Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	54826
Gene name Gene Name - the full gene name approved by the HGNC.	Gypsy retrotransposon integrase 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	GIN1
Synonyms (NCBI Gene) Gene synonyms aliases	GIN-1, TGIN1, ZH2C2
Chromosome Chromosome number	5
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	5q21.1

Show/Hide all(113)

miRTarBase ID	miRNA	Experiments	Reference
MIRT644179	hsa-miR-548ac	HITS-CLIP	23824327
MIRT644178	hsa-miR-548bb-3p	HITS-CLIP	23824327
MIRT644177	hsa-miR-548d-3p	HITS-CLIP	23824327
MIRT644176	hsa-miR-548h-3p	HITS-CLIP	23824327
MIRT644175	hsa-miR-548z	HITS-CLIP	23824327
MIRT644174	hsa-miR-548ae-3p	HITS-CLIP	23824327
MIRT644173	hsa-miR-548ah-3p	HITS-CLIP	23824327
MIRT644172	hsa-miR-548aj-3p	HITS-CLIP	23824327
MIRT644171	hsa-miR-548am-3p	HITS-CLIP	23824327
MIRT644170	hsa-miR-548aq-3p	HITS-CLIP	23824327
MIRT644169	hsa-miR-548j-3p	HITS-CLIP	23824327
MIRT644168	hsa-miR-548x-3p	HITS-CLIP	23824327
MIRT644166	hsa-miR-4495	HITS-CLIP	23824327
MIRT644167	hsa-miR-379-3p	HITS-CLIP	23824327
MIRT644165	hsa-miR-411-3p	HITS-CLIP	23824327
MIRT644164	hsa-miR-380-3p	HITS-CLIP	23824327
MIRT644162	hsa-miR-7110-3p	HITS-CLIP	23824327
MIRT644163	hsa-miR-6817-3p	HITS-CLIP	23824327
MIRT644161	hsa-miR-130b-5p	HITS-CLIP	23824327
MIRT644160	hsa-miR-942-5p	HITS-CLIP	23824327
MIRT644159	hsa-miR-6873-3p	HITS-CLIP	23824327
MIRT644158	hsa-miR-4753-3p	HITS-CLIP	23824327
MIRT644157	hsa-miR-6836-3p	HITS-CLIP	23824327
MIRT644156	hsa-miR-4768-5p	HITS-CLIP	23824327
MIRT644155	hsa-miR-6833-3p	HITS-CLIP	23824327
MIRT644154	hsa-miR-4774-3p	HITS-CLIP	23824327
MIRT644153	hsa-miR-3152-5p	HITS-CLIP	23824327
MIRT644152	hsa-miR-129-5p	HITS-CLIP	23824327
MIRT644179	hsa-miR-548ac	HITS-CLIP	23824327
MIRT644178	hsa-miR-548bb-3p	HITS-CLIP	23824327
MIRT644177	hsa-miR-548d-3p	HITS-CLIP	23824327
MIRT644176	hsa-miR-548h-3p	HITS-CLIP	23824327
MIRT644175	hsa-miR-548z	HITS-CLIP	23824327
MIRT644174	hsa-miR-548ae-3p	HITS-CLIP	23824327
MIRT644173	hsa-miR-548ah-3p	HITS-CLIP	23824327
MIRT644172	hsa-miR-548aj-3p	HITS-CLIP	23824327
MIRT644171	hsa-miR-548am-3p	HITS-CLIP	23824327
MIRT644170	hsa-miR-548aq-3p	HITS-CLIP	23824327
MIRT644169	hsa-miR-548j-3p	HITS-CLIP	23824327
MIRT644168	hsa-miR-548x-3p	HITS-CLIP	23824327
MIRT644166	hsa-miR-4495	HITS-CLIP	23824327
MIRT644167	hsa-miR-379-3p	HITS-CLIP	23824327
MIRT644165	hsa-miR-411-3p	HITS-CLIP	23824327
MIRT644164	hsa-miR-380-3p	HITS-CLIP	23824327
MIRT644162	hsa-miR-7110-3p	HITS-CLIP	23824327
MIRT644163	hsa-miR-6817-3p	HITS-CLIP	23824327
MIRT644161	hsa-miR-130b-5p	HITS-CLIP	23824327
MIRT644160	hsa-miR-942-5p	HITS-CLIP	23824327
MIRT644159	hsa-miR-6873-3p	HITS-CLIP	23824327
MIRT644158	hsa-miR-4753-3p	HITS-CLIP	23824327
MIRT644157	hsa-miR-6836-3p	HITS-CLIP	23824327
MIRT644156	hsa-miR-4768-5p	HITS-CLIP	23824327
MIRT644155	hsa-miR-6833-3p	HITS-CLIP	23824327
MIRT644154	hsa-miR-4774-3p	HITS-CLIP	23824327
MIRT644153	hsa-miR-3152-5p	HITS-CLIP	23824327
MIRT644152	hsa-miR-129-5p	HITS-CLIP	23824327
MIRT1019036	hsa-miR-1254	CLIP-seq
MIRT1019037	hsa-miR-3116	CLIP-seq
MIRT1019038	hsa-miR-338-5p	CLIP-seq
MIRT1019039	hsa-miR-3934	CLIP-seq
MIRT1019040	hsa-miR-3942-3p	CLIP-seq
MIRT1019041	hsa-miR-4265	CLIP-seq
MIRT1019042	hsa-miR-4296	CLIP-seq
MIRT1019043	hsa-miR-4322	CLIP-seq
MIRT1019044	hsa-miR-4417	CLIP-seq
MIRT1019045	hsa-miR-4640-5p	CLIP-seq
MIRT1019046	hsa-miR-4725-5p	CLIP-seq
MIRT1019047	hsa-miR-4726-5p	CLIP-seq
MIRT1019048	hsa-miR-500a	CLIP-seq
MIRT1019049	hsa-miR-504	CLIP-seq
MIRT1019050	hsa-miR-5095	CLIP-seq
MIRT1019051	hsa-miR-552	CLIP-seq
MIRT1019052	hsa-miR-661	CLIP-seq
MIRT2001725	hsa-miR-1182	CLIP-seq
MIRT2001726	hsa-miR-1284	CLIP-seq
MIRT2001727	hsa-miR-339-5p	CLIP-seq
MIRT2001728	hsa-miR-3663-5p	CLIP-seq
MIRT2001729	hsa-miR-4287	CLIP-seq
MIRT2001730	hsa-miR-4423-5p	CLIP-seq
MIRT2001731	hsa-miR-4469	CLIP-seq
MIRT2001732	hsa-miR-4652-3p	CLIP-seq
MIRT2001733	hsa-miR-4685-3p	CLIP-seq
MIRT2234778	hsa-miR-1184	CLIP-seq
MIRT2234779	hsa-miR-1227	CLIP-seq
MIRT2234780	hsa-miR-1343	CLIP-seq
MIRT2234781	hsa-miR-196a	CLIP-seq
MIRT2234782	hsa-miR-196b	CLIP-seq
MIRT2234783	hsa-miR-323b-3p	CLIP-seq
MIRT2234784	hsa-miR-376c	CLIP-seq
MIRT2234785	hsa-miR-4284	CLIP-seq
MIRT2234786	hsa-miR-4418	CLIP-seq
MIRT2234787	hsa-miR-4479	CLIP-seq
MIRT2234788	hsa-miR-455-5p	CLIP-seq
MIRT2234789	hsa-miR-4761-5p	CLIP-seq
MIRT2234790	hsa-miR-509-3-5p	CLIP-seq
MIRT2234791	hsa-miR-509-5p	CLIP-seq
MIRT2234792	hsa-miR-615-5p	CLIP-seq
MIRT2234779	hsa-miR-1227	CLIP-seq
MIRT2538745	hsa-miR-1228	CLIP-seq
MIRT2538746	hsa-miR-3649	CLIP-seq
MIRT2234788	hsa-miR-455-5p	CLIP-seq
MIRT2538747	hsa-miR-4715-3p	CLIP-seq
MIRT2538748	hsa-miR-4735-5p	CLIP-seq
MIRT2538749	hsa-miR-4775	CLIP-seq
MIRT2538750	hsa-miR-4794	CLIP-seq
MIRT2538751	hsa-miR-590-3p	CLIP-seq
MIRT2234779	hsa-miR-1227	CLIP-seq
MIRT2538745	hsa-miR-1228	CLIP-seq
MIRT2538746	hsa-miR-3649	CLIP-seq
MIRT2234788	hsa-miR-455-5p	CLIP-seq
MIRT2538747	hsa-miR-4715-3p	CLIP-seq
MIRT2538748	hsa-miR-4735-5p	CLIP-seq
MIRT2538750	hsa-miR-4794	CLIP-seq

Show/Hide all(2)

GO ID	Ontology	Definition	Evidence	Reference
GO:0003676	Function	Nucleic acid binding	IEA
GO:0015074	Process	DNA integration	IEA

MIM	HGNC	e!Ensembl
HGNC	N/A	HGNC

Protein

UniProt ID

Q9NXP7

Protein name

Gypsy retrotransposon integrase-like protein 1 (GIN-1) (Ty3/Gypsy integrase 1) (Zinc finger H2C2 domain-containing protein)

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF17921	Integrase_H2C2	65 → 124	Integrase zinc binding domain	Domain

Tissue specificity

TISSUE SPECIFICITY: Widely expressed. Also found in tumors originating from parathyroid gland, colon, stomach, bladder, uterus and prostate. {ECO:0000269|PubMed:11470852}.

Sequence

MVRSGKNGDLHLKQIAYYKRTGEYHSTTLPSERSGIRRAAKKFVFKEKKLFYVGKDRKQN
RLVIVSEEEKKKVLRECHENDSGAHHGISRTLTLVESNYYWTSVTNDVKQWVYACQHCQV
AKNTVIVAPKQHLLKVENPWSLVTVDLMGPFHTSNRSHVYAIIMTDLFTKWIVILPLCDV
SASEVSKAIINIFFLYGPPQKIIMDQRDEFIQQINIELYRLFGIKQIVISHTSGTVNPTE
STPNTIKAFLSKHCADHPNNWDDHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMPETSD
SLHEVDGDNTSMFAKILDAIKEADKIMENKTTSLGQMENNNLDELNKSKIIVKKKPKQLN
PFHLKVGHEVLRQRKNWWKDGRFQSEWVGPCVIDYITESGCAVLRDNTGVRLKRPIKMSH
LKPYIRESSEQESLYLLQGSVVADHDYIGLPEIPIGAYQANILVEDATIGIVDNELLTSS
KDRELLEYRNTKISPLIDDHSSLEKQTFSLLDSSNQVLEYLS

Sequence length

522

Interactions

View interactions

Show/Hide Unknown Diseases (3)

Disease merge term	Disease name	Evidence	References	Source
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Diabetes	Type 2 diabetes	N/A	N/A	GWAS
Insomnia	Insomnia	N/A	N/A	GWAS
Restless Legs Syndrome	Restless legs syndrome	N/A	N/A	GWAS

Show/Hide Text Mining Associations (1)

Disease Name	Relationship Type	References
Associations from Text Mining Disease associations identified through Pubtator
Atrial Fibrillation	Associate	31894294

GIN1 (gypsy retrotransposon integrase 1)