Gene Gene information from NCBI Gene database.
Entrez ID 56983
Gene name Protein O-glucosyltransferase 1
Gene symbol POGLUT1
Synonyms (NCBI Gene)
C3orf9CLP46KDELCL1KTELC1LGMD2ZLGMDR21MDS010MDSRPRumihCLP46
Chromosome 3
Chromosome location 3q13.33
Summary This gene encodes a protein with both O-glucosyltransferase and O-xylosyltransferase activity which localizes to the lumen of the endoplasmic reticulum. This protein has a carboxy-terminal KTEL motif which is predicted to function as an endoplasmic reticu
SNPs SNP information provided by dbSNP.
7
SNP ID Visualize variation Clinical significance Consequence
rs550944082 T>C,G Pathogenic Synonymous variant, non coding transcript variant, missense variant, coding sequence variant
rs587777293 G>A,T Pathogenic 5 prime UTR variant, missense variant, upstream transcript variant, coding sequence variant, non coding transcript variant, stop gained, genic upstream transcript variant
rs587777294 C>T Pathogenic Stop gained, coding sequence variant, non coding transcript variant
rs587777295 A>C Pathogenic Splice acceptor variant
rs587777296 ->C Pathogenic Coding sequence variant, non coding transcript variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
330
miRTarBase ID miRNA Experiments Reference
MIRT022776 hsa-miR-124-3p Microarray 18668037
MIRT1246941 hsa-miR-1229 CLIP-seq
MIRT1246942 hsa-miR-1257 CLIP-seq
MIRT1246943 hsa-miR-1267 CLIP-seq
MIRT1246944 hsa-miR-129-5p CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
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GO ID Ontology Definition Evidence Reference
GO:0001756 Process Somitogenesis IEA
GO:0005783 Component Endoplasmic reticulum IDA
GO:0005783 Component Endoplasmic reticulum IEA
GO:0005788 Component Endoplasmic reticulum lumen IDA 16524674, 27807076
GO:0005788 Component Endoplasmic reticulum lumen IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
615618 22954 ENSG00000163389
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8NBL1
Protein name Protein O-glucosyltransferase 1 (EC 2.4.1.376) (CAP10-like 46 kDa protein) (hCLP46) (KTEL motif-containing protein 1) (Myelodysplastic syndromes relative protein) (O-glucosyltransferase Rumi homolog) (hRumi) (Protein O-xylosyltransferase POGLUT1) (EC 2.4.
Protein function Dual specificity glycosyltransferase that catalyzes the transfer of glucose and xylose from UDP-glucose and UDP-xylose, respectively, to a serine residue found in the consensus sequence of C-X-S-X-P-C (PubMed:21081508, PubMed:21490058, PubMed:21
PDB 5L0R , 5L0S , 5L0T , 5L0U , 5L0V , 5UB5
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05686 Glyco_transf_90 49 391 Glycosyl transferase family 90 Family
Tissue specificity TISSUE SPECIFICITY: Expressed in most adult tissues at different intensities. Abundantly expressed in liver. Expressed also in brain, heart, skeletal muscle, spleen, kidney, placenta, lung and peripheral blood leukocyte. Not detectable in colon, thymus an
Sequence
Sequence length 392
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG 
  Other types of O-glycan biosynthesis  
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
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Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Autosomal recessive limb-girdle muscular dystrophy type 2R1 Likely pathogenic; Pathogenic rs762277732, rs550944082, rs1560034617 RCV002287545
RCV000412593
RCV002290007
Dowling-Degos disease 4 Likely pathogenic; Pathogenic rs587777293, rs587777294, rs587777295, rs587777296 RCV000114419
RCV000114420
RCV000114421
RCV000114422
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Gastric cancer Conflicting classifications of pathogenicity rs200853598 RCV005926444
POGLUT1-related disorder Conflicting classifications of pathogenicity; Benign; Uncertain significance; Likely benign rs747897279, rs3732420, rs1997341, rs147559897, rs749876526, rs114296047 RCV003394021
RCV003980589
RCV003980780
RCV003913801
RCV003418840
RCV003936173
Sarcoma Conflicting classifications of pathogenicity rs200853598 RCV005926443
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Anemia Refractory with Excess of Blasts Associate 19822096
Arthritis Rheumatoid Stimulate 19822096
Dowling Degos Disease Associate 24387993, 25157627
Endometrial Neoplasms Associate 25528443
Hepatitis B Associate 39237981
Leukemia Myeloid Acute Stimulate 23692084
Leukemia Myelomonocytic Juvenile Inhibit 19822096
Leukemia T Cell Stimulate 23692084
Limb girdle muscular dystrophy autosomal recessive Associate 27807076
Liver Cirrhosis Biliary Associate 30643196