Gene Gene information from NCBI Gene database.
Entrez ID 55213
Gene name RCC1 and BTB domain containing protein 1
Gene symbol RCBTB1
Synonyms (NCBI Gene)
CLLD7CLLL7GLPRDEOA
Chromosome 13
Chromosome location 13q14.2
Summary This gene encodes a protein with an N-terminal RCC1 domain and a C-terminal BTB (broad complex, tramtrack and bric-a-brac) domain. In rat, over-expression of this gene in vascular smooth muscle cells induced cellular hypertrophy. In rat, the C-terminus of
SNPs SNP information provided by dbSNP.
6
SNP ID Visualize variation Clinical significance Consequence
rs200826424 G>A Pathogenic, likely-pathogenic Genic downstream transcript variant, missense variant, non coding transcript variant, downstream transcript variant, coding sequence variant
rs368217569 C>T Pathogenic, likely-pathogenic Coding sequence variant, non coding transcript variant, missense variant, 3 prime UTR variant
rs772592456 C>A Pathogenic, likely-pathogenic Missense variant, coding sequence variant, non coding transcript variant, 3 prime UTR variant
rs777630688 T>- Likely-pathogenic Coding sequence variant, frameshift variant, non coding transcript variant
rs869312819 C>T Likely-pathogenic Splice donor variant, genic downstream transcript variant
miRNA miRNA information provided by mirtarbase database.
272
miRTarBase ID miRNA Experiments Reference
MIRT029126 hsa-miR-26b-5p Microarray 19088304
MIRT043750 hsa-miR-328-3p CLASH 23622248
MIRT054484 hsa-miR-26a-5p Luciferase reporter assayWestern blotqRT-PCR 23689287
MIRT649962 hsa-miR-4768-3p HITS-CLIP 23824327
MIRT649961 hsa-miR-3691-3p HITS-CLIP 23824327
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
5
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 28514442, 32814053, 33961781
GO:0005634 Component Nucleus IEA
GO:0005737 Component Cytoplasm IBA
GO:0005737 Component Cytoplasm IDA
GO:0006325 Process Chromatin organization IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607867 18243 ENSG00000136144
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q8NDN9
Protein name RCC1 and BTB domain-containing protein 1 (Chronic lymphocytic leukemia deletion region gene 7 protein) (CLL deletion region gene 7 protein) (Regulator of chromosome condensation and BTB domain-containing protein 1)
Protein function May be involved in cell cycle regulation by chromatin remodeling.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00415 RCC1 40 88 Regulator of chromosome condensation (RCC1) repeat Repeat
PF00415 RCC1 93 143 Regulator of chromosome condensation (RCC1) repeat Repeat
PF00415 RCC1 146 196 Regulator of chromosome condensation (RCC1) repeat Repeat
PF00415 RCC1 199 248 Regulator of chromosome condensation (RCC1) repeat Repeat
PF00415 RCC1 251 300 Regulator of chromosome condensation (RCC1) repeat Repeat
PF00651 BTB 360 467 BTB/POZ domain Domain
Tissue specificity TISSUE SPECIFICITY: Ubiquitously expressed (PubMed:11306461, PubMed:27486781). In the retina, present in the nerve fiber layer and to a lesser extent in the inner and outer plexiform layers (at protein level) (PubMed:27486781). {ECO:0000269|PubMed:1130646
Sequence
Sequence length 531
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
16
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
Coats disease Likely pathogenic; Pathogenic rs869312819, rs777630688 RCV000210240
RCV000210228
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Familial cancer of breast Likely pathogenic; Pathogenic rs368217569 RCV005891081
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Familial exudative vitreoretinopathy Likely pathogenic rs869312819 RCV000210240
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
RCBTB1-related disorder Likely pathogenic rs200826424 RCV004757981
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
ATOPIC ECZEMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
EXUDATIVE VITREORETINOPATHY GenCC
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
MULTIPLE SCLEROSIS GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Nonpapillary renal cell carcinoma Likely benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References Evidence Score
Asthma Associate 19672052
★☆☆☆☆
Found in Text Mining only
Atrophy Associate 35057699
★☆☆☆☆
Found in Text Mining only
Familial Exudative Vitreoretinopathies Associate 35876299, 37089697
★☆☆☆☆
Found in Text Mining only
Goiter Associate 27486781
★☆☆☆☆
Found in Text Mining only
Hypertensive Retinopathy Associate 34617687, 37408192
★☆☆☆☆
Found in Text Mining only
Intellectual Disability Associate 27486781
★☆☆☆☆
Found in Text Mining only
Leukemia Lymphocytic Chronic B Cell Associate 12010815
★☆☆☆☆
Found in Text Mining only
Mitochondrial Diseases Associate 37408192
★☆☆☆☆
Found in Text Mining only
Neoplasms Inhibit 20926398
★☆☆☆☆
Found in Text Mining only
Neoplasms Associate 36099812
★☆☆☆☆
Found in Text Mining only