Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
57216
Gene name Gene Name - the full gene name approved by the HGNC.
VANGL planar cell polarity protein 2
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
VANGL2
Synonyms (NCBI Gene) Gene synonyms aliases
LPP1, LTAP, STB1, STBM, STBM1
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q23.2
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a membrane protein involved in the regulation of planar cell polarity, especially in the stereociliary bundles of the cochlea. The encoded protein transmits directional signals to individual cells or groups of cells in
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs267607167 C>G,T Risk-factor Missense variant, coding sequence variant, genic downstream transcript variant
rs267607168 T>C Risk-factor Missense variant, coding sequence variant, genic downstream transcript variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT017700 hsa-miR-335-5p Microarray 18185580
MIRT029478 hsa-miR-26b-5p Sequencing 20371350
MIRT049626 hsa-miR-92a-3p CLASH 23622248
MIRT710128 hsa-miR-6752-3p HITS-CLIP 19536157
MIRT710127 hsa-miR-6747-3p HITS-CLIP 19536157
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001736 Process Establishment of planar polarity IBA 21873635
GO:0001736 Process Establishment of planar polarity ISS
GO:0001843 Process Neural tube closure ISS
GO:0001947 Process Heart looping ISS
GO:0005515 Function Protein binding IPI 22610794, 28330616, 30126976
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
600533 15511 ENSG00000162738
Protein
UniProt ID Q9ULK5
Protein name Vang-like protein 2 (Loop-tail protein 1 homolog) (Strabismus 1) (Van Gogh-like protein 2)
Protein function Involved in the control of early morphogenesis and patterning of both axial midline structures and the development of neural plate. Plays a role in the regulation of planar cell polarity, particularly in the orientation of stereociliary bundles
PDB 6XA6 , 6XA7 , 6XA8 , 7R2M , 7R2T , 9JK7 , 9JKA
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06638 Strabismus 20 521 Strabismus protein Family
Sequence
Sequence length 521
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  
  Wnt signaling pathway  
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Anencephaly Anencephaly, Iniencephaly, Exencephaly rs773607884 20558380, 2373757
Hydrocephalus Hydrocephalus rs387907320, rs369384363, rs387907321, rs372127610, rs770273135, rs797045095, rs797045707, rs769795916, rs781251438, rs922703465, rs376078512, rs1567043467, rs1587149916, rs1586841546
Neural tube defect Neural Tube Defects rs121434297, rs137853061, rs137853062, rs768434408, rs777661576, rs747846362, rs200137991, rs780014899, rs574132670, rs786204013, rs147257424, rs763539350, rs776483190, rs781461462, rs1114167354
View all (26 more)
2373757
Unknown
Disease term Disease name Evidence References Source
Neural Tube Defect neural tube defects, susceptibility to GenCC
Multiple Sclerosis Multiple Sclerosis GWAS
Rheumatoid arthritis Rheumatoid arthritis GWAS
Systemic lupus erythematosus Systemic lupus erythematosus GWAS
Associations from Text Mining
Disease Name Relationship Type References
Bohring syndrome Associate 37053013, 39614348
Capillary Malformation Arteriovenous Malformation Associate 20738329
Colorectal Neoplasms Associate 23579212
Glioma Stimulate 28481871
Lung Neoplasms Associate 32107851
Nasal Polyps Associate 38232516
Neoplasms Associate 23579212
Neural Tube Defects Associate 20738329, 33684218
Osteoarthritis Inhibit 29806631
Pneumonia Pneumocystis Associate 29573971