Gene Gene information from NCBI Gene database.
Entrez ID 5663
Gene name Presenilin 1
Gene symbol PSEN1
Synonyms (NCBI Gene)
ACNINV3AD3CMD1UFADPS-1PS1PSNL1S182
Chromosome 14
Chromosome location 14q24.2
Summary Alzheimer`s disease (AD) patients with an inherited form of the disease carry mutations in the presenilin proteins (PSEN1; PSEN2) or in the amyloid precursor protein (APP). These disease-linked mutations result in increased production of the longer form o
SNPs SNP information provided by dbSNP.
68
SNP ID Visualize variation Clinical significance Consequence
rs661 G>A,T Pathogenic, not-provided Coding sequence variant, missense variant
rs63749824 C>G,T Pathogenic Coding sequence variant, missense variant
rs63749836 G>A Likely-pathogenic Coding sequence variant, missense variant
rs63749885 C>T Not-provided, pathogenic Coding sequence variant, missense variant
rs63749891 G>C,T Not-provided, pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
383
miRTarBase ID miRNA Experiments Reference
MIRT005025 hsa-miR-562 Luciferase reporter assay 19789318
MIRT020666 hsa-miR-155-5p Proteomics 18668040
MIRT025010 hsa-miR-183-5p Sequencing 20371350
MIRT572988 hsa-miR-5000-5p PAR-CLIP 20371350
MIRT572987 hsa-miR-935 PAR-CLIP 20371350
Transcription factors Transcription factors information provided by TRRUST V2 database.
3
Transcription factor Regulation Reference
CREB1 Activation 11116137
ELK1 Activation 12750007
SP1 Unknown 10446206
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
218
GO ID Ontology Definition Evidence Reference
GO:0000045 Process Autophagosome assembly IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IEA
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IMP 10508860
GO:0000139 Component Golgi membrane IEA
GO:0000776 Component Kinetochore IDA 9298903
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
104311 9508 ENSG00000080815
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P49768
Protein name Presenilin-1 (PS-1) (EC 3.4.23.-) (Protein S182) [Cleaved into: Presenilin-1 NTF subunit; Presenilin-1 CTF subunit; Presenilin-1 CTF12 (PS1-CTF12)]
Protein function Catalytic subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors and APP (amyloid-beta precursor protein) (PubMed:10206644, PubMed:10545183,
PDB 2KR6 , 4UIS , 5A63 , 5FN2 , 5FN3 , 5FN4 , 5FN5 , 6IDF , 6IYC , 6LQG , 6LR4 , 7C9I , 7D8X , 7Y5T , 8IM7 , 8K8E , 8KCO , 8KCP , 8KCS , 8KCT , 8KCU , 8OQY , 8OQZ , 8X52 , 8X53 , 8X54
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01080 Presenilin 76 457 Presenilin Family
Tissue specificity TISSUE SPECIFICITY: Detected in azurophile granules in neutrophils and in platelet cytoplasmic granules (at protein level) (PubMed:11987239). Expressed in a wide range of tissues including various regions of the brain, liver, spleen and lymph nodes (PubMe
Sequence
Sequence length 467
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Wnt signaling pathway
Notch signaling pathway
Neurotrophin signaling pathway
Alzheimer disease
Pathways of neurodegeneration - multiple diseases
Human papillomavirus infection
  Nuclear signaling by ERBB4
Regulated proteolysis of p75NTR
NRIF signals cell death from the nucleus
Constitutive Signaling by NOTCH1 PEST Domain Mutants
Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants
EPH-ephrin mediated repulsion of cells
Neutrophil degranulation
NOTCH3 Activation and Transmission of Signal to the Nucleus
Noncanonical activation of NOTCH3
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
1345
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abnormality of the nervous system Pathogenic rs63749891 RCV001814004
Acne inversa, familial, 3 Likely pathogenic; Pathogenic rs63750450, rs63750730, rs63750550, rs63749805, rs63750353, rs63751278, rs63750004, rs63750391, rs63751210, rs63750963, rs63749806, rs63750311, rs63750053, rs63749836, rs63751420
View all (44 more)
RCV000640610
RCV002514493
RCV002514494
RCV005222747
RCV001854472
RCV000824341
RCV001071503
RCV001854473
RCV002513897
RCV002514495
RCV002513898
RCV001857411
RCV000640604
RCV000763347
RCV003764779
RCV005222748
RCV001387954
RCV002514496
RCV005222749
RCV002513899
RCV002513900
RCV005225421
RCV003764803
RCV002014803
RCV002037964
RCV001949489
RCV001980594
RCV003062642
RCV003062643
RCV003112298
RCV002601742
RCV002824042
RCV002876347
RCV003783616
RCV003783617
RCV001248367
RCV000534810
RCV000542870
RCV000640605
RCV003764610
RCV000701892
RCV002513125
RCV000763348
RCV000640609
RCV001228362
RCV001204170
RCV002513126
RCV000640606
RCV000529477
RCV001377214
RCV002514122
RCV000818883
RCV000022446
RCV000689465
RCV000703026
RCV001055042
RCV002533770
RCV000816670
RCV000821428
RCV005225170
RCV003769343
RCV001049005
RCV001230382
RCV005225347
RCV001378264
Alzheimer disease Likely pathogenic; Pathogenic rs1566638673, rs63750009, rs63750219, rs1566656702, rs1566657804 RCV000736263
RCV000736262
RCV000736261
RCV000736267
RCV000736264
Alzheimer disease 3 Pathogenic; Likely pathogenic rs2140037322, rs63751475, rs63750450, rs63750730, rs63750550, rs63749805, rs63750353, rs63751278, rs63751106, rs63750004, rs63750391, rs63751210, rs63750963, rs63749806, rs63750311
View all (66 more)
RCV001647233
RCV002271335
RCV000640610
RCV002514493
RCV002514494
RCV002272062
RCV001854472
RCV000824341
RCV001290408
RCV001071503
RCV001854473
RCV002513897
RCV002514495
RCV002513898
RCV001857411
RCV000640604
RCV000763347
RCV001808318
RCV003764779
RCV004783741
RCV001387954
RCV001261442
RCV005222749
RCV002224959
RCV005252745
RCV000198517
RCV002513899
RCV002513900
RCV001810076
RCV000625969
RCV002014803
RCV002037964
RCV001949489
RCV001980594
RCV003062642
RCV003062643
RCV003112298
RCV002601742
RCV002824042
RCV002876347
RCV003159278
RCV003320398
RCV003783616
RCV003783617
RCV000019751
RCV000534810
RCV000542870
RCV000019754
RCV000640605
RCV000019756
RCV000019757
RCV000019758
RCV000701892
RCV000019760
RCV000019762
RCV000019765
RCV000763348
RCV000019767
RCV000019768
RCV000019771
RCV000019772
RCV000019773
RCV003388569
RCV000020084
RCV000019776
RCV000019777
RCV000984888
RCV000020085
RCV000019780
RCV000019782
RCV005409602
RCV000019785
RCV000529477
RCV000019788
RCV001377214
RCV000020082
RCV000020086
RCV000689465
RCV000703026
RCV001055042
RCV002470967
RCV000782176
RCV000790841
RCV000816670
RCV000821428
RCV005225170
RCV000853575
RCV000995615
RCV001049005
RCV001230382
RCV001281064
RCV001378264
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cervical cancer Likely benign rs77983620 RCV005915351
Colon adenocarcinoma Conflicting classifications of pathogenicity rs149562759 RCV005913768
Dilated Cardiomyopathy, Dominant Uncertain significance; Conflicting classifications of pathogenicity; Benign; Likely benign rs886050670, rs563773430, rs886050661, rs200531676, rs574671310, rs886050680, rs886050662, rs1800839 RCV000281404
RCV000271117
RCV000333397
RCV000289019
RCV000377452
RCV000402268
RCV000282773
RCV000408289
Familial cancer of breast Benign rs199723282 RCV005889679
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
AA amyloidosis Associate 12706835, 18317569, 30786875, 31391004, 32033164, 32894632, 34463747, 34759019, 37895139, 9250173
Abnormalities Drug Induced Associate 23579331, 26923015, 31416668
Adenocarcinoma Associate 34818353
Adenocarcinoma of Lung Associate 35710585
Adrenal Cortex Diseases Associate 23134660
Affective Disorders Psychotic Associate 33264156
Agnosia Associate 30200536, 32103039, 33263761
Alcohol Amnestic Disorder Associate 27777022
Alzheimer Disease Associate 10101252, 10205007, 10329743, 10349860, 10366599, 10393925, 10404513, 10409650, 10441572, 10551805, 10582585, 10582597, 10595683, 10620705, 10644793
View all (400 more)
Alzheimer Disease Familial 3 with Spastic Paraparesis and Apraxia Associate 30138848