GIN1 (gypsy retrotransposon integrase 1)

Gene

• Entrez ID: 54826
• Gene name: Gypsy retrotransposon integrase 1
• Gene symbol: GIN1
• Synonyms (NCBI Gene): GIN-1, TGIN1, ZH2C2
• Chromosome: 5
• Chromosome location: 5q21.1

miRNA

miRTarBase ID	miRNA	Experiments	Reference
MIRT644179	hsa-miR-548ac	HITS-CLIP	23824327
MIRT644178	hsa-miR-548bb-3p	HITS-CLIP	23824327
MIRT644177	hsa-miR-548d-3p	HITS-CLIP	23824327
MIRT644176	hsa-miR-548h-3p	HITS-CLIP	23824327
MIRT644175	hsa-miR-548z	HITS-CLIP	23824327
MIRT644174	hsa-miR-548ae-3p	HITS-CLIP	23824327
MIRT644173	hsa-miR-548ah-3p	HITS-CLIP	23824327
MIRT644172	hsa-miR-548aj-3p	HITS-CLIP	23824327
MIRT644171	hsa-miR-548am-3p	HITS-CLIP	23824327
MIRT644170	hsa-miR-548aq-3p	HITS-CLIP	23824327
MIRT644169	hsa-miR-548j-3p	HITS-CLIP	23824327
MIRT644168	hsa-miR-548x-3p	HITS-CLIP	23824327
MIRT644166	hsa-miR-4495	HITS-CLIP	23824327
MIRT644167	hsa-miR-379-3p	HITS-CLIP	23824327
MIRT644165	hsa-miR-411-3p	HITS-CLIP	23824327
MIRT644164	hsa-miR-380-3p	HITS-CLIP	23824327
MIRT644162	hsa-miR-7110-3p	HITS-CLIP	23824327
MIRT644163	hsa-miR-6817-3p	HITS-CLIP	23824327
MIRT644161	hsa-miR-130b-5p	HITS-CLIP	23824327
MIRT644160	hsa-miR-942-5p	HITS-CLIP	23824327
MIRT644159	hsa-miR-6873-3p	HITS-CLIP	23824327
MIRT644158	hsa-miR-4753-3p	HITS-CLIP	23824327
MIRT644157	hsa-miR-6836-3p	HITS-CLIP	23824327
MIRT644156	hsa-miR-4768-5p	HITS-CLIP	23824327
MIRT644155	hsa-miR-6833-3p	HITS-CLIP	23824327
MIRT644154	hsa-miR-4774-3p	HITS-CLIP	23824327
MIRT644153	hsa-miR-3152-5p	HITS-CLIP	23824327
MIRT644152	hsa-miR-129-5p	HITS-CLIP	23824327
MIRT644179	hsa-miR-548ac	HITS-CLIP	23824327
MIRT644178	hsa-miR-548bb-3p	HITS-CLIP	23824327
MIRT644177	hsa-miR-548d-3p	HITS-CLIP	23824327
MIRT644176	hsa-miR-548h-3p	HITS-CLIP	23824327
MIRT644175	hsa-miR-548z	HITS-CLIP	23824327
MIRT644174	hsa-miR-548ae-3p	HITS-CLIP	23824327
MIRT644173	hsa-miR-548ah-3p	HITS-CLIP	23824327
MIRT644172	hsa-miR-548aj-3p	HITS-CLIP	23824327
MIRT644171	hsa-miR-548am-3p	HITS-CLIP	23824327
MIRT644170	hsa-miR-548aq-3p	HITS-CLIP	23824327
MIRT644169	hsa-miR-548j-3p	HITS-CLIP	23824327
MIRT644168	hsa-miR-548x-3p	HITS-CLIP	23824327
MIRT644166	hsa-miR-4495	HITS-CLIP	23824327
MIRT644167	hsa-miR-379-3p	HITS-CLIP	23824327
MIRT644165	hsa-miR-411-3p	HITS-CLIP	23824327
MIRT644164	hsa-miR-380-3p	HITS-CLIP	23824327
MIRT644162	hsa-miR-7110-3p	HITS-CLIP	23824327
MIRT644163	hsa-miR-6817-3p	HITS-CLIP	23824327
MIRT644161	hsa-miR-130b-5p	HITS-CLIP	23824327
MIRT644160	hsa-miR-942-5p	HITS-CLIP	23824327
MIRT644159	hsa-miR-6873-3p	HITS-CLIP	23824327
MIRT644158	hsa-miR-4753-3p	HITS-CLIP	23824327
MIRT644157	hsa-miR-6836-3p	HITS-CLIP	23824327
MIRT644156	hsa-miR-4768-5p	HITS-CLIP	23824327
MIRT644155	hsa-miR-6833-3p	HITS-CLIP	23824327
MIRT644154	hsa-miR-4774-3p	HITS-CLIP	23824327
MIRT644153	hsa-miR-3152-5p	HITS-CLIP	23824327
MIRT644152	hsa-miR-129-5p	HITS-CLIP	23824327
MIRT1019036	hsa-miR-1254	CLIP-seq
MIRT1019037	hsa-miR-3116	CLIP-seq
MIRT1019038	hsa-miR-338-5p	CLIP-seq
MIRT1019039	hsa-miR-3934	CLIP-seq
MIRT1019040	hsa-miR-3942-3p	CLIP-seq
MIRT1019041	hsa-miR-4265	CLIP-seq
MIRT1019042	hsa-miR-4296	CLIP-seq
MIRT1019043	hsa-miR-4322	CLIP-seq
MIRT1019044	hsa-miR-4417	CLIP-seq
MIRT1019045	hsa-miR-4640-5p	CLIP-seq
MIRT1019046	hsa-miR-4725-5p	CLIP-seq
MIRT1019047	hsa-miR-4726-5p	CLIP-seq
MIRT1019048	hsa-miR-500a	CLIP-seq
MIRT1019049	hsa-miR-504	CLIP-seq
MIRT1019050	hsa-miR-5095	CLIP-seq
MIRT1019051	hsa-miR-552	CLIP-seq
MIRT1019052	hsa-miR-661	CLIP-seq
MIRT2001725	hsa-miR-1182	CLIP-seq
MIRT2001726	hsa-miR-1284	CLIP-seq
MIRT2001727	hsa-miR-339-5p	CLIP-seq
MIRT2001728	hsa-miR-3663-5p	CLIP-seq
MIRT2001729	hsa-miR-4287	CLIP-seq
MIRT2001730	hsa-miR-4423-5p	CLIP-seq
MIRT2001731	hsa-miR-4469	CLIP-seq
MIRT2001732	hsa-miR-4652-3p	CLIP-seq
MIRT2001733	hsa-miR-4685-3p	CLIP-seq
MIRT2234778	hsa-miR-1184	CLIP-seq
MIRT2234779	hsa-miR-1227	CLIP-seq
MIRT2234780	hsa-miR-1343	CLIP-seq
MIRT2234781	hsa-miR-196a	CLIP-seq
MIRT2234782	hsa-miR-196b	CLIP-seq
MIRT2234783	hsa-miR-323b-3p	CLIP-seq
MIRT2234784	hsa-miR-376c	CLIP-seq
MIRT2234785	hsa-miR-4284	CLIP-seq
MIRT2234786	hsa-miR-4418	CLIP-seq
MIRT2234787	hsa-miR-4479	CLIP-seq
MIRT2234788	hsa-miR-455-5p	CLIP-seq
MIRT2234789	hsa-miR-4761-5p	CLIP-seq
MIRT2234790	hsa-miR-509-3-5p	CLIP-seq
MIRT2234791	hsa-miR-509-5p	CLIP-seq
MIRT2234792	hsa-miR-615-5p	CLIP-seq
MIRT2234779	hsa-miR-1227	CLIP-seq
MIRT2538745	hsa-miR-1228	CLIP-seq
MIRT2538746	hsa-miR-3649	CLIP-seq
MIRT2234788	hsa-miR-455-5p	CLIP-seq
MIRT2538747	hsa-miR-4715-3p	CLIP-seq
MIRT2538748	hsa-miR-4735-5p	CLIP-seq
MIRT2538749	hsa-miR-4775	CLIP-seq
MIRT2538750	hsa-miR-4794	CLIP-seq
MIRT2538751	hsa-miR-590-3p	CLIP-seq
MIRT2234779	hsa-miR-1227	CLIP-seq
MIRT2538745	hsa-miR-1228	CLIP-seq
MIRT2538746	hsa-miR-3649	CLIP-seq
MIRT2234788	hsa-miR-455-5p	CLIP-seq
MIRT2538747	hsa-miR-4715-3p	CLIP-seq
MIRT2538748	hsa-miR-4735-5p	CLIP-seq
MIRT2538750	hsa-miR-4794	CLIP-seq

Gene ontology (GO)

GO ID	Ontology	Definition	Evidence	Reference
GO:0003676	Function	Nucleic acid binding	IEA
GO:0015074	Process	DNA integration	IEA

Other IDs

• MIM: HGNC
• HGNC: N/A
• e!Ensembl: HGNC

Protein

• UniProt ID: Q9NXP7
• Protein name: Gypsy retrotransposon integrase-like protein 1 (GIN-1) (Ty3/Gypsy integrase 1) (Zinc finger H2C2 domain-containing protein)
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF17921	Integrase_H2C2	65 → 124	Integrase zinc binding domain	Domain

• Tissue specificity: TISSUE SPECIFICITY: Widely expressed. Also found in tumors originating from parathyroid gland, colon, stomach, bladder, uterus and prostate. {ECO:0000269|PubMed:11470852}.
• Sequence:

  MVRSGKNGDLHLKQIAYYKRTGEYHSTTLPSERSGIRRAAKKFVFKEKKLFYVGKDRKQN
  RLVIVSEEEKKKVLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQWVYACQHCQV
  AKNTVIVAPKQHLLKVENPWSLVTVDLMGPFHTSNRSHVYAIIMTDLFTKWIVILPLCDV
  SASEVSKAIINIFFLYGPPQKIIMDQRDEFIQQINIELYRLFGIKQIVISHTSGTVNPTE
  STPNTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMPETSD
  SLHEVDGDNTSMFAKILDAIKEADKIMENKTTSLGQMENNNLDELNKSKIIVKKKPKQLN
  PFHLKVGHEVLRQRKNWWKDGRFQSEWVGPCVIDYITESGCAVLRDNTGVRLKRPIKMSH
  LKPYIRESSEQESLYLLQGSVVADHDYIGLPEIPIGAYQANILVEDATIGIVDNELLTSS
  KDRELLEYRNTKISPLIDDHSSLEKQTFSLLDSSNQVLEYLS

• Sequence length: 522