign rs374691153, rs2277183 RCV000761130
RCV005905451
Autism spectrum disorder Conflicting classifications of pathogenicity rs1398517498 RCV003126251
Basal cell carcinoma Uncertain significance rs1564006281 RCV000678481
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Associate 17461467, 20609239
Adenomatous Polyposis Coli Associate 39519399, 9916927
Adrenal Gland Neoplasms Associate 9703361
Adrenocortical Carcinoma Associate 25078331
Allanson Pantzar McLeod syndrome Associate 30181650
Ameloblastoma Associate 22952776, 27386018, 33144428
Aneurysm Inhibit 24768363
Asthma Associate 25997986
Astrocytoma Associate 20223881, 21059263
Ataxia Telangiectasia Associate 19500021