Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
5580
Gene name Gene Name - the full gene name approved by the HGNC.
Protein kinase C delta
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PRKCD
Synonyms (NCBI Gene) Gene synonyms aliases
ALPS3, CVID9, MAY1, PKCD, nPKC-delta
Disease Acronyms (UniProt) Disease acronyms from UniProt database
ALPS3
Chromosome Chromosome number
3
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
3p21.1
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a member of the protein kinase C family of serine- and threonine-specific protein kinases. The encoded protein is activated by diacylglycerol and is both a tumor suppressor and a positive regulator of cell cycle progres
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs33911937 A>G Conflicting-interpretations-of-pathogenicity Intron variant, missense variant, coding sequence variant
rs398122958 G>A Pathogenic Splice donor variant
rs606231296 G>A Pathogenic Missense variant, coding sequence variant, non coding transcript variant
rs606231297 C>T Pathogenic Missense variant, coding sequence variant, non coding transcript variant
rs1295207359 A>G Likely-pathogenic Splice acceptor variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT041814 hsa-miR-484 CLASH 23622248
MIRT039609 hsa-miR-615-3p CLASH 23622248
MIRT039609 hsa-miR-615-3p CLASH 23622248
MIRT053097 hsa-miR-26a-5p Luciferase reporter assay, Western blot 23525216
MIRT163342 hsa-miR-181a-5p Luciferase reporter assay 24183997
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0002223 Process Stimulatory C-type lectin receptor signaling pathway TAS
GO:0004672 Function Protein kinase activity IDA 24008408
GO:0004674 Function Protein serine/threonine kinase activity EXP 12391145, 18285462
GO:0004674 Function Protein serine/threonine kinase activity IBA 21873635
GO:0004674 Function Protein serine/threonine kinase activity IDA 10770950, 18285462, 19059439
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
176977 9399 ENSG00000163932
Protein
UniProt ID Q05655
Protein name Protein kinase C delta type (EC 2.7.11.13) (Tyrosine-protein kinase PRKCD) (EC 2.7.10.2) (nPKC-delta) [Cleaved into: Protein kinase C delta type regulatory subunit; Protein kinase C delta type catalytic subunit (Sphingosine-dependent protein kinase-1) (SD
Protein function Calcium-independent, phospholipid- and diacylglycerol (DAG)-dependent serine/threonine-protein kinase that plays contrasting roles in cell death and cell survival by functioning as a pro-apoptotic protein during DNA damage-induced apoptosis, but
PDB 1YRK , 2YUU
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00130 C1_1 159 211 Phorbol esters/diacylglycerol binding domain (C1 domain) Domain
PF00130 C1_1 231 283 Phorbol esters/diacylglycerol binding domain (C1 domain) Domain
PF00069 Pkinase 349 603 Protein kinase domain Domain
PF00433 Pkinase_C 624 665 Protein kinase C terminal domain Family
Sequence
MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFD
AHIYEGRVIQIVLMRAAEEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQAKVLMSVQY
FLEDVDCKQSMRSEDEAKFPTMNRRGAIKQAKIHYIKNHEFIATFFGQPTFCSVCKDFVW
GLNKQGYKCRQCNAAIHKKCIDKIIGRCTGT
AANSRDTIFQKERFNIDMPHRFKVHNYMS
PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCGIN
QKLLAEALNQVTQRASR
RSDSASSEPVGIYQGFEKKTGVAGEDMQDNSGTYGKIWEGSSKCNINNFIFHKVLGKGSF
GKVLLGELKGRGEYFAIKALKKDVVLIDDDVECTMVEKRVLTLAAENPFLTHLICTFQTK
DHLFFVMEFLNGGDLMYHIQDKGRFELYRATFYAAEIMCGLQFLHSKGIIYRDLKLDNVL
LDRDGHIKIADFGMCKENIFGESRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYE
MLIGQSPFHGDDEDELFESIRVDTPHYPRWITKESKDILEKLFEREPTKRLGVTGNIKIH
PFF
KTINWTLLEKRRLEPPFRPKVKSPRDYSNFDQEFLNEKARLSYSDKNLIDSMDQSAF
AGFSF
VNPKFEHLLED
Sequence length 676
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Chemokine signaling pathway
Autophagy - animal
Vascular smooth muscle contraction
NOD-like receptor signaling pathway
C-type lectin receptor signaling pathway
Fc gamma R-mediated phagocytosis
Neurotrophin signaling pathway
Inflammatory mediator regulation of TRP channels
GnRH signaling pathway
Estrogen signaling pathway
Type II diabetes mellitus
Insulin resistance
AGE-RAGE signaling pathway in diabetic complications
Prion disease
Shigellosis
Chemical carcinogenesis - reactive oxygen species
Diabetic cardiomyopathy
  Apoptotic cleavage of cellular proteins
Calmodulin induced events
Effects of PIP2 hydrolysis
SHC1 events in ERBB2 signaling
DAG and IP3 signaling
Role of phospholipids in phagocytosis
HuR (ELAVL1) binds and stabilizes mRNA
VEGFR2 mediated cell proliferation
CLEC7A (Dectin-1) signaling
RHO GTPases Activate NADPH Oxidases
Neutrophil degranulation
Interferon gamma signaling
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Anemia Anemia, Hemolytic rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966
View all (89 more)
Arthritis Arthritis rs1594890601, rs1594882933, rs184370809, rs776489319, rs1594883470
Autoimmune lymphoproliferative disorder Autoimmune Lymphoproliferative Syndrome, AUTOIMMUNE LYMPHOPROLIFERATIVE SYNDROME, TYPE III, Autoimmune lymphoproliferative syndrome rs17860424, rs112445441, rs121913529, rs121434596, rs80358236, rs606231361, rs606231362, rs121913076, rs606231363, rs121913077, rs28929498, rs121913080, rs267607122, rs606231364, rs606231365
View all (31 more)
23430113
Bronchiectasis Bronchiectasis rs121908758, rs121908811, rs76649725, rs267606722, rs121909008, rs387906360, rs387906361, rs80034486, rs74767530, rs121908776, rs121909012, rs77646904, rs121908754, rs121909015, rs121909016
View all (214 more)
Unknown
Disease term Disease name Evidence References Source
Otitis media Chronic otitis media ClinVar
Autoimmune Lymphoproliferative Disorder autoimmune lymphoproliferative syndrome, type III caused by mutation in PRKCD, autoimmune lymphoproliferative syndrome GenCC
Common Variable Immunodeficiency common variable immunodeficiency GenCC
Associations from Text Mining
Disease Name Relationship Type References
Adenocarcinoma Associate 17608772
Adenocarcinoma of Lung Associate 16055435, 36254009, 38186574
Adenoma Associate 25371776
Alzheimer Disease Associate 18336728, 37418137
Aortic Dissection Associate 33083483
Arthritis Rheumatoid Associate 27915349
Arthropathy progressive pseudorheumatoid of childhood Associate 17200207
Atherosclerosis Associate 27910925
Autoimmune Diseases Associate 36782298
Bone Diseases Metabolic Associate 25420887