Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
54802
Gene name Gene Name - the full gene name approved by the HGNC.
TRNA isopentenyltransferase 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
TRIT1
Synonyms (NCBI Gene) Gene synonyms aliases
COXPD35, GRO1, IPPT, IPT, IPTase, MOD5, hGRO1
Disease Acronyms (UniProt) Disease acronyms from UniProt database
COXPD35
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1p34.2
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a protein that that is targeted to the mitochondrion and modifies transfer RNAs (tRNAs) by adding a dimethylallyl group onto the adenine at position 37. This modification is important for maintaining the correct reading frame during prot
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs146838322 A>G Likely-pathogenic Missense variant, 5 prime UTR variant, non coding transcript variant, coding sequence variant, intron variant
rs184469579 G>A,C Likely-pathogenic, uncertain-significance Non coding transcript variant, missense variant, coding sequence variant, 5 prime UTR variant, stop gained, genic upstream transcript variant
rs536000212 G>- Likely-pathogenic Non coding transcript variant, coding sequence variant, intron variant, frameshift variant, 5 prime UTR variant
rs1047420796 C>T Pathogenic, uncertain-significance Coding sequence variant, missense variant, non coding transcript variant, intron variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT047047 hsa-miR-183-5p CLASH 23622248
MIRT052858 hsa-miR-3615 CLASH 23622248
MIRT1456665 hsa-miR-377 CLIP-seq
MIRT1456666 hsa-miR-4468 CLIP-seq
MIRT1456667 hsa-miR-4643 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0003676 Function Nucleic acid binding IEA
GO:0005524 Function ATP binding IEA
GO:0005575 Component Cellular_component ND
GO:0005739 Component Mitochondrion IBA 21873635
GO:0005739 Component Mitochondrion IDA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
617840 20286 ENSG00000043514
Protein
UniProt ID Q9H3H1
Protein name tRNA dimethylallyltransferase (EC 2.5.1.75) (Isopentenyl-diphosphate:tRNA isopentenyltransferase) (IPP transferase) (IPPT) (hGRO1) (tRNA isopentenyltransferase 1) (IPTase)
Protein function Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 of both cytosolic and mitochondrial tRNAs, leading to the formation of N6-(dimethylallyl)adenosine (i6A37) (PubMed:11111046, PubMed:24126054, PubMed:24901367, PubMed
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF01715 IPPT 58 334 Domain
PF12171 zf-C2H2_jaz 395 420 Zinc-finger double-stranded RNA-binding Family
Sequence
Sequence length 467
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Metabolic pathways   tRNA modification in the mitochondrion
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Combined oxidative phosphorylation deficiency COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 35 rs587776508, rs576462794, rs118203917, rs387906327, rs139430866, rs387906962, rs138119149, rs387907061, rs1562800908, rs397515421, rs397514598, rs397514610, rs397514611, rs397514612, rs201431517
View all (155 more)
28185376, 24901367
Developmental delay Global developmental delay rs28941770, rs199469464, rs281865469, rs143747297, rs398123009, rs587777428, rs786205133, rs606231459, rs797044854, rs797045027, rs864309504, rs878853160, rs886039902, rs886042046, rs886041291
View all (32 more)
24901367
Epileptic encephalopathy Encephalopathies, Epileptic encephalopathy rs587776508, rs121918334, rs121918317, rs121918321, rs74315390, rs28939684, rs74315391, rs74315392, rs118192244, rs121918622, rs121918623, rs121917953, rs121917955, rs121918624, rs121918625
View all (860 more)
Mental retardation Intellectual Disability rs5742905, rs267607136, rs267607137, rs2131714307, rs267607038, rs267607042, rs80338685, rs137853127, rs80338815, rs28940893, rs387906309, rs121908096, rs121908099, rs587784365, rs121918315
View all (1024 more)
Unknown
Disease term Disease name Evidence References Source
Mitochondrial Diseases mitochondrial disease GenCC
Associations from Text Mining
Disease Name Relationship Type References
Breast Neoplasms Associate 27150055
Esophageal Neoplasms Associate 39287291
Lung Neoplasms Associate 17145094, 30991224
Mitochondrial Diseases Associate 24901367
Neoplasms Inhibit 23898186
Neoplasms Associate 24126054, 30991224, 36460334