RNF111 (ring finger protein 111)

Gene

• Entrez ID: 54778
• Gene name: Ring finger protein 111
• Gene symbol: RNF111
• Synonyms (NCBI Gene): ARK, hRNF111
• Chromosome: 15
• Chromosome location: 15q22.1-q22.2
• Summary: The protein encoded by this gene is a nuclear RING-domain containing E3 ubiquitin ligase. This protein interacts with the transforming growth factor (TGF) -beta/NODAL signaling pathway by promoting the ubiquitination and proteosomal degradation of negativ

miRNA

miRTarBase ID	miRNA	Experiments	Reference
MIRT021196	hsa-miR-186-5p	Sequencing	20371350
MIRT027713	hsa-miR-98-5p	Microarray	19088304
MIRT029993	hsa-miR-26b-5p	Microarray	19088304
MIRT031301	hsa-miR-19b-3p	Sequencing	20371350
MIRT031911	hsa-miR-16-5p	Microarray	21199864
MIRT042148	hsa-miR-484	CLASH	23622248
MIRT534698	hsa-miR-153-5p	PAR-CLIP	22012620
MIRT534697	hsa-miR-130a-5p	PAR-CLIP	22012620
MIRT534696	hsa-miR-23a-3p	PAR-CLIP	22012620
MIRT534695	hsa-miR-23b-3p	PAR-CLIP	22012620
MIRT534694	hsa-miR-23c	PAR-CLIP	22012620
MIRT534693	hsa-miR-6875-3p	PAR-CLIP	22012620
MIRT534692	hsa-miR-4659a-3p	PAR-CLIP	22012620
MIRT534691	hsa-miR-4659b-3p	PAR-CLIP	22012620
MIRT513691	hsa-miR-101-3p	PAR-CLIP	23446348
MIRT513692	hsa-miR-144-3p	PAR-CLIP	23446348
MIRT513691	hsa-miR-101-3p	PAR-CLIP	23446348
MIRT513690	hsa-miR-3662	PAR-CLIP	23446348
MIRT513689	hsa-miR-545-5p	PAR-CLIP	23446348
MIRT513688	hsa-miR-548aj-5p	PAR-CLIP	23446348
MIRT513687	hsa-miR-548f-5p	PAR-CLIP	23446348
MIRT513686	hsa-miR-548g-5p	PAR-CLIP	23446348
MIRT513685	hsa-miR-548x-5p	PAR-CLIP	23446348
MIRT513684	hsa-miR-1468-3p	PAR-CLIP	23446348
MIRT513683	hsa-miR-548aw	PAR-CLIP	23446348
MIRT469188	hsa-miR-1911-3p	PAR-CLIP	23592263
MIRT469187	hsa-miR-6753-5p	PAR-CLIP	23592263
MIRT469186	hsa-miR-4418	PAR-CLIP	23592263
MIRT469185	hsa-miR-509-3-5p	PAR-CLIP	23592263
MIRT469184	hsa-miR-509-5p	PAR-CLIP	23592263
MIRT469183	hsa-miR-6873-5p	PAR-CLIP	23592263
MIRT469182	hsa-miR-4476	PAR-CLIP	23592263
MIRT469181	hsa-miR-6876-5p	PAR-CLIP	23592263
MIRT469180	hsa-miR-2392	PAR-CLIP	23592263
MIRT469179	hsa-miR-1321	PAR-CLIP	23592263
MIRT469178	hsa-miR-4739	PAR-CLIP	23592263
MIRT469177	hsa-miR-4756-5p	PAR-CLIP	23592263
MIRT469176	hsa-miR-624-5p	PAR-CLIP	23592263
MIRT469175	hsa-miR-4712-3p	PAR-CLIP	23592263
MIRT469174	hsa-miR-17-3p	PAR-CLIP	23592263
MIRT469173	hsa-miR-5002-3p	PAR-CLIP	23592263
MIRT469172	hsa-miR-4419a	PAR-CLIP	23592263
MIRT469171	hsa-miR-4510	PAR-CLIP	23592263
MIRT469170	hsa-miR-6127	PAR-CLIP	23592263
MIRT469169	hsa-miR-6129	PAR-CLIP	23592263
MIRT469168	hsa-miR-6130	PAR-CLIP	23592263
MIRT469167	hsa-miR-6133	PAR-CLIP	23592263
MIRT469166	hsa-miR-3616-3p	PAR-CLIP	23592263
MIRT469165	hsa-miR-4533	PAR-CLIP	23592263
MIRT469164	hsa-miR-31-5p	PAR-CLIP	23592263
MIRT469163	hsa-miR-6716-5p	PAR-CLIP	23592263
MIRT469162	hsa-miR-149-3p	PAR-CLIP	23592263
MIRT469161	hsa-miR-4728-5p	PAR-CLIP	23592263
MIRT469159	hsa-miR-6785-5p	PAR-CLIP	23592263
MIRT469160	hsa-miR-6883-5p	PAR-CLIP	23592263
MIRT439762	hsa-miR-21-5p	HITS-CLIP	22473208
MIRT726736	hsa-miR-19a-3p	HITS-CLIP	22473208
MIRT031301	hsa-miR-19b-3p	HITS-CLIP	22473208
MIRT439762	hsa-miR-21-5p	HITS-CLIP	22473208
MIRT469179	hsa-miR-1321	PAR-CLIP	26701625
MIRT469179	hsa-miR-1321	PAR-CLIP	26701625
MIRT469179	hsa-miR-1321	PAR-CLIP	26701625
MIRT469179	hsa-miR-1321	PAR-CLIP	26701625
MIRT469162	hsa-miR-149-3p	PAR-CLIP	26701625
MIRT469162	hsa-miR-149-3p	PAR-CLIP	26701625
MIRT469162	hsa-miR-149-3p	PAR-CLIP	26701625
MIRT469162	hsa-miR-149-3p	PAR-CLIP	26701625
MIRT469174	hsa-miR-17-3p	PAR-CLIP	26701625
MIRT469174	hsa-miR-17-3p	PAR-CLIP	26701625
MIRT469188	hsa-miR-1911-3p	PAR-CLIP	26701625
MIRT469188	hsa-miR-1911-3p	PAR-CLIP	26701625
MIRT469188	hsa-miR-1911-3p	PAR-CLIP	26701625
MIRT469188	hsa-miR-1911-3p	PAR-CLIP	26701625
MIRT469180	hsa-miR-2392	PAR-CLIP	26701625
MIRT469180	hsa-miR-2392	PAR-CLIP	26701625
MIRT469180	hsa-miR-2392	PAR-CLIP	26701625
MIRT469180	hsa-miR-2392	PAR-CLIP	26701625
MIRT469164	hsa-miR-31-5p	PAR-CLIP	26701625
MIRT469164	hsa-miR-31-5p	PAR-CLIP	26701625
MIRT469164	hsa-miR-31-5p	PAR-CLIP	26701625
MIRT469164	hsa-miR-31-5p	PAR-CLIP	26701625
MIRT469166	hsa-miR-3616-3p	PAR-CLIP	26701625
MIRT469166	hsa-miR-3616-3p	PAR-CLIP	26701625
MIRT469166	hsa-miR-3616-3p	PAR-CLIP	26701625
MIRT469166	hsa-miR-3616-3p	PAR-CLIP	26701625
MIRT469186	hsa-miR-4418	PAR-CLIP	26701625
MIRT469186	hsa-miR-4418	PAR-CLIP	26701625
MIRT469172	hsa-miR-4419a	PAR-CLIP	26701625
MIRT469172	hsa-miR-4419a	PAR-CLIP	26701625
MIRT469172	hsa-miR-4419a	PAR-CLIP	26701625
MIRT469172	hsa-miR-4419a	PAR-CLIP	26701625
MIRT469182	hsa-miR-4476	PAR-CLIP	26701625
MIRT469182	hsa-miR-4476	PAR-CLIP	26701625
MIRT469182	hsa-miR-4476	PAR-CLIP	26701625
MIRT469182	hsa-miR-4476	PAR-CLIP	26701625
MIRT469171	hsa-miR-4510	PAR-CLIP	26701625
MIRT469171	hsa-miR-4510	PAR-CLIP	26701625
MIRT469171	hsa-miR-4510	PAR-CLIP	26701625
MIRT469171	hsa-miR-4510	PAR-CLIP	26701625
MIRT469165	hsa-miR-4533	PAR-CLIP	26701625
MIRT469165	hsa-miR-4533	PAR-CLIP	26701625
MIRT469165	hsa-miR-4533	PAR-CLIP	26701625
MIRT469165	hsa-miR-4533	PAR-CLIP	26701625
MIRT469175	hsa-miR-4712-3p	PAR-CLIP	26701625
MIRT469175	hsa-miR-4712-3p	PAR-CLIP	26701625
MIRT469175	hsa-miR-4712-3p	PAR-CLIP	26701625
MIRT469175	hsa-miR-4712-3p	PAR-CLIP	26701625
MIRT469161	hsa-miR-4728-5p	PAR-CLIP	26701625
MIRT469161	hsa-miR-4728-5p	PAR-CLIP	26701625
MIRT469161	hsa-miR-4728-5p	PAR-CLIP	26701625
MIRT469161	hsa-miR-4728-5p	PAR-CLIP	26701625
MIRT469178	hsa-miR-4739	PAR-CLIP	26701625
MIRT469178	hsa-miR-4739	PAR-CLIP	26701625
MIRT469178	hsa-miR-4739	PAR-CLIP	26701625
MIRT469178	hsa-miR-4739	PAR-CLIP	26701625
MIRT469177	hsa-miR-4756-5p	PAR-CLIP	26701625
MIRT469177	hsa-miR-4756-5p	PAR-CLIP	26701625
MIRT469177	hsa-miR-4756-5p	PAR-CLIP	26701625
MIRT469177	hsa-miR-4756-5p	PAR-CLIP	26701625
MIRT469173	hsa-miR-5002-3p	PAR-CLIP	26701625
MIRT469173	hsa-miR-5002-3p	PAR-CLIP	26701625
MIRT469185	hsa-miR-509-3-5p	PAR-CLIP	26701625
MIRT469185	hsa-miR-509-3-5p	PAR-CLIP	26701625
MIRT469184	hsa-miR-509-5p	PAR-CLIP	26701625
MIRT469184	hsa-miR-509-5p	PAR-CLIP	26701625
MIRT469170	hsa-miR-6127	PAR-CLIP	26701625
MIRT469170	hsa-miR-6127	PAR-CLIP	26701625
MIRT469170	hsa-miR-6127	PAR-CLIP	26701625
MIRT469170	hsa-miR-6127	PAR-CLIP	26701625
MIRT469169	hsa-miR-6129	PAR-CLIP	26701625
MIRT469169	hsa-miR-6129	PAR-CLIP	26701625
MIRT469169	hsa-miR-6129	PAR-CLIP	26701625
MIRT469169	hsa-miR-6129	PAR-CLIP	26701625
MIRT469168	hsa-miR-6130	PAR-CLIP	26701625
MIRT469168	hsa-miR-6130	PAR-CLIP	26701625
MIRT469168	hsa-miR-6130	PAR-CLIP	26701625
MIRT469168	hsa-miR-6130	PAR-CLIP	26701625
MIRT469167	hsa-miR-6133	PAR-CLIP	26701625
MIRT469167	hsa-miR-6133	PAR-CLIP	26701625
MIRT469167	hsa-miR-6133	PAR-CLIP	26701625
MIRT469167	hsa-miR-6133	PAR-CLIP	26701625
MIRT469176	hsa-miR-624-5p	PAR-CLIP	26701625
MIRT469176	hsa-miR-624-5p	PAR-CLIP	26701625
MIRT469176	hsa-miR-624-5p	PAR-CLIP	26701625
MIRT469176	hsa-miR-624-5p	PAR-CLIP	26701625
MIRT469163	hsa-miR-6716-5p	PAR-CLIP	26701625
MIRT469163	hsa-miR-6716-5p	PAR-CLIP	26701625
MIRT469163	hsa-miR-6716-5p	PAR-CLIP	26701625
MIRT469163	hsa-miR-6716-5p	PAR-CLIP	26701625
MIRT469187	hsa-miR-6753-5p	PAR-CLIP	26701625
MIRT469187	hsa-miR-6753-5p	PAR-CLIP	26701625
MIRT469187	hsa-miR-6753-5p	PAR-CLIP	26701625
MIRT469187	hsa-miR-6753-5p	PAR-CLIP	26701625
MIRT469159	hsa-miR-6785-5p	PAR-CLIP	26701625
MIRT469159	hsa-miR-6785-5p	PAR-CLIP	26701625
MIRT469159	hsa-miR-6785-5p	PAR-CLIP	26701625
MIRT469159	hsa-miR-6785-5p	PAR-CLIP	26701625
MIRT469183	hsa-miR-6873-5p	PAR-CLIP	26701625
MIRT469183	hsa-miR-6873-5p	PAR-CLIP	26701625
MIRT469183	hsa-miR-6873-5p	PAR-CLIP	26701625
MIRT469183	hsa-miR-6873-5p	PAR-CLIP	26701625
MIRT469181	hsa-miR-6876-5p	PAR-CLIP	26701625
MIRT469181	hsa-miR-6876-5p	PAR-CLIP	26701625
MIRT469181	hsa-miR-6876-5p	PAR-CLIP	26701625
MIRT469181	hsa-miR-6876-5p	PAR-CLIP	26701625
MIRT469160	hsa-miR-6883-5p	PAR-CLIP	26701625
MIRT469160	hsa-miR-6883-5p	PAR-CLIP	26701625
MIRT469160	hsa-miR-6883-5p	PAR-CLIP	26701625
MIRT469160	hsa-miR-6883-5p	PAR-CLIP	26701625
MIRT534698	hsa-miR-153-5p	PAR-CLIP	22012620
MIRT534697	hsa-miR-130a-5p	PAR-CLIP	22012620
MIRT534696	hsa-miR-23a-3p	PAR-CLIP	22012620
MIRT534695	hsa-miR-23b-3p	PAR-CLIP	22012620
MIRT534694	hsa-miR-23c	PAR-CLIP	22012620
MIRT534693	hsa-miR-6875-3p	PAR-CLIP	22012620
MIRT534692	hsa-miR-4659a-3p	PAR-CLIP	22012620
MIRT534691	hsa-miR-4659b-3p	PAR-CLIP	22012620
MIRT513691	hsa-miR-101-3p	PAR-CLIP	23446348
MIRT513692	hsa-miR-144-3p	PAR-CLIP	23446348
MIRT513691	hsa-miR-101-3p	PAR-CLIP	23446348
MIRT513690	hsa-miR-3662	PAR-CLIP	23446348
MIRT513689	hsa-miR-545-5p	PAR-CLIP	23446348
MIRT513688	hsa-miR-548aj-5p	PAR-CLIP	23446348
MIRT513687	hsa-miR-548f-5p	PAR-CLIP	23446348
MIRT513686	hsa-miR-548g-5p	PAR-CLIP	23446348
MIRT513685	hsa-miR-548x-5p	PAR-CLIP	23446348
MIRT513684	hsa-miR-1468-3p	PAR-CLIP	23446348
MIRT513683	hsa-miR-548aw	PAR-CLIP	23446348
MIRT469188	hsa-miR-1911-3p	PAR-CLIP	23592263
MIRT469187	hsa-miR-6753-5p	PAR-CLIP	23592263
MIRT469186	hsa-miR-4418	PAR-CLIP	23592263
MIRT469185	hsa-miR-509-3-5p	PAR-CLIP	23592263
MIRT469184	hsa-miR-509-5p	PAR-CLIP	23592263
MIRT469183	hsa-miR-6873-5p	PAR-CLIP	23592263
MIRT469182	hsa-miR-4476	PAR-CLIP	23592263
MIRT469181	hsa-miR-6876-5p	PAR-CLIP	23592263
MIRT469180	hsa-miR-2392	PAR-CLIP	23592263
MIRT469179	hsa-miR-1321	PAR-CLIP	23592263
MIRT469178	hsa-miR-4739	PAR-CLIP	23592263
MIRT469177	hsa-miR-4756-5p	PAR-CLIP	23592263
MIRT469176	hsa-miR-624-5p	PAR-CLIP	23592263
MIRT469175	hsa-miR-4712-3p	PAR-CLIP	23592263
MIRT469174	hsa-miR-17-3p	PAR-CLIP	23592263
MIRT469173	hsa-miR-5002-3p	PAR-CLIP	23592263
MIRT469172	hsa-miR-4419a	PAR-CLIP	23592263
MIRT469171	hsa-miR-4510	PAR-CLIP	23592263
MIRT469170	hsa-miR-6127	PAR-CLIP	23592263
MIRT469169	hsa-miR-6129	PAR-CLIP	23592263
MIRT469168	hsa-miR-6130	PAR-CLIP	23592263
MIRT469167	hsa-miR-6133	PAR-CLIP	23592263
MIRT469166	hsa-miR-3616-3p	PAR-CLIP	23592263
MIRT469165	hsa-miR-4533	PAR-CLIP	23592263
MIRT469164	hsa-miR-31-5p	PAR-CLIP	23592263
MIRT469163	hsa-miR-6716-5p	PAR-CLIP	23592263
MIRT469162	hsa-miR-149-3p	PAR-CLIP	23592263
MIRT469161	hsa-miR-4728-5p	PAR-CLIP	23592263
MIRT469159	hsa-miR-6785-5p	PAR-CLIP	23592263
MIRT469160	hsa-miR-6883-5p	PAR-CLIP	23592263
MIRT1309241	hsa-miR-1	CLIP-seq
MIRT1309242	hsa-miR-101	CLIP-seq
MIRT1309243	hsa-miR-1182	CLIP-seq
MIRT1309244	hsa-miR-1275	CLIP-seq
MIRT1309245	hsa-miR-127-5p	CLIP-seq
MIRT1309246	hsa-miR-1292	CLIP-seq
MIRT1309247	hsa-miR-144	CLIP-seq
MIRT1309248	hsa-miR-155	CLIP-seq
MIRT1309249	hsa-miR-188-5p	CLIP-seq
MIRT1309250	hsa-miR-19a	CLIP-seq
MIRT1309251	hsa-miR-19b	CLIP-seq
MIRT1309252	hsa-miR-206	CLIP-seq
MIRT1309253	hsa-miR-21	CLIP-seq
MIRT1309254	hsa-miR-2115	CLIP-seq
MIRT1309255	hsa-miR-224	CLIP-seq
MIRT1309256	hsa-miR-2276	CLIP-seq
MIRT1309257	hsa-miR-2355-3p	CLIP-seq
MIRT1309258	hsa-miR-23a	CLIP-seq
MIRT1309259	hsa-miR-23b	CLIP-seq
MIRT1309260	hsa-miR-2909	CLIP-seq
MIRT1309261	hsa-miR-298	CLIP-seq
MIRT1309262	hsa-miR-300	CLIP-seq
MIRT1309263	hsa-miR-3065-5p	CLIP-seq
MIRT1309264	hsa-miR-3120-3p	CLIP-seq
MIRT1309265	hsa-miR-3125	CLIP-seq
MIRT1309266	hsa-miR-3126-3p	CLIP-seq
MIRT1309267	hsa-miR-3129-3p	CLIP-seq
MIRT1309268	hsa-miR-3136-5p	CLIP-seq
MIRT1309269	hsa-miR-3143	CLIP-seq
MIRT1309270	hsa-miR-3148	CLIP-seq
MIRT1309271	hsa-miR-3150a-5p	CLIP-seq
MIRT1309272	hsa-miR-3150b-5p	CLIP-seq
MIRT1309273	hsa-miR-323-3p	CLIP-seq
MIRT1309274	hsa-miR-331-3p	CLIP-seq
MIRT1309275	hsa-miR-335	CLIP-seq
MIRT1309276	hsa-miR-338-5p	CLIP-seq
MIRT1309277	hsa-miR-3609	CLIP-seq
MIRT1309278	hsa-miR-374c	CLIP-seq
MIRT1309279	hsa-miR-381	CLIP-seq
MIRT1309280	hsa-miR-3913-3p	CLIP-seq
MIRT1309281	hsa-miR-3914	CLIP-seq
MIRT1309282	hsa-miR-3916	CLIP-seq
MIRT1309283	hsa-miR-412	CLIP-seq
MIRT1309284	hsa-miR-4439	CLIP-seq
MIRT1309285	hsa-miR-4457	CLIP-seq
MIRT1309286	hsa-miR-4471	CLIP-seq
MIRT1309287	hsa-miR-4477b	CLIP-seq
MIRT1309288	hsa-miR-4496	CLIP-seq
MIRT1309289	hsa-miR-4517	CLIP-seq
MIRT1309290	hsa-miR-4524	CLIP-seq
MIRT1309291	hsa-miR-4525	CLIP-seq
MIRT1309292	hsa-miR-455-5p	CLIP-seq
MIRT1309293	hsa-miR-4646-3p	CLIP-seq
MIRT1309294	hsa-miR-4665-5p	CLIP-seq
MIRT1309295	hsa-miR-4667-5p	CLIP-seq
MIRT1309296	hsa-miR-4668-3p	CLIP-seq
MIRT1309297	hsa-miR-4700-5p	CLIP-seq
MIRT1309298	hsa-miR-4723-5p	CLIP-seq
MIRT1309299	hsa-miR-4731-3p	CLIP-seq
MIRT1309300	hsa-miR-4732-3p	CLIP-seq
MIRT1309301	hsa-miR-4762-5p	CLIP-seq
MIRT1309302	hsa-miR-4764-3p	CLIP-seq
MIRT1309303	hsa-miR-4777-5p	CLIP-seq
MIRT1309304	hsa-miR-4786-3p	CLIP-seq
MIRT1309305	hsa-miR-4789-5p	CLIP-seq
MIRT1309306	hsa-miR-4801	CLIP-seq
MIRT1309307	hsa-miR-489	CLIP-seq
MIRT1309308	hsa-miR-491-3p	CLIP-seq
MIRT1309309	hsa-miR-513b	CLIP-seq
MIRT1309310	hsa-miR-516a-3p	CLIP-seq
MIRT1309311	hsa-miR-518a-5p	CLIP-seq
MIRT1309312	hsa-miR-518d-5p	CLIP-seq
MIRT1309313	hsa-miR-519b-5p	CLIP-seq
MIRT1309314	hsa-miR-519c-5p	CLIP-seq
MIRT1309315	hsa-miR-520c-5p	CLIP-seq
MIRT1309316	hsa-miR-526a	CLIP-seq
MIRT1309317	hsa-miR-527	CLIP-seq
MIRT1309318	hsa-miR-543	CLIP-seq
MIRT1309319	hsa-miR-548ag	CLIP-seq
MIRT1309320	hsa-miR-548ah	CLIP-seq
MIRT1309321	hsa-miR-548ai	CLIP-seq
MIRT1309322	hsa-miR-548c-3p	CLIP-seq
MIRT1309323	hsa-miR-548n	CLIP-seq
MIRT1309324	hsa-miR-548t	CLIP-seq
MIRT1309325	hsa-miR-549	CLIP-seq
MIRT1309326	hsa-miR-563	CLIP-seq
MIRT1309327	hsa-miR-577	CLIP-seq
MIRT1309328	hsa-miR-590-5p	CLIP-seq
MIRT1309329	hsa-miR-605	CLIP-seq
MIRT1309330	hsa-miR-613	CLIP-seq
MIRT1309331	hsa-miR-624	CLIP-seq
MIRT1309332	hsa-miR-625	CLIP-seq
MIRT1309333	hsa-miR-637	CLIP-seq
MIRT1309334	hsa-miR-640	CLIP-seq
MIRT1309335	hsa-miR-653	CLIP-seq
MIRT1309336	hsa-miR-655	CLIP-seq
MIRT1309337	hsa-miR-656	CLIP-seq
MIRT1309338	hsa-miR-659	CLIP-seq
MIRT1309339	hsa-miR-676	CLIP-seq
MIRT1309340	hsa-miR-877	CLIP-seq
MIRT1309341	hsa-miR-9	CLIP-seq
MIRT1309342	hsa-miR-943	CLIP-seq
MIRT2091828	hsa-miR-1184	CLIP-seq
MIRT2091829	hsa-miR-1205	CLIP-seq
MIRT2091830	hsa-miR-128	CLIP-seq
MIRT2091831	hsa-miR-1297	CLIP-seq
MIRT2091832	hsa-miR-1303	CLIP-seq
MIRT2091833	hsa-miR-1305	CLIP-seq
MIRT1309247	hsa-miR-144	CLIP-seq
MIRT1309254	hsa-miR-2115	CLIP-seq
MIRT1309255	hsa-miR-224	CLIP-seq
MIRT2091834	hsa-miR-26a	CLIP-seq
MIRT2091835	hsa-miR-26b	CLIP-seq
MIRT2091836	hsa-miR-27a	CLIP-seq
MIRT2091837	hsa-miR-27b	CLIP-seq
MIRT2091838	hsa-miR-3115	CLIP-seq
MIRT1309268	hsa-miR-3136-5p	CLIP-seq
MIRT2091839	hsa-miR-3158-5p	CLIP-seq
MIRT2091840	hsa-miR-3920	CLIP-seq
MIRT2091841	hsa-miR-3940-5p	CLIP-seq
MIRT2091842	hsa-miR-4436b-5p	CLIP-seq
MIRT1309284	hsa-miR-4439	CLIP-seq
MIRT2091843	hsa-miR-4465	CLIP-seq
MIRT2091844	hsa-miR-4477a	CLIP-seq
MIRT2091845	hsa-miR-4507	CLIP-seq
MIRT1309289	hsa-miR-4517	CLIP-seq
MIRT2091846	hsa-miR-452	CLIP-seq
MIRT2091847	hsa-miR-4676-3p	CLIP-seq
MIRT2091848	hsa-miR-4686	CLIP-seq
MIRT2091849	hsa-miR-4691-5p	CLIP-seq
MIRT2091850	hsa-miR-4693-5p	CLIP-seq
MIRT2091851	hsa-miR-4698	CLIP-seq
MIRT2091852	hsa-miR-4699-3p	CLIP-seq
MIRT1309301	hsa-miR-4762-5p	CLIP-seq
MIRT2091853	hsa-miR-498	CLIP-seq
MIRT2091854	hsa-miR-499-3p	CLIP-seq
MIRT2091855	hsa-miR-499a-3p	CLIP-seq
MIRT2091856	hsa-miR-513a-5p	CLIP-seq
MIRT2091857	hsa-miR-539	CLIP-seq
MIRT2091858	hsa-miR-548g	CLIP-seq
MIRT1309326	hsa-miR-563	CLIP-seq
MIRT2091859	hsa-miR-586	CLIP-seq
MIRT1309338	hsa-miR-659	CLIP-seq
MIRT1309341	hsa-miR-9	CLIP-seq
MIRT1309342	hsa-miR-943	CLIP-seq
MIRT2316318	hsa-miR-1179	CLIP-seq
MIRT1309243	hsa-miR-1182	CLIP-seq
MIRT2316319	hsa-miR-1243	CLIP-seq
MIRT1309246	hsa-miR-1292	CLIP-seq
MIRT2316320	hsa-miR-1324	CLIP-seq
MIRT1309247	hsa-miR-144	CLIP-seq
MIRT1309248	hsa-miR-155	CLIP-seq
MIRT1309254	hsa-miR-2115	CLIP-seq
MIRT1309255	hsa-miR-224	CLIP-seq
MIRT1309258	hsa-miR-23a	CLIP-seq
MIRT1309259	hsa-miR-23b	CLIP-seq
MIRT2091836	hsa-miR-27a	CLIP-seq
MIRT2091837	hsa-miR-27b	CLIP-seq
MIRT1309260	hsa-miR-2909	CLIP-seq
MIRT1309268	hsa-miR-3136-5p	CLIP-seq
MIRT2316321	hsa-miR-3145-3p	CLIP-seq
MIRT2316322	hsa-miR-330-3p	CLIP-seq
MIRT2316323	hsa-miR-3613-5p	CLIP-seq
MIRT2316324	hsa-miR-3616-5p	CLIP-seq
MIRT2316325	hsa-miR-3647-5p	CLIP-seq
MIRT2316326	hsa-miR-3665	CLIP-seq
MIRT2316327	hsa-miR-3689a-5p	CLIP-seq
MIRT2316328	hsa-miR-3689b	CLIP-seq
MIRT2316329	hsa-miR-3689e	CLIP-seq
MIRT2316330	hsa-miR-3689f	CLIP-seq
MIRT2316331	hsa-miR-3909	CLIP-seq
MIRT1309280	hsa-miR-3913-3p	CLIP-seq
MIRT2316332	hsa-miR-3945	CLIP-seq
MIRT1309283	hsa-miR-412	CLIP-seq
MIRT2316333	hsa-miR-4431	CLIP-seq
MIRT2091842	hsa-miR-4436b-5p	CLIP-seq
MIRT1309284	hsa-miR-4439	CLIP-seq
MIRT1309285	hsa-miR-4457	CLIP-seq
MIRT1309286	hsa-miR-4471	CLIP-seq
MIRT2091844	hsa-miR-4477a	CLIP-seq
MIRT2316334	hsa-miR-4503	CLIP-seq
MIRT2316335	hsa-miR-450b-5p	CLIP-seq
MIRT1309289	hsa-miR-4517	CLIP-seq
MIRT1309295	hsa-miR-4667-5p	CLIP-seq
MIRT2091849	hsa-miR-4691-5p	CLIP-seq
MIRT1309297	hsa-miR-4700-5p	CLIP-seq
MIRT1309301	hsa-miR-4762-5p	CLIP-seq
MIRT2316336	hsa-miR-4795-5p	CLIP-seq
MIRT2316337	hsa-miR-486-3p	CLIP-seq
MIRT1309307	hsa-miR-489	CLIP-seq
MIRT1309309	hsa-miR-513b	CLIP-seq
MIRT1309310	hsa-miR-516a-3p	CLIP-seq
MIRT2316338	hsa-miR-520d-5p	CLIP-seq
MIRT2316339	hsa-miR-524-5p	CLIP-seq
MIRT1309326	hsa-miR-563	CLIP-seq
MIRT2316340	hsa-miR-573	CLIP-seq
MIRT2091859	hsa-miR-586	CLIP-seq
MIRT2316341	hsa-miR-601	CLIP-seq
MIRT1309333	hsa-miR-637	CLIP-seq
MIRT1309334	hsa-miR-640	CLIP-seq
MIRT1309338	hsa-miR-659	CLIP-seq
MIRT1309341	hsa-miR-9	CLIP-seq
MIRT1309342	hsa-miR-943	CLIP-seq
MIRT2091828	hsa-miR-1184	CLIP-seq
MIRT2091829	hsa-miR-1205	CLIP-seq
MIRT2091830	hsa-miR-128	CLIP-seq
MIRT1309247	hsa-miR-144	CLIP-seq
MIRT2091836	hsa-miR-27a	CLIP-seq
MIRT2091837	hsa-miR-27b	CLIP-seq
MIRT2091839	hsa-miR-3158-5p	CLIP-seq
MIRT2091846	hsa-miR-452	CLIP-seq
MIRT2091847	hsa-miR-4676-3p	CLIP-seq
MIRT2091848	hsa-miR-4686	CLIP-seq
MIRT2091850	hsa-miR-4693-5p	CLIP-seq
MIRT2091852	hsa-miR-4699-3p	CLIP-seq
MIRT2091833	hsa-miR-1305	CLIP-seq
MIRT2458315	hsa-miR-4446-5p	CLIP-seq
MIRT2458316	hsa-miR-4755-5p	CLIP-seq
MIRT2458317	hsa-miR-511	CLIP-seq
MIRT1309241	hsa-miR-1	CLIP-seq
MIRT2316318	hsa-miR-1179	CLIP-seq
MIRT2612463	hsa-miR-1183	CLIP-seq
MIRT2091828	hsa-miR-1184	CLIP-seq
MIRT2612464	hsa-miR-1193	CLIP-seq
MIRT2091829	hsa-miR-1205	CLIP-seq
MIRT2316319	hsa-miR-1243	CLIP-seq
MIRT2091830	hsa-miR-128	CLIP-seq
MIRT2091831	hsa-miR-1297	CLIP-seq
MIRT2091832	hsa-miR-1303	CLIP-seq
MIRT2091833	hsa-miR-1305	CLIP-seq
MIRT1309247	hsa-miR-144	CLIP-seq
MIRT2612465	hsa-miR-205	CLIP-seq
MIRT1309252	hsa-miR-206	CLIP-seq
MIRT2612466	hsa-miR-2113	CLIP-seq
MIRT1309257	hsa-miR-2355-3p	CLIP-seq
MIRT2091834	hsa-miR-26a	CLIP-seq
MIRT2091835	hsa-miR-26b	CLIP-seq
MIRT2091836	hsa-miR-27a	CLIP-seq
MIRT2091837	hsa-miR-27b	CLIP-seq
MIRT2091838	hsa-miR-3115	CLIP-seq
MIRT1309264	hsa-miR-3120-3p	CLIP-seq
MIRT1309270	hsa-miR-3148	CLIP-seq
MIRT1309271	hsa-miR-3150a-5p	CLIP-seq
MIRT1309272	hsa-miR-3150b-5p	CLIP-seq
MIRT2091839	hsa-miR-3158-5p	CLIP-seq
MIRT2612467	hsa-miR-3163	CLIP-seq
MIRT2612468	hsa-miR-3171	CLIP-seq
MIRT1309274	hsa-miR-331-3p	CLIP-seq
MIRT2612469	hsa-miR-340	CLIP-seq
MIRT2316324	hsa-miR-3616-5p	CLIP-seq
MIRT2612470	hsa-miR-3646	CLIP-seq
MIRT2316325	hsa-miR-3647-5p	CLIP-seq
MIRT2091840	hsa-miR-3920	CLIP-seq
MIRT2091841	hsa-miR-3940-5p	CLIP-seq
MIRT2612471	hsa-miR-410	CLIP-seq
MIRT2612472	hsa-miR-4270	CLIP-seq
MIRT2612473	hsa-miR-4272	CLIP-seq
MIRT2612474	hsa-miR-4274	CLIP-seq
MIRT2612475	hsa-miR-4282	CLIP-seq
MIRT2316333	hsa-miR-4431	CLIP-seq
MIRT2612476	hsa-miR-4441	CLIP-seq
MIRT2091843	hsa-miR-4465	CLIP-seq
MIRT2091844	hsa-miR-4477a	CLIP-seq
MIRT1309287	hsa-miR-4477b	CLIP-seq
MIRT1309288	hsa-miR-4496	CLIP-seq
MIRT2091845	hsa-miR-4507	CLIP-seq
MIRT2316335	hsa-miR-450b-5p	CLIP-seq
MIRT2091846	hsa-miR-452	CLIP-seq
MIRT2612477	hsa-miR-4639-3p	CLIP-seq
MIRT2612478	hsa-miR-4645-3p	CLIP-seq
MIRT1309293	hsa-miR-4646-3p	CLIP-seq
MIRT2612479	hsa-miR-4652-3p	CLIP-seq
MIRT1309295	hsa-miR-4667-5p	CLIP-seq
MIRT2091847	hsa-miR-4676-3p	CLIP-seq
MIRT2091848	hsa-miR-4686	CLIP-seq
MIRT2091850	hsa-miR-4693-5p	CLIP-seq
MIRT2091851	hsa-miR-4698	CLIP-seq
MIRT2091852	hsa-miR-4699-3p	CLIP-seq
MIRT1309297	hsa-miR-4700-5p	CLIP-seq
MIRT2612480	hsa-miR-4709-5p	CLIP-seq
MIRT1309300	hsa-miR-4732-3p	CLIP-seq
MIRT1309301	hsa-miR-4762-5p	CLIP-seq
MIRT1309302	hsa-miR-4764-3p	CLIP-seq
MIRT2612481	hsa-miR-4773	CLIP-seq
MIRT2612482	hsa-miR-4778-5p	CLIP-seq
MIRT2316336	hsa-miR-4795-5p	CLIP-seq
MIRT2612483	hsa-miR-4799-5p	CLIP-seq
MIRT2316337	hsa-miR-486-3p	CLIP-seq
MIRT2091853	hsa-miR-498	CLIP-seq
MIRT2091854	hsa-miR-499-3p	CLIP-seq
MIRT2091855	hsa-miR-499a-3p	CLIP-seq
MIRT2091857	hsa-miR-539	CLIP-seq
MIRT2091858	hsa-miR-548g	CLIP-seq
MIRT2612484	hsa-miR-550a	CLIP-seq
MIRT1309326	hsa-miR-563	CLIP-seq
MIRT2316340	hsa-miR-573	CLIP-seq
MIRT1309327	hsa-miR-577	CLIP-seq
MIRT2091859	hsa-miR-586	CLIP-seq
MIRT2316341	hsa-miR-601	CLIP-seq
MIRT1309330	hsa-miR-613	CLIP-seq
MIRT2612485	hsa-miR-630	CLIP-seq
MIRT1309333	hsa-miR-637	CLIP-seq
MIRT1309339	hsa-miR-676	CLIP-seq
MIRT2316318	hsa-miR-1179	CLIP-seq
MIRT2612463	hsa-miR-1183	CLIP-seq
MIRT2091828	hsa-miR-1184	CLIP-seq
MIRT2612464	hsa-miR-1193	CLIP-seq
MIRT2091829	hsa-miR-1205	CLIP-seq
MIRT2091830	hsa-miR-128	CLIP-seq
MIRT2091831	hsa-miR-1297	CLIP-seq
MIRT2091833	hsa-miR-1305	CLIP-seq
MIRT1309247	hsa-miR-144	CLIP-seq
MIRT2612465	hsa-miR-205	CLIP-seq
MIRT2612466	hsa-miR-2113	CLIP-seq
MIRT2091834	hsa-miR-26a	CLIP-seq
MIRT2091835	hsa-miR-26b	CLIP-seq
MIRT2091836	hsa-miR-27a	CLIP-seq
MIRT2091837	hsa-miR-27b	CLIP-seq
MIRT2091838	hsa-miR-3115	CLIP-seq
MIRT1309264	hsa-miR-3120-3p	CLIP-seq
MIRT1309270	hsa-miR-3148	CLIP-seq
MIRT2091839	hsa-miR-3158-5p	CLIP-seq
MIRT2612467	hsa-miR-3163	CLIP-seq
MIRT2612468	hsa-miR-3171	CLIP-seq
MIRT1309274	hsa-miR-331-3p	CLIP-seq
MIRT2612469	hsa-miR-340	CLIP-seq
MIRT2316324	hsa-miR-3616-5p	CLIP-seq
MIRT2612470	hsa-miR-3646	CLIP-seq
MIRT2316325	hsa-miR-3647-5p	CLIP-seq
MIRT2091840	hsa-miR-3920	CLIP-seq
MIRT2091841	hsa-miR-3940-5p	CLIP-seq
MIRT2612471	hsa-miR-410	CLIP-seq
MIRT2612472	hsa-miR-4270	CLIP-seq
MIRT2612473	hsa-miR-4272	CLIP-seq
MIRT2612474	hsa-miR-4274	CLIP-seq
MIRT2612475	hsa-miR-4282	CLIP-seq
MIRT2316333	hsa-miR-4431	CLIP-seq
MIRT2612476	hsa-miR-4441	CLIP-seq
MIRT2091843	hsa-miR-4465	CLIP-seq
MIRT2091844	hsa-miR-4477a	CLIP-seq
MIRT1309287	hsa-miR-4477b	CLIP-seq
MIRT1309288	hsa-miR-4496	CLIP-seq
MIRT2091845	hsa-miR-4507	CLIP-seq
MIRT2091846	hsa-miR-452	CLIP-seq
MIRT2612477	hsa-miR-4639-3p	CLIP-seq
MIRT2612478	hsa-miR-4645-3p	CLIP-seq
MIRT2612479	hsa-miR-4652-3p	CLIP-seq
MIRT2091847	hsa-miR-4676-3p	CLIP-seq
MIRT2091848	hsa-miR-4686	CLIP-seq
MIRT2091850	hsa-miR-4693-5p	CLIP-seq
MIRT2091851	hsa-miR-4698	CLIP-seq
MIRT2091852	hsa-miR-4699-3p	CLIP-seq
MIRT2612480	hsa-miR-4709-5p	CLIP-seq
MIRT1309300	hsa-miR-4732-3p	CLIP-seq
MIRT1309301	hsa-miR-4762-5p	CLIP-seq
MIRT1309302	hsa-miR-4764-3p	CLIP-seq
MIRT2612481	hsa-miR-4773	CLIP-seq
MIRT2612482	hsa-miR-4778-5p	CLIP-seq
MIRT2316336	hsa-miR-4795-5p	CLIP-seq
MIRT2612483	hsa-miR-4799-5p	CLIP-seq
MIRT2091853	hsa-miR-498	CLIP-seq
MIRT2091854	hsa-miR-499-3p	CLIP-seq
MIRT2091855	hsa-miR-499a-3p	CLIP-seq
MIRT2091858	hsa-miR-548g	CLIP-seq
MIRT2612484	hsa-miR-550a	CLIP-seq
MIRT1309326	hsa-miR-563	CLIP-seq
MIRT2316340	hsa-miR-573	CLIP-seq
MIRT1309327	hsa-miR-577	CLIP-seq
MIRT2316341	hsa-miR-601	CLIP-seq
MIRT2612485	hsa-miR-630	CLIP-seq

Transcription factors

Transcription factor	Regulation	Reference
XPC	Repression	23751493

Gene ontology (GO)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000209	Process	Protein polyubiquitination	IEA
GO:0005515	Function	Protein binding	IPI	16601693, 19549727, 19690564, 20936779, 21516116, 25260751, 25416956, 29892012, 31515488, 32707033, 32814053, 33961781
GO:0005634	Component	Nucleus	IBA
GO:0005634	Component	Nucleus	IEA
GO:0005654	Component	Nucleoplasm	IDA
GO:0005654	Component	Nucleoplasm	IEA
GO:0005654	Component	Nucleoplasm	TAS
GO:0005737	Component	Cytoplasm	IBA
GO:0005737	Component	Cytoplasm	IEA
GO:0005829	Component	Cytosol	IDA
GO:0006281	Process	DNA repair	IEA
GO:0006511	Process	Ubiquitin-dependent protein catabolic process	IBA
GO:0006511	Process	Ubiquitin-dependent protein catabolic process	IEA
GO:0006974	Process	DNA damage response	IEA
GO:0007389	Process	Pattern specification process	IEA
GO:0008270	Function	Zinc ion binding	IEA
GO:0016567	Process	Protein ubiquitination	IEA
GO:0016567	Process	Protein ubiquitination	IMP	16601693
GO:0016605	Component	PML body	IEA
GO:0016740	Function	Transferase activity	IEA
GO:0030511	Process	Positive regulation of transforming growth factor beta receptor signaling pathway	IBA
GO:0030511	Process	Positive regulation of transforming growth factor beta receptor signaling pathway	IEA
GO:0031398	Process	Positive regulation of protein ubiquitination	IEA
GO:0032184	Function	SUMO polymer binding	IBA
GO:0032184	Function	SUMO polymer binding	IDA	23086935
GO:0032991	Component	Protein-containing complex	IEA
GO:0046332	Function	SMAD binding	IBA
GO:0046872	Function	Metal ion binding	IEA
GO:0061630	Function	Ubiquitin protein ligase activity	IBA
GO:0061630	Function	Ubiquitin protein ligase activity	IEA
GO:0061630	Function	Ubiquitin protein ligase activity	IMP	16601693
GO:0061630	Function	Ubiquitin protein ligase activity	TAS
GO:0070911	Process	Global genome nucleotide-excision repair	TAS

Other IDs

• MIM: 605840
• HGNC: 17384
• e!Ensembl: ENSG00000157450

Protein

• UniProt ID: Q6ZNA4
• Protein name: E3 ubiquitin-protein ligase Arkadia (EC 2.3.2.27) (RING finger protein 111) (hRNF111) (RING-type E3 ubiquitin transferase Arkadia)
• Protein function: E3 ubiquitin-protein ligase (PubMed:26656854). Required for mesoderm patterning during embryonic development (By similarity). Acts as an enhancer of the transcriptional responses of the SMAD2/SMAD3 effectors, which are activated downstream of BM
• PDB: 2KIZ, 5LG0, 5LG7, 7P2K
• Family and domains:

  Pfam

  Accession	ID	Position in sequence	Description	Type
  PF15303	RNF111_N	18 → 292	E3 ubiquitin-protein ligase Arkadia N-terminus	Family
  PF13639	zf-RING_2	940 → 983	Ring finger domain	Domain

• Tissue specificity: TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:14657019}.
• Sequence:

  MSQWTPEYNELYTLKVDMKSEIPSDAPKTQESLKGILLHPEPIGAAKSFPAGVEMINSKV
  GNEFSHLCDDSQKQEKEMNGNQQEQEKSLVVRKKRKSQQAGPSYVQNCVKENQGILGLRQ
  HLGTPSDEDNDSSFSDCLSSPSSSLHFGDSDTVTSDEDKEVSVRHSQTILNAKSRSHSAR
  SHKWPRTETESVSGLLMKRPCLHGSSLRRLPCRKRFVKNNSSQRTQKQKERILMQRKKRE
  VLARRKYALLPSSSSSSENDLSSESSSSSSTEGEEDLFVSASENHQNNPAVPSGSIDEDV
  VVIEASSTPQVTANEEINVTSTDSEVEIVTVGESYRSRSTLGHSRSHWSQGSSSHASRPQ
  EPRNRSRISTVIQPLRQNAAEVVDLTVDEDEPTVVPTTSARMESQATSASINNSNPSTSE
  QASDTASAVTSSQPSTVSETSATLTSNSTTGTSIGDDSRRTTSSAVTETGPPAMPRLPSC
  CPQHSPCGGSSQNHHALGHPHTSCFQQHGHHFQHHHHHHHTPHPAVPVSPSFSDPACPVE
  RPPQVQAPCGANSSSGTSYHEQQALPVDLSNSGIRSHGSGSFHGASAFDPCCPVSSSRAA
  IFGHQAAAAAPSQPLSSIDGYGSSMVAQPQPQPPPQPSLSSCRHYMPPPYASLTRPLHHQ
  ASACPHSHGNPPPQTQPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPPPTHLASTAAPI
  PQHLPPTHQPISHHIPATAPPAQRLHPHEVMQRMEVQRRRMMQHPTRAHERPPPHPHRMH
  PNYGHGHHIHVPQTMSSHPRQAPERSAWELGIEAGVTAATYTPGALHPHLAHYHAPPRLH
  HLQLGALPLMVPDMAGYPHIRYISSGLDGTSFRGPFRGNFEELIHLEERLGNVNRGASQG
  TIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGTEEDTEEKCTICLSILEEGEDVRRLPC
  MHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES

• Sequence length: 994

Pathways

Reactome:

SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
Formation of Incision Complex in GG-NER
Antigen processing: Ubiquitination & Proteasome degradation