Gene Gene information from NCBI Gene database.
Entrez ID 54894
Gene name Ring finger protein 43
Gene symbol RNF43
Synonyms (NCBI Gene)
RNF124SSPCSURCC
Chromosome 17
Chromosome location 17q22
Summary The protein encoded by this gene is a RING-type E3 ubiquitin ligase and is predicted to contain a transmembrane domain, a protease-associated domain, an ectodomain, and a cytoplasmic RING domain. This protein is thought to negatively regulate Wnt signalin
SNPs SNP information provided by dbSNP.
2
SNP ID Visualize variation Clinical significance Consequence
rs786205215 G>A Pathogenic Coding sequence variant, stop gained
rs1567880628 G>A Pathogenic 5 prime UTR variant, coding sequence variant, stop gained
miRNA miRNA information provided by mirtarbase database.
241
miRTarBase ID miRNA Experiments Reference
MIRT019206 hsa-miR-335-5p Microarray 18185580
MIRT1313266 hsa-miR-1184 CLIP-seq
MIRT1313267 hsa-miR-1205 CLIP-seq
MIRT1313268 hsa-miR-1224-3p CLIP-seq
MIRT1313269 hsa-miR-1231 CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
33
GO ID Ontology Definition Evidence Reference
GO:0004842 Function Ubiquitin-protein transferase activity IDA 22575959, 22895187
GO:0005109 Function Frizzled binding IBA
GO:0005109 Function Frizzled binding IEA
GO:0005109 Function Frizzled binding IPI 22895187
GO:0005515 Function Protein binding IPI 18313049, 19690564, 29769720, 33961781
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
612482 18505 ENSG00000108375
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q68DV7
Protein name E3 ubiquitin-protein ligase RNF43 (EC 2.3.2.27) (RING finger protein 43) (RING-type E3 ubiquitin transferase RNF43)
Protein function E3 ubiquitin-protein ligase that acts as a negative regulator of the Wnt signaling pathway by mediating the ubiquitination, endocytosis and subsequent degradation of Wnt receptor complex components Frizzled. Acts on both canonical and non-canoni
PDB 4KNG , 8WVU
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF18212 ZNRF_3_ecto 85 189 ZNRF-3 Ectodomain Domain
PF13639 zf-RING_2 270 313 Ring finger domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in fetal kidney, fetal lung, in colon cancer tissues, hepatocellular carcinomas and lung adenocarcinomas. Overexpressed in colorectal cancer cell lines. {ECO:0000269|PubMed:15492824, ECO:0000269|PubMed:18313049}.
Sequence
MSGGHQLQLAALWPWLLMATLQAGFGRTGLVLAAAVESERSAEQKAIIRVIPLKMDPTGK
LNLTLEGVFAGVAEITPAEGKLMQSHPLYLCNASDDDNLEPGFISIVKLESPRRAPRPCL
SLASKARMAGERGASAVLFDITEDRAAAEQLQQPLGLTWPVVLIWGNDAEKLMEFVYKNQ
KAHVRIELK
EPPAWPDYDVWILMTVVGTIFVIILASVLRIRCRPRHSRPDPLQQRTAWAI
SQLATRRYQASCRQARGEWPDSGSSCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVD
PWLHQHRTCPLCM
FNITEGDSFSQSLGPSRSYQEPGRRLHLIRQHPGHAHYHLPAAYLLG
PSRSAVARPPRPGPFLPSQEPGMGPRHHRFPRAAHPRAPGEQQRLAGAQHPYAQGWGLSH
LQSTSQHPAACPVPLRRARPPDSSGSGESYCTERSGYLADGPASDSSSGPCHGSSSDSVV
NCTDISLQGVHGSSSTFCSSLSSDFDPLVYCSPKGDPQRVDMQPSVTSRPRSLDSVVPTG
ETQVSSHVHYHRHRHHHYKKRFQWHGRKPGPETGVPQSRPPIPRTQPQPEPPSPDQQVTR
SNSAAPSGRLSNPQCPRALPEPAPGPVDASSICPSTSSLFNLQKSSLSARHPQRKRRGGP
SEPTPGSRPQDATVHPACQIFPHYTPSVAYPWSPEAHPLICGPPGLDKRLLPETPGPCYS
NSQPVWLCLTPRQPLEPHPPGEGPSEWSSDTAEGRPCPYPHCQVLSAQPGSEEELEELCE
QAV
Sequence length 783
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Wnt signaling pathway   Regulation of FZD by ubiquitination
RNF mutants show enhanced WNT signaling and proliferation
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
286
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Colon serrated polyposis Pathogenic rs786205215 RCV000170445
Neoplasm Likely pathogenic rs755128667, rs2143409098 RCV005232658
RCV004674009
Sessile serrated polyposis cancer syndrome Likely pathogenic; Pathogenic rs2143383024, rs786205215, rs2143409098, rs2509339083 RCV002463988
RCV000240616
RCV003990526
RCV003991263
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Colon adenocarcinoma Uncertain significance rs1329721997 RCV005924348
Colorectal cancer Conflicting classifications of pathogenicity rs755128667 RCV006250186
Hereditary cancer Conflicting classifications of pathogenicity rs139557480 RCV003492259
Hereditary cancer-predisposing syndrome Conflicting classifications of pathogenicity; Benign; Likely benign; Uncertain significance rs34464652, rs61746279, rs9652855, rs62636625, rs79309393, rs34523089, rs2680701, rs76384648, rs35219874, rs2257205, rs2526374, rs2158460, rs3744093, rs200626293 RCV005251281
RCV005629606
RCV005629616
RCV005638583
RCV005638582
RCV005629604
RCV005629608
RCV005914076
RCV005251282
RCV005629605
RCV005629564
RCV005629563
RCV003482144
RCV005601677
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Mucinous Associate 31231124, 32641744
Adenoma Associate 24512911, 32092099, 33098683
Adenomatous Polyposis Coli Associate 25344691, 39519399
Adenomatous Polyposis Coli Stimulate 33230914
Anodontia Associate 35254413
Arthritis Rheumatoid Associate 31905737
Breast Neoplasms Associate 37848933
Calcinosis Cutis Associate 36811382
Carcinogenesis Associate 21108931, 25825523, 26240024, 27661107, 35040131
Carcinoma Hepatocellular Associate 26823834, 40264052