Gene Gene information from NCBI Gene database.
Entrez ID 55636
Gene name Chromodomain helicase DNA binding protein 7
Gene symbol CHD7
Synonyms (NCBI Gene)
CRGHH5IS3KAL5
Chromosome 8
Chromosome location 8q12.2
Summary This gene encodes a protein that contains several helicase family domains. Mutations in this gene have been found in some patients with the CHARGE syndrome. Two transcript variants encoding different isoforms have been found for this gene. [provided by Re
SNPs SNP information provided by dbSNP.
369
SNP ID Visualize variation Clinical significance Consequence
rs16926453 T>C Benign, likely-benign, conflicting-interpretations-of-pathogenicity Coding sequence variant, synonymous variant
rs34979623 G>A Likely-benign, conflicting-interpretations-of-pathogenicity Intron variant, coding sequence variant, synonymous variant
rs41265246 G>A Benign, conflicting-interpretations-of-pathogenicity Intron variant, coding sequence variant, synonymous variant
rs41272437 A>G Likely-benign, conflicting-interpretations-of-pathogenicity Intron variant, coding sequence variant, missense variant
rs61743849 T>C Conflicting-interpretations-of-pathogenicity Intron variant, coding sequence variant, genic downstream transcript variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
330
miRTarBase ID miRNA Experiments Reference
MIRT024848 hsa-miR-215-5p Microarray 19074876
MIRT026704 hsa-miR-192-5p Microarray 19074876
MIRT027719 hsa-miR-98-5p Microarray 19088304
MIRT052070 hsa-let-7b-5p CLASH 23622248
MIRT051570 hsa-let-7e-5p CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
98
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0000785 Component Chromatin IBA
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
GO:0001501 Process Skeletal system development IMP 16155193
GO:0001568 Process Blood vessel development IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
608892 20626 ENSG00000171316
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q9P2D1
Protein name Chromodomain-helicase-DNA-binding protein 7 (CHD-7) (EC 3.6.4.-) (ATP-dependent helicase CHD7)
Protein function ATP-dependent chromatin-remodeling factor, slides nucleosomes along DNA; nucleosome sliding requires ATP (PubMed:28533432). Probable transcription regulator. May be involved in the in 45S precursor rRNA production. {ECO:0000269|PubMed:22646239,
PDB 2CKC , 2V0E , 2V0F
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00385 Chromo 800 862 Chromo (CHRromatin Organisation MOdifier) domain Domain
PF00385 Chromo 882 935 Chromo (CHRromatin Organisation MOdifier) domain Domain
PF00176 SNF2_N 932 1258 SNF2 family N-terminal domain Family
PF00271 Helicase_C 1290 1404 Helicase conserved C-terminal domain Family
PF07533 BRK 2563 2606 BRK domain Domain
PF07533 BRK 2641 2684 BRK domain Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed in fetal and adult tissues. {ECO:0000269|PubMed:15300250, ECO:0000269|PubMed:22646239}.
Sequence
MADPGMMSLFGEDGNIFSEGLEGLGECGYPENPVNPMGQQMPIDQGFASLQPSLHHPSTN
QNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSNTPGNGLASPHSQYHTPPVPQVPHGGSGG
GQMGVYPGMQNERHGQSFVDSSSMWGPRAVQVPDQIRAPYQQQQPQPQPPQPAPSGPPAQ
GHPQHMQQMGSYMARGDFSMQQHGQPQQRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQ
QSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTVP
SPTINNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQG
LMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRPGSAGI
PMEVGSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQSRPFIGMSSAPRELTGHMRPNGC
PGVGLGDPQAIQERLIPGQQHPGQQPSFQQLPTCPPLQPHPGLHHQSSPPHPHHQPWAQL
HPSPQNTPQKVPVHQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQKKKK
KKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRSKAKKDPKEPKEPK
EKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKKKVNKGKTE
GSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADAAGR
DSPSNTSQSEQQESVDAEGPVVEKIMSSRSVKKQKESGEEVEIEEFYVKYKNFSYLHCQW
ASIEDLEKDKRIQQKIKRFKAK
QGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDDRGEP
VTHYLVKWCSLPYEDSTWERRQDIDQAKIEE
FEKLMSREPETERVERPPADDWKKSESSR
EYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFL
VIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAI
ITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNT
VEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAP
KEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLI
NG
AEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLD
ILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADT
CIIFDSDWNPQNDLQAQARCHRIG
QSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQ
SMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEEDIDQILLRRTHTITI
ESEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAELDIDALNGRNNLVIDTPRVRK
QTRLYSAVKEDELMEFSDLESDSEEKPCAKPRRPQDKSQGYARSECFRVEKNLLVYGWGR
WTDILSHGRYKRQLTEQDVETICRTILVYCLNHYKGDENIKSFIWDLITPTADGQTRALV
NHSGLSAPVPRGRKGKKVKAQSTQPVVQDADWLASCNPDALFQEDSYKKHLKHHCNKVLL
RVRMLYYLRQEVIGDQADKILEGADSSEADVWIPEPFHAEVPADWWDKEADKSLLIGVFK
HGYEKYNSMRADPALCFLERVGMPDAKAIAAEQRGTDMLADGGDGGEFDREDEDPEYKPT
RTPFKDEIDEFANSPSEDKEESMEIHATGKHSESNAELGQLYWPNTSTLTTRLRRLITAY
QRSYKRQQMRQEALMKTDRRRRRPREEVRALEAEREAIISEKRQKWTRREEADFYRVVST
FGVIFDPVKQQFDWNQFRAFARLDKKSDESLEKYFSCFVAMCRRVCRMPVKPDDEPPDLS
SIIEPITEERASRTLYRIELLRKIREQVLHHPQLGERLKLCQPSLDLPEWWECGRHDRDL
LVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNPLAVGFVQTPPVISSA
HIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECEAEASSVKNELKG
VEVGADTGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTAR
DETRDGFYMEDGDPSVAQLLHERTFAFSFWPKDRVMINRLDNICEAVLKGKWPVNRRQMF
DFQGLIPGYTPTTVDSPLQKRSFAELSMVGQASISGSEDITTSPQLSKEDALNLSVPRQR
RRRRRKIEIEAERAAKRRNLMEMVAQLRESQVVSENGQEKVVDLSKASREATSSTSNFSS
LSSKFILPNVSTPVSDAFKTQMELLQAGLSRTPTRHLLNGSLVDGEPPMKRRRGRRKNVE
GLDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQLDPDTRIPVINLEDGTRL
VGEDAPKNKDLVEWLKLHPTYTVDMP
SYVPKNADVLFSSFQKPKQKRHRCRNPNKLDINT
LTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAPDWTDIVKQSGFVPESMF
DRLLTGPVVRGEGASRRGRRPKSEIARAAAAAAAVASTSGINPLLVNSLFAGMDLTSLQN
LQNLQSLQLAGLMGFPPGLATAATAGGDAKNPAAVLPLMLPGMAGLPNVFGLGGLLNNPL
SAATGNTTTASSQGEPEDSTSKGEEKGNENEDENKDSEKSTDAVSAADSANGSVGAATAP
AGLPSNPLAFNPFLLSTMAPGLFYPSMFLPPGLGGLTLPGFPALAGLQNAVGSSEEKAAD
KAEGGPFKDGETLEGSDAEESLDKTAESSLLEDEIAQGEELDSLDGGDEIENNENDE
Sequence length 2997
Interactions View interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
3871
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abnormal facial shape Likely pathogenic rs367557471 RCV000626944
Atrial septal defect Likely pathogenic rs367557471 RCV000626944
CHARGE syndrome Likely pathogenic; Pathogenic rs1804990594, rs200220845, rs398124319, rs398124321, rs1064794250, rs1809050272, rs1811207509, rs2150739129, rs2150761158, rs2150669574, rs2150669783, rs2150669843, rs2150669923, rs2150669944, rs1586341138
View all (468 more)
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RCV001385014
RCV001381842
RCV001380303
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RCV000145670
RCV000145671
RCV000145673
RCV000145676
RCV000145677
RCV000145678
RCV000145679
RCV000145682
RCV000145684
RCV000145689
RCV000145690
RCV000145692
RCV000145696
RCV000145697
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RCV002269135
RCV002269136
RCV002269137
RCV002269145
RCV002272642
RCV002272740
RCV002274455
RCV002279878
RCV002280215
RCV002283658
RCV000002100
RCV000002101
RCV000002102
RCV002287604
RCV000002105
RCV000002106
RCV000002107
RCV000002110
RCV000002111
RCV000002113
RCV000002117
RCV000002118
RCV002289419
RCV002290130
RCV002514946
RCV002516073
RCV002573592
RCV000168287
RCV002468821
RCV003062165
RCV003037295
RCV003062166
RCV003079087
RCV000175883
RCV000470769
RCV002512432
RCV000177749
RCV002512486
RCV002750798
RCV002810538
RCV002851059
RCV002856647
RCV002838451
RCV000193887
RCV000194479
RCV000193650
RCV000192729
RCV000192854
RCV000195102
RCV000193810
RCV000195205
RCV000193258
RCV000194957
RCV002871809
RCV002862633
RCV002898883
RCV002899218
RCV002885298
RCV002942341
RCV000199561
RCV000196644
RCV000199327
RCV000198147
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RCV003026443
RCV003037691
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RCV001234008
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RCV000258098
RCV000258145
RCV000258125
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RCV000258101
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RCV000258074
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RCV000258113
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RCV003324720
RCV003326303
RCV003327329
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RCV003388816
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RCV003447717
RCV003447742
RCV003447810
RCV003498013
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RCV003499020
RCV003499909
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RCV003602551
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RCV003605081
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RCV000468880
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RCV000578169
RCV000578161
RCV000578246
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RCV000634428
RCV000634417
RCV000634422
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RCV000634433
RCV000659294
RCV000659295
RCV000659297
RCV000659299
RCV000659300
RCV000659301
RCV000659302
RCV000659303
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RCV000695614
RCV000699166
RCV000703134
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RCV000758255
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RCV000767865
RCV000770777
RCV000770778
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RCV000817765
RCV000811014
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RCV000810441
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RCV000816660
RCV000796397
RCV000807220
RCV000811595
RCV000793194
RCV000807400
RCV000824233
RCV000813238
RCV000850364
RCV000850359
RCV000850395
RCV000850390
RCV000851195
RCV000853378
RCV000853388
RCV000853267
RCV000856670
RCV000856796
RCV000856767
RCV000988064
RCV000988065
RCV000988067
RCV000988068
RCV000991293
RCV001007909
RCV001043687
RCV001044320
RCV001037820
RCV001059808
RCV001040680
RCV001057662
RCV001040349
RCV001058218
RCV001041025
RCV001068912
RCV001060107
RCV001379714
RCV001195545
RCV001197619
RCV001214202
RCV001219906
RCV001223181
RCV001222705
RCV001203917
RCV001201814
RCV001211110
RCV001210647
RCV001207426
RCV001203728
RCV001213234
RCV001206597
RCV001215999
RCV001214662
RCV001227252
RCV001247158
RCV001245783
RCV001243965
RCV001227244
RCV001227917
RCV001225497
RCV001247034
RCV001249610
RCV001267753
RCV001253219
RCV001263213
RCV001261226
RCV001261223
RCV001261227
RCV001262407
RCV001268944
RCV001281079
RCV001293652
RCV001293772
CHD7 disorder Pathogenic rs2150777148 RCV001797039
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
3-Oxo-5 alpha-steroid delta 4-dehydrogenase deficiency Conflicting classifications of pathogenicity rs748511141 RCV006272154
3MC syndrome Conflicting classifications of pathogenicity rs1805405695 RCV001261225
46,XY disorder of sex development Uncertain significance rs1050246257 RCV003126300
Acute myeloid leukemia Benign rs200026248 RCV005916728
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
ACTH Deficiency Isolated Associate 23526466
Adenocarcinoma Associate 34128342
Albuminuria Associate 28152519
Alcohol Related Disorders Associate 33948885
Androgen Insensitivity Syndrome Associate 34833359
Angina Stable Associate 26813943
Arnold Chiari Malformation Associate 24979395
Atrioventricular Septal Defect Associate 25996639
Autism Spectrum Disorder Associate 23849776, 33948885, 37052590
Autistic Disorder Associate 16155193, 26590800, 33948885, 34368859