Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
55773
Gene name Gene Name - the full gene name approved by the HGNC.
TBC1 domain family member 23
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
TBC1D23
Synonyms (NCBI Gene) Gene synonyms aliases
NS4ATP1, PCH11
Disease Acronyms (UniProt) Disease acronyms from UniProt database
PCH11
Chromosome Chromosome number
3
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
3q12.1-q12.2
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs1553730885 T>AA Pathogenic Frameshift variant, coding sequence variant
rs1553731603 G>A Pathogenic Splice donor variant
rs1553731605 T>A Pathogenic Splice donor variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT1412767 hsa-miR-3684 CLIP-seq
MIRT1412768 hsa-miR-4503 CLIP-seq
MIRT1412769 hsa-miR-1207-5p CLIP-seq
MIRT1412770 hsa-miR-190 CLIP-seq
MIRT1412771 hsa-miR-190b CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 25416956, 29084197, 32296183
GO:0005794 Component Golgi apparatus IDA
GO:0005802 Component Trans-Golgi network IBA 21873635
GO:0005802 Component Trans-Golgi network IDA 28823706, 29084197, 29426865
GO:0005829 Component Cytosol IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
617687 25622 ENSG00000036054
Protein
UniProt ID Q9NUY8
Protein name TBC1 domain family member 23 (HCV non-structural protein 4A-transactivated protein 1)
Protein function Putative Rab GTPase-activating protein which plays a role in vesicular trafficking (PubMed:28823707). Involved in endosome-to-Golgi trafficking. Acts as a bridging protein by binding simultaneously to golgins, including GOLGA1 and GOLGA4, locate
PDB 6JL7 , 6JM5 , 8JJ9 , 8QQF
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00566 RabGAP-TBC 47 246 Rab-GTPase-TBC domain Family
PF00581 Rhodanese 323 440 Rhodanese-like domain Domain
Tissue specificity TISSUE SPECIFICITY: Isoform 1: Widely expressed, including in fetal adult brain (corpus callosum, pons, cerebellum), spinal cord, heart, skeletal muscle, thymus and bone marrow, and at lower levels in spleen. Hardly detected in liver, kidney, colon and te
Sequence
MAEGEDVPPLPTSSGDGWEKDLEEALEAGGCDLETLRNIIQGRPLPADLRAKVWKIALNV
AGKGDSLASWDGILDLPEQNTIHKDCLQFIDQLSVPEEKAAELLLDIESVITFYCKSRNI
KYSTSLSWIHLLKPLVHLQLPRSDLYNCFYAIMNKYIPRDCSQKGRPFHLFRLLIQYHEP
ELCSYLDTKKITPDSYALNWLGSLFACYCSTEVTQAIWDGYLQQADPFFIYFLMLIILVN
AKEVIL
TQESDSKEEVIKFLENTPSSLNIEDIEDLFSLAQYYCSKTPASFRKDNHHLFGS
TLLGIKDDDADLSQALCLAISVSEILQANQLQGEGVRFFVVDCRPAEQYNAGHLSTAFHL
DSDLMLQNPSEFAQSVKSLLEAQKQSIESGSIAGGEHLCFMGSGREEEDMYMNMVLAHFL
QKNKEYVSIASGGFMALQQH
LADINVDGPENGYGHWIASTSGSRSSINSVDGESPNGSSD
RGMKSLVNKMTVALKTKSVNVREKVISFIENTSTPVDRMSFNLPWPDRSCTERHVSSSDR
VGKPYRGVKPVFSIGDEEEYDTDEIDSSSMSDDDRKEVVNIQTWINKPDVKHHFPCKEVK
ESGHMFPSHLLVTATHMYCLREIVSRKGLAYIQSRQALNSVVKITSKKKHPELITFKYGN
SSASGIEILAIERYLIPNAGDATKAIKQQIMKVLDALES
Sequence length 699
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Congenital ocular coloboma Congenital ocular coloboma (disorder) rs587778875, rs587777249, rs767611891, rs2091986259, rs2091987023, rs2091988799
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Mental retardation Severe intellectual disability, Intellectual Disability rs5742905, rs267607136, rs267607137, rs2131714307, rs267607038, rs267607042, rs80338685, rs137853127, rs80338815, rs28940893, rs387906309, rs121908096, rs121908099, rs587784365, rs121918315
View all (1024 more)
28397838
Microcephaly Microcephaly rs397704721, rs267607176, rs267607177, rs397704725, rs267606717, rs267606718, rs199422202, rs121434311, rs199422203, rs199422126, rs387906274, rs121434305, rs199422125, rs199422135, rs189678019
View all (280 more)
Associations from Text Mining
Disease Name Relationship Type References
Carcinoma Non Small Cell Lung Stimulate 34363324
Neoplasm Metastasis Associate 34363324
Neoplasms Associate 34363324
Pontocerebellar Hypoplasia Type 2 Associate 36076253