Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
56983
Gene name Gene Name - the full gene name approved by the HGNC.
Protein O-glucosyltransferase 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
POGLUT1
Synonyms (NCBI Gene) Gene synonyms aliases
C3orf9, CLP46, KDELCL1, KTELC1, LGMD2Z, LGMDR21, MDS010, MDSRP, Rumi, hCLP46
Chromosome Chromosome number
3
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
3q13.33
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a protein with both O-glucosyltransferase and O-xylosyltransferase activity which localizes to the lumen of the endoplasmic reticulum. This protein has a carboxy-terminal KTEL motif which is predicted to function as an endoplasmic reticu
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs550944082 T>C,G Pathogenic Synonymous variant, non coding transcript variant, missense variant, coding sequence variant
rs587777293 G>A,T Pathogenic 5 prime UTR variant, missense variant, upstream transcript variant, coding sequence variant, non coding transcript variant, stop gained, genic upstream transcript variant
rs587777294 C>T Pathogenic Stop gained, coding sequence variant, non coding transcript variant
rs587777295 A>C Pathogenic Splice acceptor variant
rs587777296 ->C Pathogenic Coding sequence variant, non coding transcript variant, frameshift variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT022776 hsa-miR-124-3p Microarray 18668037
MIRT1246941 hsa-miR-1229 CLIP-seq
MIRT1246942 hsa-miR-1257 CLIP-seq
MIRT1246943 hsa-miR-1267 CLIP-seq
MIRT1246944 hsa-miR-129-5p CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001756 Process Somitogenesis IEA
GO:0005783 Component Endoplasmic reticulum IDA
GO:0005783 Component Endoplasmic reticulum IEA
GO:0005788 Component Endoplasmic reticulum lumen IDA 16524674, 27807076
GO:0005788 Component Endoplasmic reticulum lumen IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
615618 22954 ENSG00000163389
Protein
UniProt ID Q8NBL1
Protein name Protein O-glucosyltransferase 1 (EC 2.4.1.376) (CAP10-like 46 kDa protein) (hCLP46) (KTEL motif-containing protein 1) (Myelodysplastic syndromes relative protein) (O-glucosyltransferase Rumi homolog) (hRumi) (Protein O-xylosyltransferase POGLUT1) (EC 2.4.
Protein function Dual specificity glycosyltransferase that catalyzes the transfer of glucose and xylose from UDP-glucose and UDP-xylose, respectively, to a serine residue found in the consensus sequence of C-X-S-X-P-C (PubMed:21081508, PubMed:21490058, PubMed:21
PDB 5L0R , 5L0S , 5L0T , 5L0U , 5L0V , 5UB5
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05686 Glyco_transf_90 49 391 Glycosyl transferase family 90 Family
Tissue specificity TISSUE SPECIFICITY: Expressed in most adult tissues at different intensities. Abundantly expressed in liver. Expressed also in brain, heart, skeletal muscle, spleen, kidney, placenta, lung and peripheral blood leukocyte. Not detectable in colon, thymus an
Sequence
Sequence length 392
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  
  Other types of O-glycan biosynthesis  
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Dowling-Degos Disease dowling-degos disease 4 rs587777293, rs587777294, rs587777295, rs587777296 N/A
Limb-girdle muscular dystrophy Autosomal recessive limb-girdle muscular dystrophy type 2R1 rs550944082, rs1560034617 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Biliary Cholangitis Primary biliary cholangitis N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Anemia Refractory with Excess of Blasts Associate 19822096
Arthritis Rheumatoid Stimulate 19822096
Dowling Degos Disease Associate 24387993, 25157627
Endometrial Neoplasms Associate 25528443
Hepatitis B Associate 39237981
Leukemia Myeloid Acute Stimulate 23692084
Leukemia Myelomonocytic Juvenile Inhibit 19822096
Leukemia T Cell Stimulate 23692084
Limb girdle muscular dystrophy autosomal recessive Associate 27807076
Liver Cirrhosis Biliary Associate 30643196