Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
55084
Gene name Gene Name - the full gene name approved by the HGNC.
Sine oculis binding protein homolog
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
SOBP
Synonyms (NCBI Gene) Gene synonyms aliases
JXC1, MRAMS
Disease Acronyms (UniProt) Disease acronyms from UniProt database
MRAMS
Chromosome Chromosome number
6
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
6q21
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a nuclear zinc finger protein that is involved in development of the cochlea. Defects in this gene have also been linked to intellectual disability. [provided by RefSeq, Mar 2011]
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs267607078 C>T Pathogenic Coding sequence variant, stop gained
rs368271940 C>A Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT016801 hsa-miR-335-5p Microarray 18185580
MIRT043220 hsa-miR-324-5p CLASH 23622248
MIRT723626 hsa-miR-3123 HITS-CLIP 19536157
MIRT723625 hsa-miR-8076 HITS-CLIP 19536157
MIRT723624 hsa-miR-4733-5p HITS-CLIP 19536157
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005634 Component Nucleus IEA
GO:0007605 Process Sensory perception of sound IEA
GO:0007626 Process Locomotory behavior IEA
GO:0032184 Function SUMO polymer binding IEA
GO:0042472 Process Inner ear morphogenesis IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
613667 29256 ENSG00000112320
Protein
UniProt ID A7XYQ1
Protein name Sine oculis-binding protein homolog (Jackson circler protein 1)
Protein function Implicated in development of the cochlea.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF15279 SOBP 224 543 Sine oculis-binding protein Family
Sequence
MAEMEKEGRPPENKRSRKPAHPVKREINEEMKNFAENTMNELLGWYGYDKVELKDGEDIE
FRSYPTDGESRQHISVLKENSLPKPKLPEDSVISPYNISTGYSGLATGNGLSDSPAGSKD
HGSVPIIVPLIPPPFIKPPAEDDVSNVQIMCAWCQKVGIKRYSLSMGSEVKSFCSEKCFA
ACRRAYFKRNKARDEDGHAENFPQQHYAKETPRLAFKNNCELLVCDWCKHIRHTKEYLDF
GDGERRLQFCSAKCLNQYKMDIFYKETQANLPAGLCSTLHPPMENKAEGTGVQLLTPDSW
NIPLTDARRKAPSPVATAGQSQGPGPSASTTVSPSDTANCSVTKIPTPVPKSIPISETPN
IPPVSVQPPASIGPPLGVPPRSPPMVMTNRGPVPLPIFMEQQIMQQIRPPFIRGPPHHAS
NPNSPLSNPMLPGIGPPPGGPRNLGPTSSPMHRPMLSPHIHPPSTPTMPGNPPGLLPPPP
PGAPLPSLPFPPVSMMPNGPMPVPQMMNFGLPSLAPLVPPPTLLVPYPVIVPLPVPIPIP
IPI
PHVSDSKPPNGFSSNGENFIPNAPGDSAAAGGKPSGHSLSPRDSKQGSSKSADSPPG
CSGQALSLAPTPAEHGRSEVVDLTRRAGSPPGPPGAGGQLGFPGVLQGPQDGVIDLTVGH
RARLHNVIHRALHAHVKAEREPSAAERRTCGGCRDGHCSPPAAGDPGPGAPAGPEAAAAC
NVIVNGTRGAAAEGAKSAEPPPEQPPPPPPPAPPKKLLSPEEPAVSELESVKENNCASNC
HLDGEAAKKLMGEEALAGGDKSDPNLNNPADEDHAYALRMLPKTGCVIQPVPKPAEKAAM
APCIISSPMLSAGPEDLEPPLKRRCLRIRNQNK
Sequence length 873
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
Mental retardation Severe intellectual disability rs5742905, rs267607136, rs267607137, rs2131714307, rs267607038, rs267607042, rs80338685, rs137853127, rs80338815, rs28940893, rs387906309, rs121908096, rs121908099, rs587784365, rs121918315
View all (1024 more)
Unknown
Disease term Disease name Evidence References Source
Mental retardation, anterior maxillary protrusion, and strabismus MENTAL RETARDATION, ANTERIOR MAXILLARY PROTRUSION, AND STRABISMUS 21035105, 17618476 ClinVar
Schizophrenia Schizophrenia GWAS
Associations from Text Mining
Disease Name Relationship Type References
Ovarian Neoplasms Associate 33742531