Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
547
Gene name Gene Name - the full gene name approved by the HGNC.
Kinesin family member 1A
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
KIF1A
Synonyms (NCBI Gene) Gene synonyms aliases
ATSV, C2orf20, HSN2C, MRD9, NESCAVS, SPG30, SPG30A, SPG30B, UNC104
Chromosome Chromosome number
2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
2q37.3
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a member of the kinesin family and functions as an anterograde motor protein that transports membranous organelles along axonal microtubules. Mutations at this locus have been associated with spastic paraplegia-30 and h
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs10594016 TCCTCCTCCTCCTCCTCC>-,TCC,TCCTCC,TCCTCCTCC,TCCTCCTCCTCC,TCCTCCTCCTCCTCC,TCCTCCTCCTCCTCCTCCTCC,TCCTCCTCCTCCTCCTCCTCCTCC,TCCTCCTCCTCCTCCTCCTCCTCCTCC Benign, conflicting-interpretations-of-pathogenicity, likely-benign Intron variant, inframe insertion, inframe deletion, coding sequence variant
rs140783695 G>C Benign, conflicting-interpretations-of-pathogenicity, uncertain-significance, likely-benign Coding sequence variant, synonymous variant
rs141441058 G>A Conflicting-interpretations-of-pathogenicity, uncertain-significance, likely-benign Coding sequence variant, missense variant
rs143037290 G>A Conflicting-interpretations-of-pathogenicity, likely-benign, benign-likely-benign Coding sequence variant, missense variant
rs143815273 C>T Benign, conflicting-interpretations-of-pathogenicity, uncertain-significance, likely-benign Coding sequence variant, synonymous variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT051327 hsa-miR-15a-5p CLASH 23622248
MIRT051041 hsa-miR-17-5p CLASH 23622248
MIRT049281 hsa-miR-92a-3p CLASH 23622248
MIRT045783 hsa-miR-9-5p CLASH 23622248
MIRT045431 hsa-miR-149-5p CLASH 23622248
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0003774 Function Cytoskeletal motor activity IEA
GO:0003774 Function Cytoskeletal motor activity TAS 7539720
GO:0003777 Function Microtubule motor activity IEA
GO:0005515 Function Protein binding IPI 32814053
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
601255 888 ENSG00000130294
Protein
UniProt ID Q12756
Protein name Kinesin-like protein KIF1A (EC 5.6.1.3) (Axonal transporter of synaptic vesicles) (Microtubule-based motor KIF1A) (Unc-104- and KIF1A-related protein) (hUnc-104)
Protein function Kinesin motor with a plus-end-directed microtubule motor activity (By similarity). It is required for anterograde axonal transport of synaptic vesicle precursors (PubMed:33880452). Also required for neuronal dense core vesicles (DCVs) transport
PDB 4EGX , 4EJQ , 4UXO , 4UXP , 4UXR , 4UXS , 8UTN , 8UTO , 8UTP , 8UTQ , 8UTR , 8UTS , 8UTT , 8UTU , 8UTV , 8UTW , 8UTY
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00225 Kinesin 11 354 Kinesin motor domain Domain
PF16183 Kinesin_assoc 358 515 Kinesin-associated Family
PF00498 FHA 516 587 FHA domain Family
PF12423 KIF1B 805 851 Kinesin protein 1B Family
PF12473 DUF3694 1149 1296 Kinesin protein Family
PF00169 PH 1576 1673 PH domain Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in neurons. {ECO:0000269|PubMed:21376300}.
Sequence
MAGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHT
SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIP
QLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVED
LSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEK
VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKK
TDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI
RCNAVI
NEDPNNKLIRELKDEVTRLRDLLYAQGLGDITDMTNALVGMSPSSSLSALSSRAASVSSL
HERILFAPGSEEAIERLKETEKIIAELNETWEEKLRRTEAIRMEREALLAEMGVAMREDG
GTLGVFSPKKTPHLVNLNEDPLMSECLLYYIKDGI
TRVGREDGERRQDIVLSGHFIKEEH
CVFRSDSRGGSEAVVTLEPCEGADTYVNGKKVTEPSILRSGNRIIMG
KSHVFRFNHPEQA
RQERERTPCAETPAEPVDWAFAQRELLEKQGIDMKQEMEQRLQELEDQYRREREEATYLL
EQQRLDYESKLEALQKQMDSRYYPEVNEEEEEPEDEVQWTERECELALWAFRKWKWYQFT
SLRDLLWGNAIFLKEANAISVELKKKVQFQFVLLTDTLYSPLPPDLLPPEAAKDRETRPF
PRTIVAVEVQDQKNGATHYWTLEKLRQRLDLMREMYDRAAEVPSSVIEDCDNVVTGGDPF
YDRFPWFRLVG
RAFVYLSNLLYPVPLVHRVAIVSEKGEVKGFLRVAVQAISADEEAPDYG
SGVRQSGTAKISFDDQHFEKFQSESCPVVGMSRSGTSQEELRIVEGQGQGADVGPSADEV
NNNTCSAVPPEGLLLDSSEKAALDGPLDAALDHLRLGNTFTFRVTVLQASSISAEYADIF
CQFNFIHRHDEAFSTEPLKNTGRGPPLGFYHVQNIAVEVTKSFIEYIKSQPIVFEVFGHY
QQHPFPPLCKDVLSPLRPSRRHFPRVMPLSKPVPATKLSTLTRPCPGPCHCKYDLLVYFE
ICELEANGDYIPAVVDHRGGMPCMGTFLLHQGIQRRITVTLLHETGSHIRWKEVRELVVG
RIRNTPETDESLIDPNILSLNILSSGYIHPAQDDRTFYQFEAAWDSSMHNSLLLNRVTPY
REKIYMTLSAYIEMENCTQPAVVTKDFCMVFYSRDA
KLPASRSIRNLFGSGSLRASESNR
VTGVYELSLCHVADAGSPGMQRRRRRVLDTSVAYVRGEENLAGWRPRSDSLILDHQWELE
KLSLLQEVEKTRHYLLLREKLETAQRPVPEALSPAFSEDSESHGSSSASSPLSAEGRPSP
LEAPNERQRELAVKCLRLLTHTFNREYTHSHVCVSASESKLSEMSVTLLRDPSMSPLGVA
TLTPSSTCPSLVEGRYGATDLRTPQPCSRPASPEPELLPEADSKKLPSPARATETDKEPQ
RLLVPDIQEIRVSPIVSKKGYLHFLEPHTSGWARRFVVVRRPYAYMYNSDKDTVERFVLN
LATAQVEYSEDQQAMLKTPNTFAVCTEHRGILLQAASDKDMHDWLYAFNPLLA
GTIRSKL
SRRRSAQMRV
Sequence length 1690
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Motor proteins   COPI-dependent Golgi-to-ER retrograde traffic
Kinesins
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Hereditary motor and sensory neuropathy Neuropathy, hereditary sensory, type 2C rs587778791, rs587778798 N/A
Hereditary sensory and autonomic neuropathy Neuropathy, hereditary sensory and autonomic, type 2A rs587778791, rs587778798, rs672601370 N/A
Hereditary spastic paraplegia Hereditary spastic paraplegia 30, Hereditary spastic paraplegia rs1553638086, rs672601362, rs548204329, rs672601369, rs786200949, rs797045655, rs1575654528, rs387907259, rs672601367, rs1131690804, rs1575624664, rs886041692, rs1575631836, rs672601365, rs797045164
View all (8 more)
N/A
Mental retardation Intellectual disability, autosomal dominant 9 rs797045655, rs1064793161, rs1553638086, rs387906799, rs2054280202, rs672601371, rs1064794935, rs672601367, rs1575654528, rs869312711, rs1131690804, rs876661168, rs672601368, rs879253888, rs672601366
View all (12 more)
N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Charcot-Marie-Tooth Disease Charcot-Marie-Tooth disease type 2 N/A N/A ClinVar
Coronary Heart Disease Coronary heart disease N/A N/A GWAS
Insomnia Insomnia N/A N/A GWAS
Psoriasis Psoriasis N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Agenesis of Corpus Callosum Associate 28970574
Alcoholic Neuropathy Associate 28834584
Alopecia Associate 32758128
Amyotrophic Lateral Sclerosis Associate 30778698, 37849306
Angina Unstable Associate 31796088
Anodontia Associate 39519162
Ataxia Associate 36233161
Atrophy Associate 36305856
Autism Spectrum Disorder Associate 28834584
Autistic Disorder Associate 31813911