Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
55217
Gene name Gene Name - the full gene name approved by the HGNC.
Trimethyllysine hydroxylase, epsilon
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
TMLHE
Synonyms (NCBI Gene) Gene synonyms aliases
AUTSX6, BBOX2, TMLD, TMLH, TMLHED, XAP130
Disease Acronyms (UniProt) Disease acronyms from UniProt database
AUTSX6
Chromosome Chromosome number
X
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
Xq28
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes the protein trimethyllysine dioxygenase which is the first enzyme in the carnitine biosynthesis pathway. Carnitine play an essential role in the transport of activated fatty acids across the inner mitochondrial membrane. The encoded prot
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs781889971 G>A Uncertain-significance, risk-factor Stop gained, coding sequence variant, non coding transcript variant
rs782624357 AT>- Pathogenic Coding sequence variant, genic downstream transcript variant, non coding transcript variant, frameshift variant
rs782785654 G>A Likely-pathogenic Coding sequence variant, non coding transcript variant, missense variant
rs782792356 T>C Pathogenic Splice acceptor variant
rs869320708 C>G Risk-factor Missense variant, non coding transcript variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT723259 hsa-miR-548ac HITS-CLIP 19536157
MIRT723258 hsa-miR-548bb-3p HITS-CLIP 19536157
MIRT723257 hsa-miR-548d-3p HITS-CLIP 19536157
MIRT723256 hsa-miR-548h-3p HITS-CLIP 19536157
MIRT723255 hsa-miR-548z HITS-CLIP 19536157
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005506 Function Iron ion binding IEA
GO:0005739 Component Mitochondrion IBA 21873635
GO:0005739 Component Mitochondrion IDA
GO:0005759 Component Mitochondrial matrix TAS
GO:0045329 Process Carnitine biosynthetic process IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
300777 18308 ENSG00000185973
Protein
UniProt ID Q9NVH6
Protein name Trimethyllysine dioxygenase, mitochondrial (EC 1.14.11.8) (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (Epsilon-trimethyllysine hydroxylase) (TML hydroxylase) (TML-alpha-ketoglutarate dioxygenase) (TML dioxygenase) (TMLD)
Protein function Converts trimethyllysine (TML) into hydroxytrimethyllysine (HTML) (PubMed:11431483, PubMed:23092983).
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF06155 GBBH-like_N 40 134 Gamma-butyrobetaine hydroxylase-like, N-terminal Domain
PF02668 TauD 151 404 Taurine catabolism dioxygenase TauD, TfdA family Domain
Tissue specificity TISSUE SPECIFICITY: All isoforms, but isoform 8, are widely expressed in adult and fetal tissues. Isoform 8 is restricted to heart and skeletal muscle. {ECO:0000269|PubMed:15754339, ECO:0000269|PubMed:17408883}.
Sequence
Sequence length 421
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Lysine degradation
Metabolic pathways
  Carnitine synthesis
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Agenesis of corpus callosum Agenesis of corpus callosum rs754914260, rs1057519053, rs1057519056, rs1057519054, rs1057519055, rs1057519057, rs1384496494, rs1599017933
Autism, x-linked AUTISM, SUSCEPTIBILITY TO, X-LINKED 6 rs28934906, rs61751362, rs28934908, rs28935468, rs267608327, rs61752992, rs61749741, rs61749743, rs61751444, rs756651509, rs1060499778, rs1555912102 21865298, 25943046, 23092983
Autism Autistic Disorder rs121964908, rs62643608, rs181327458, rs797046134, rs869312704, rs1555013332, rs876657679, rs1057518999, rs1057518658, rs771827120, rs1555187899, rs773080572, rs753871454, rs1684130791, rs1684180699
View all (8 more)
Developmental regression Developmental regression rs1224421127
Unknown
Disease term Disease name Evidence References Source
Autism Spectrum Disorder autism spectrum disorder GenCC
Associations from Text Mining
Disease Name Relationship Type References
Autism Spectrum Disorder Associate 23092983
Autistic Disorder Associate 21865298, 23092983
Breast Neoplasms Associate 40264151
Genetic Diseases Inborn Associate 29257243
Metabolism Inborn Errors Inhibit 22566635
Stomach Diseases Associate 25769450
Stomach Neoplasms Associate 25769450