Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
55869
Gene name Gene Name - the full gene name approved by the HGNC.
Histone deacetylase 8
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
HDAC8
Synonyms (NCBI Gene) Gene synonyms aliases
CDA07, CDLS5, HD8, HDACL1, KDAC8, MRXS6, RPD3, WTS
Disease Acronyms (UniProt) Disease acronyms from UniProt database
CDLS5, WTS
Chromosome Chromosome number
X
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
Xq13.1
Summary Summary of gene provided in NCBI Entrez Gene.
Histones play a critical role in transcriptional regulation, cell cycle progression, and developmental events. Histone acetylation/deacetylation alters chromosome structure and affects transcription factor access to DNA. The protein encoded by this gene b
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs146015223 G>A,T Benign, pathogenic 5 prime UTR variant, stop gained, synonymous variant, intron variant, non coding transcript variant, genic downstream transcript variant, coding sequence variant
rs397515415 G>A,T Pathogenic Coding sequence variant, 5 prime UTR variant, synonymous variant, stop gained, non coding transcript variant, intron variant, genic downstream transcript variant
rs397515416 T>C Pathogenic Missense variant, coding sequence variant, 5 prime UTR variant, non coding transcript variant, intron variant, genic downstream transcript variant
rs397515417 G>A Pathogenic Non coding transcript variant, genic downstream transcript variant, missense variant, coding sequence variant
rs397515418 T>C Pathogenic Non coding transcript variant, genic downstream transcript variant, missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT003761 hsa-miR-449a Western blot 19252524
MIRT440521 hsa-miR-218-5p HITS-CLIP 23212916
MIRT440521 hsa-miR-218-5p HITS-CLIP 23212916
MIRT731866 hsa-miR-216b-5p Flow, Luciferase reporter assay, qRT-PCR, Western blot 26408293
MIRT731866 hsa-miR-216b-5p Flow, Luciferase reporter assay, qRT-PCR, Western blot 26408293
Transcription factors
Transcription factor Regulation Reference
SOX4 Activation 23482931
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000118 Component Histone deacetylase complex IBA 21873635
GO:0000118 Component Histone deacetylase complex TAS 12711221
GO:0000122 Process Negative regulation of transcription by RNA polymerase II TAS 10748112
GO:0000228 Component Nuclear chromosome TAS 10748112
GO:0004407 Function Histone deacetylase activity IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
300269 13315 ENSG00000147099
Protein
UniProt ID Q9BY41
Protein name Histone deacetylase 8 (HD8) (EC 3.5.1.98) (Protein deacetylase HDAC8) (EC 3.5.1.-) (Protein decrotonylase HDAC8) (EC 3.5.1.-)
Protein function Histone deacetylase that catalyzes the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4) (PubMed:10748112, PubMed:10922473, PubMed:10926844, PubMed:14701748, PubMed:28497810). Histone deacetylatio
PDB 1T64 , 1T67 , 1T69 , 1VKG , 1W22 , 2V5W , 2V5X , 3EW8 , 3EWF , 3EZP , 3EZT , 3F06 , 3F07 , 3F0R , 3MZ3 , 3MZ4 , 3MZ6 , 3MZ7 , 3RQD , 3SFF , 3SFH , 4QA0 , 4QA1 , 4QA2 , 4QA3 , 4QA4 , 4QA5 , 4QA6 , 4QA7 , 4RN0 , 4RN1 , 4RN2 , 5BWZ , 5D1B , 5D1C , 5D1D , 5DC5 , 5DC6 , 5DC7 , 5DC8 , 5FCW , 5THS , 5THT , 5THU , 5THV , 5VI6 , 6HSK , 6ODA , 6ODB , 6ODC , 7JVU
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00850 Hist_deacetyl 31 322 Histone deacetylase domain Domain
Tissue specificity TISSUE SPECIFICITY: Weakly expressed in most tissues. Expressed at higher level in heart, brain, kidney and pancreas and also in liver, lung, placenta, prostate and kidney. {ECO:0000269|PubMed:10926844, ECO:0000269|PubMed:14701748, ECO:0000269|PubMed:1577
Sequence
Sequence length 377
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Cell cycle
Neutrophil extracellular trap formation
Alcoholism
Viral carcinogenesis
  Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion
Constitutive Signaling by NOTCH1 PEST Domain Mutants
Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants
HDACs deacetylate histones
Notch-HLH transcription pathway
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Atrial septal defect Atrial Septal Defects rs137852951, rs137852953, rs137852955, rs267607106, rs104893900, rs104893901, rs104893903, rs606231358, rs606231359, rs137852683, rs606231360, rs104893907, rs104894073, rs1585703301, rs104894074
View all (25 more)
Atrioventricular septal defect Atrioventricular Septal Defect rs137852683, rs137852686, rs104894073, rs1598737972, rs1057518960, rs774018674, rs1575650682, rs1598737976, rs1188358849, rs2033057699
Attention deficit hyperactivity disorder Attention deficit hyperactivity disorder rs786205019
Autism Autistic Disorder rs121964908, rs62643608, rs181327458, rs797046134, rs869312704, rs1555013332, rs876657679, rs1057518999, rs1057518658, rs771827120, rs1555187899, rs773080572, rs753871454, rs1684130791, rs1684180699
View all (8 more)
Unknown
Disease term Disease name Evidence References Source
Ptosis Blepharoptosis, Ptosis ClinVar
Specific learning disorder Specific learning disability ClinVar
Cornelia De Lange Syndrome Cornelia de Lange syndrome GenCC
Wilson-Turner Syndrome Wilson-Turner syndrome GenCC
Associations from Text Mining
Disease Name Relationship Type References
Acne Vulgaris Associate 30737272
Aortic Aneurysm Abdominal Associate 25993293
Autism Spectrum Disorder Associate 34069769, 35358829
Breast Neoplasms Associate 29333926, 31817161, 31970414, 32429642
Calcinosis Cutis Associate 25836739
Carcinogenesis Associate 16809764, 30292946, 35345359
Carcinoma Pancreatic Ductal Associate 29374219
Carcinoma Renal Cell Associate 34308568
Cardiomegaly Associate 33122805
Colorectal Neoplasms Associate 25321483, 36575468