Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID	55552
Gene name	Zinc finger protein 823
Gene symbol	ZNF823
Synonyms (NCBI Gene)	HSZFP36
Chromosome	19
Chromosome location	19p13.2

137

Show/Hide all (137)

miRTarBase ID	miRNA	Experiments	Reference
MIRT016394	hsa-miR-193b-3p	Microarray	20304954
MIRT026425	hsa-miR-192-5p	Microarray	19074876
MIRT1541339	hsa-let-7a	CLIP-seq
MIRT1541340	hsa-let-7b	CLIP-seq
MIRT1541341	hsa-let-7c	CLIP-seq
MIRT1541342	hsa-let-7d	CLIP-seq
MIRT1541343	hsa-let-7e	CLIP-seq
MIRT1541344	hsa-let-7f	CLIP-seq
MIRT1541345	hsa-let-7g	CLIP-seq
MIRT1541346	hsa-let-7i	CLIP-seq
MIRT1541347	hsa-miR-1182	CLIP-seq
MIRT1541348	hsa-miR-143	CLIP-seq
MIRT1541349	hsa-miR-181a	CLIP-seq
MIRT1541350	hsa-miR-181b	CLIP-seq
MIRT1541351	hsa-miR-181c	CLIP-seq
MIRT1541352	hsa-miR-181d	CLIP-seq
MIRT1541353	hsa-miR-202	CLIP-seq
MIRT1541354	hsa-miR-3174	CLIP-seq
MIRT1541355	hsa-miR-3609	CLIP-seq
MIRT1541356	hsa-miR-3655	CLIP-seq
MIRT1541357	hsa-miR-376a	CLIP-seq
MIRT1541358	hsa-miR-376b	CLIP-seq
MIRT1541359	hsa-miR-376c	CLIP-seq
MIRT1541360	hsa-miR-3941	CLIP-seq
MIRT1541361	hsa-miR-4262	CLIP-seq
MIRT1541362	hsa-miR-433	CLIP-seq
MIRT1541363	hsa-miR-4458	CLIP-seq
MIRT1541364	hsa-miR-4500	CLIP-seq
MIRT1541365	hsa-miR-466	CLIP-seq
MIRT1541366	hsa-miR-4666-3p	CLIP-seq
MIRT1541367	hsa-miR-4672	CLIP-seq
MIRT1541368	hsa-miR-4678	CLIP-seq
MIRT1541369	hsa-miR-4684-5p	CLIP-seq
MIRT1541370	hsa-miR-4699-3p	CLIP-seq
MIRT1541371	hsa-miR-4716-5p	CLIP-seq
MIRT1541372	hsa-miR-4733-5p	CLIP-seq
MIRT1541373	hsa-miR-4738-3p	CLIP-seq
MIRT1541374	hsa-miR-4770	CLIP-seq
MIRT1541375	hsa-miR-515-5p	CLIP-seq
MIRT1541376	hsa-miR-518d-5p	CLIP-seq
MIRT1541377	hsa-miR-519b-5p	CLIP-seq
MIRT1541378	hsa-miR-519c-5p	CLIP-seq
MIRT1541379	hsa-miR-520c-5p	CLIP-seq
MIRT1541380	hsa-miR-520g	CLIP-seq
MIRT1541381	hsa-miR-520h	CLIP-seq
MIRT1541382	hsa-miR-526a	CLIP-seq
MIRT1541383	hsa-miR-548ah	CLIP-seq
MIRT1541384	hsa-miR-548n	CLIP-seq
MIRT1541385	hsa-miR-548t	CLIP-seq
MIRT1541386	hsa-miR-578	CLIP-seq
MIRT1541387	hsa-miR-606	CLIP-seq
MIRT1541388	hsa-miR-98	CLIP-seq
MIRT1541339	hsa-let-7a	CLIP-seq
MIRT1541340	hsa-let-7b	CLIP-seq
MIRT1541341	hsa-let-7c	CLIP-seq
MIRT1541342	hsa-let-7d	CLIP-seq
MIRT1541343	hsa-let-7e	CLIP-seq
MIRT1541344	hsa-let-7f	CLIP-seq
MIRT1541345	hsa-let-7g	CLIP-seq
MIRT1541346	hsa-let-7i	CLIP-seq
MIRT1541347	hsa-miR-1182	CLIP-seq
MIRT1541349	hsa-miR-181a	CLIP-seq
MIRT1541350	hsa-miR-181b	CLIP-seq
MIRT1541351	hsa-miR-181c	CLIP-seq
MIRT1541352	hsa-miR-181d	CLIP-seq
MIRT1541353	hsa-miR-202	CLIP-seq
MIRT1541354	hsa-miR-3174	CLIP-seq
MIRT1541355	hsa-miR-3609	CLIP-seq
MIRT1541357	hsa-miR-376a	CLIP-seq
MIRT1541358	hsa-miR-376b	CLIP-seq
MIRT1541359	hsa-miR-376c	CLIP-seq
MIRT1541361	hsa-miR-4262	CLIP-seq
MIRT1541363	hsa-miR-4458	CLIP-seq
MIRT1541364	hsa-miR-4500	CLIP-seq
MIRT1541366	hsa-miR-4666-3p	CLIP-seq
MIRT1541368	hsa-miR-4678	CLIP-seq
MIRT1541370	hsa-miR-4699-3p	CLIP-seq
MIRT1541371	hsa-miR-4716-5p	CLIP-seq
MIRT1541372	hsa-miR-4733-5p	CLIP-seq
MIRT1541375	hsa-miR-515-5p	CLIP-seq
MIRT1541380	hsa-miR-520g	CLIP-seq
MIRT1541381	hsa-miR-520h	CLIP-seq
MIRT1541383	hsa-miR-548ah	CLIP-seq
MIRT1541388	hsa-miR-98	CLIP-seq
MIRT1541347	hsa-miR-1182	CLIP-seq
MIRT2382564	hsa-miR-1243	CLIP-seq
MIRT2382565	hsa-miR-1278	CLIP-seq
MIRT2382566	hsa-miR-1287	CLIP-seq
MIRT2382567	hsa-miR-1290	CLIP-seq
MIRT2382568	hsa-miR-1303	CLIP-seq
MIRT1541348	hsa-miR-143	CLIP-seq
MIRT2382569	hsa-miR-144	CLIP-seq
MIRT1541349	hsa-miR-181a	CLIP-seq
MIRT1541350	hsa-miR-181b	CLIP-seq
MIRT1541351	hsa-miR-181c	CLIP-seq
MIRT1541352	hsa-miR-181d	CLIP-seq
MIRT2382570	hsa-miR-3135b	CLIP-seq
MIRT2382571	hsa-miR-3167	CLIP-seq
MIRT1541354	hsa-miR-3174	CLIP-seq
MIRT2382572	hsa-miR-331-3p	CLIP-seq
MIRT1541355	hsa-miR-3609	CLIP-seq
MIRT2382573	hsa-miR-3654	CLIP-seq
MIRT2382574	hsa-miR-3691-5p	CLIP-seq
MIRT1541357	hsa-miR-376a	CLIP-seq
MIRT1541358	hsa-miR-376b	CLIP-seq
MIRT1541359	hsa-miR-376c	CLIP-seq
MIRT1541360	hsa-miR-3941	CLIP-seq
MIRT2382575	hsa-miR-410	CLIP-seq
MIRT1541361	hsa-miR-4262	CLIP-seq
MIRT1541362	hsa-miR-433	CLIP-seq
MIRT2382576	hsa-miR-4642	CLIP-seq
MIRT1541365	hsa-miR-466	CLIP-seq
MIRT1541366	hsa-miR-4666-3p	CLIP-seq
MIRT1541367	hsa-miR-4672	CLIP-seq
MIRT1541369	hsa-miR-4684-5p	CLIP-seq
MIRT1541370	hsa-miR-4699-3p	CLIP-seq
MIRT1541371	hsa-miR-4716-5p	CLIP-seq
MIRT2382577	hsa-miR-4724-5p	CLIP-seq
MIRT1541372	hsa-miR-4733-5p	CLIP-seq
MIRT2382578	hsa-miR-4752	CLIP-seq
MIRT1541374	hsa-miR-4770	CLIP-seq
MIRT1541375	hsa-miR-515-5p	CLIP-seq
MIRT1541376	hsa-miR-518d-5p	CLIP-seq
MIRT1541377	hsa-miR-519b-5p	CLIP-seq
MIRT1541378	hsa-miR-519c-5p	CLIP-seq
MIRT1541379	hsa-miR-520c-5p	CLIP-seq
MIRT1541380	hsa-miR-520g	CLIP-seq
MIRT1541381	hsa-miR-520h	CLIP-seq
MIRT1541382	hsa-miR-526a	CLIP-seq
MIRT1541383	hsa-miR-548ah	CLIP-seq
MIRT2382579	hsa-miR-548k	CLIP-seq
MIRT1541384	hsa-miR-548n	CLIP-seq
MIRT1541385	hsa-miR-548t	CLIP-seq
MIRT2382580	hsa-miR-586	CLIP-seq
MIRT2382581	hsa-miR-7	CLIP-seq
MIRT2382582	hsa-miR-876-5p	CLIP-seq
MIRT2382583	hsa-miR-877	CLIP-seq

Show/Hide all (9)

GO ID	Ontology	Definition	Evidence
GO:0000977	Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	IBA
GO:0000981	Function	DNA-binding transcription factor activity, RNA polymerase II-specific	IBA
GO:0003677	Function	DNA binding	IEA
GO:0005634	Component	Nucleus	IBA
GO:0005634	Component	Nucleus	IEA
GO:0006355	Process	Regulation of DNA-templated transcription	IEA
GO:0006357	Process	Regulation of transcription by RNA polymerase II	IBA
GO:0008270	Function	Zinc ion binding	IEA
GO:0046872	Function	Metal ion binding	IEA

MIM	HGNC	e!Ensembl
HGNC	N/A	HGNC

P16415

Protein name

Zinc finger protein 823 (Zinc finger protein ZFP-36)

Protein function

May be involved in transcriptional regulation.

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF01352	KRAB	3 → 44	KRAB box	Family
PF13912	zf-C2H2_6	164 → 188		Domain
PF00096	zf-C2H2	220 → 242	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	248 → 270	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	304 → 326	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	360 → 382	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	416 → 438	Zinc finger, C2H2 type	Domain
PF13912	zf-C2H2_6	471 → 494		Domain
PF00096	zf-C2H2	499 → 521	Zinc finger, C2H2 type	Domain
PF00096	zf-C2H2	555 → 577	Zinc finger, C2H2 type	Domain
PF13912	zf-C2H2_6	582 → 608		Domain

Sequence

MDSVAFEDVAVNFTQEEWALLGPSQKSLYRNVMQETIRNLDCIEMKWEDQNIGDQCQNAK
RNLRSHTCEIKDDSQCGETFGQIPDSIVNKNTPRVNPCDSGECGEVVLGHSSLNCNIRVD
TGHKSCEHQEYGEKPYTHKQRGKAISHQHSFQTHERPPTGKKPFDCKECAKTFSSLGNLR
RHMAAHHGDGPYKCKLCGKAFVWPSLFHLHERTHTGEKPYECKQCSKAFPFYSSYLRHER
IHTGEKAYECKQCSKAFPDYSTYLRHERTHTGEKPYKCTQCGKAFSCYYYTRLHERTHTG
EQPYACKQCGKTFYHHTSFRRHMIRHTGDGPHKCKICGKGFDCPSSVRNHETTHTGEKPY
ECKQCGKVLSHSSSFRSHMITHTGDGPQKCKICGKAFGCPSLFQRHERTHTGEKPYQCKQ
CGKAFSLAGSLRRHEATHTGVKPYKCQCGKAFSDLSSFQNHETTHTGEKPYECKECGKAF
SCFKYLSQHKRTHTVEKPYECKTCRKAFSHFSNLKVHERIHSGEKPYECKECGKAFSWLT
CLLRHERIHTGEKPYECLQCGKAFTRSRFLRGHEKTHTGEKLYECKECGKALSSLRSLHR
HKRTHWKDTL

Sequence length

610

Interactions

View interactions

Evidence Score: ★☆☆☆☆ Gene-disease association found in Text Mining only ★★☆☆☆ Found in Text Mining and Unknown/Other Associations ★★★☆☆ Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆ ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★ ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Show/Hide Unknown Diseases (3)

Phenotype Name	Clinical Significance	Source	Evidence Score
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
AUTISM SPECTRUM DISORDER	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
HODGKINS LYMPHOMA	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
SCHIZOPHRENIA	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations

Show/Hide Text Mining Associations (1)

Disease Name	Relationship Type	References	Evidence Score
Associations from Text MiningDisease associations identified through Pubtator
Periodontitis	Associate	27302879	★★★★★ ★☆☆☆☆ Found in Text Mining only

ZNF823 (zinc finger protein 823)