Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.	54680
Gene name Gene Name - the full gene name approved by the HGNC.	Zinc finger HIT-type containing 6
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.	ZNHIT6
Synonyms (NCBI Gene) Gene synonyms aliases	BCD1, C1orf181, NY-BR-75
Chromosome Chromosome number	1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.	1p22.3

Show/Hide all(236)

miRTarBase ID	miRNA	Experiments	Reference
MIRT022197	hsa-miR-124-3p	Microarray	18668037
MIRT045407	hsa-miR-149-5p	CLASH	23622248
MIRT686180	hsa-miR-4677-3p	HITS-CLIP	23313552
MIRT686179	hsa-miR-6889-3p	HITS-CLIP	23313552
MIRT686178	hsa-miR-6807-5p	HITS-CLIP	23313552
MIRT686177	hsa-miR-5089-5p	HITS-CLIP	23313552
MIRT686176	hsa-miR-550b-2-5p	HITS-CLIP	23313552
MIRT441516	hsa-miR-410-3p	PAR-CLIP	22100165
MIRT441515	hsa-miR-339-5p	PAR-CLIP	22100165
MIRT441514	hsa-miR-670-5p	PAR-CLIP	22100165
MIRT441516	hsa-miR-410-3p	PAR-CLIP	22100165
MIRT441515	hsa-miR-339-5p	PAR-CLIP	22100165
MIRT441514	hsa-miR-670-5p	PAR-CLIP	22100165
MIRT686180	hsa-miR-4677-3p	HITS-CLIP	23313552
MIRT686179	hsa-miR-6889-3p	HITS-CLIP	23313552
MIRT686178	hsa-miR-6807-5p	HITS-CLIP	23313552
MIRT686177	hsa-miR-5089-5p	HITS-CLIP	23313552
MIRT686176	hsa-miR-550b-2-5p	HITS-CLIP	23313552
MIRT441516	hsa-miR-410-3p	PAR-CLIP	22100165
MIRT441515	hsa-miR-339-5p	PAR-CLIP	22100165
MIRT441514	hsa-miR-670-5p	PAR-CLIP	22100165
MIRT441516	hsa-miR-410-3p	PAR-CLIP	22100165
MIRT441515	hsa-miR-339-5p	PAR-CLIP	22100165
MIRT441514	hsa-miR-670-5p	PAR-CLIP	22100165
MIRT1542954	hsa-miR-1	CLIP-seq
MIRT1542955	hsa-miR-1208	CLIP-seq
MIRT1542956	hsa-miR-1279	CLIP-seq
MIRT1542957	hsa-miR-128	CLIP-seq
MIRT1542958	hsa-miR-15a	CLIP-seq
MIRT1542959	hsa-miR-15b	CLIP-seq
MIRT1542960	hsa-miR-16	CLIP-seq
MIRT1542961	hsa-miR-195	CLIP-seq
MIRT1542962	hsa-miR-203	CLIP-seq
MIRT1542963	hsa-miR-206	CLIP-seq
MIRT1542964	hsa-miR-25	CLIP-seq
MIRT1542965	hsa-miR-27a	CLIP-seq
MIRT1542966	hsa-miR-27b	CLIP-seq
MIRT1542967	hsa-miR-3145-5p	CLIP-seq
MIRT1542968	hsa-miR-3152-3p	CLIP-seq
MIRT1542969	hsa-miR-3163	CLIP-seq
MIRT1542970	hsa-miR-32	CLIP-seq
MIRT1542971	hsa-miR-323b-3p	CLIP-seq
MIRT1542972	hsa-miR-330-3p	CLIP-seq
MIRT1542973	hsa-miR-34b	CLIP-seq
MIRT1542974	hsa-miR-3545-3p	CLIP-seq
MIRT1542975	hsa-miR-363	CLIP-seq
MIRT1542976	hsa-miR-3653	CLIP-seq
MIRT1542977	hsa-miR-3658	CLIP-seq
MIRT1542978	hsa-miR-367	CLIP-seq
MIRT1542979	hsa-miR-3942-5p	CLIP-seq
MIRT1542980	hsa-miR-410	CLIP-seq
MIRT1542981	hsa-miR-424	CLIP-seq
MIRT1542982	hsa-miR-4282	CLIP-seq
MIRT1542983	hsa-miR-4417	CLIP-seq
MIRT1542984	hsa-miR-4481	CLIP-seq
MIRT1542985	hsa-miR-4693-3p	CLIP-seq
MIRT1542986	hsa-miR-4703-5p	CLIP-seq
MIRT1542987	hsa-miR-4712-3p	CLIP-seq
MIRT1542988	hsa-miR-4745-5p	CLIP-seq
MIRT1542989	hsa-miR-4753-3p	CLIP-seq
MIRT1542990	hsa-miR-497	CLIP-seq
MIRT1542991	hsa-miR-513a-5p	CLIP-seq
MIRT1542992	hsa-miR-582-5p	CLIP-seq
MIRT1542993	hsa-miR-600	CLIP-seq
MIRT1542994	hsa-miR-613	CLIP-seq
MIRT1542995	hsa-miR-888	CLIP-seq
MIRT1542996	hsa-miR-92a	CLIP-seq
MIRT1542997	hsa-miR-92b	CLIP-seq
MIRT1542998	hsa-miR-938	CLIP-seq
MIRT1542999	hsa-miR-942	CLIP-seq
MIRT1542955	hsa-miR-1208	CLIP-seq
MIRT1543000	hsa-miR-129-5p	CLIP-seq
MIRT1543001	hsa-miR-1304	CLIP-seq
MIRT1543002	hsa-miR-1827	CLIP-seq
MIRT1542962	hsa-miR-203	CLIP-seq
MIRT1543003	hsa-miR-22	CLIP-seq
MIRT1543004	hsa-miR-3157-5p	CLIP-seq
MIRT1542969	hsa-miR-3163	CLIP-seq
MIRT1543005	hsa-miR-340	CLIP-seq
MIRT1542973	hsa-miR-34b	CLIP-seq
MIRT1543006	hsa-miR-4312	CLIP-seq
MIRT1543007	hsa-miR-452	CLIP-seq
MIRT1543008	hsa-miR-4676-3p	CLIP-seq
MIRT1543009	hsa-miR-4769-3p	CLIP-seq
MIRT1543010	hsa-miR-4778-5p	CLIP-seq
MIRT1543011	hsa-miR-4797-5p	CLIP-seq
MIRT1543012	hsa-miR-548g	CLIP-seq
MIRT1543013	hsa-miR-558	CLIP-seq
MIRT2163796	hsa-miR-105	CLIP-seq
MIRT1542956	hsa-miR-1279	CLIP-seq
MIRT2163797	hsa-miR-153	CLIP-seq
MIRT2163798	hsa-miR-155	CLIP-seq
MIRT2163799	hsa-miR-2116	CLIP-seq
MIRT1542967	hsa-miR-3145-5p	CLIP-seq
MIRT1542968	hsa-miR-3152-3p	CLIP-seq
MIRT1542971	hsa-miR-323b-3p	CLIP-seq
MIRT2163800	hsa-miR-3614-5p	CLIP-seq
MIRT2163801	hsa-miR-3672	CLIP-seq
MIRT2163802	hsa-miR-448	CLIP-seq
MIRT2163803	hsa-miR-4512	CLIP-seq
MIRT2163804	hsa-miR-4517	CLIP-seq
MIRT2163805	hsa-miR-4645-5p	CLIP-seq
MIRT2163806	hsa-miR-4673	CLIP-seq
MIRT2163807	hsa-miR-4728-3p	CLIP-seq
MIRT2163808	hsa-miR-4733-5p	CLIP-seq
MIRT1543011	hsa-miR-4797-5p	CLIP-seq
MIRT2163809	hsa-miR-515-5p	CLIP-seq
MIRT2163810	hsa-miR-548ac	CLIP-seq
MIRT2163811	hsa-miR-548ae	CLIP-seq
MIRT2163812	hsa-miR-548aj	CLIP-seq
MIRT2163813	hsa-miR-548am	CLIP-seq
MIRT2163814	hsa-miR-548d-3p	CLIP-seq
MIRT2163815	hsa-miR-548x	CLIP-seq
MIRT2163816	hsa-miR-548z	CLIP-seq
MIRT2163817	hsa-miR-668	CLIP-seq
MIRT2163818	hsa-miR-889	CLIP-seq
MIRT2163819	hsa-miR-935	CLIP-seq
MIRT2382997	hsa-miR-1184	CLIP-seq
MIRT2382998	hsa-miR-1205	CLIP-seq
MIRT1542955	hsa-miR-1208	CLIP-seq
MIRT2382999	hsa-miR-1237	CLIP-seq
MIRT2383000	hsa-miR-1272	CLIP-seq
MIRT2383001	hsa-miR-144	CLIP-seq
MIRT2383002	hsa-miR-2467-3p	CLIP-seq
MIRT2383003	hsa-miR-3147	CLIP-seq
MIRT2383004	hsa-miR-3149	CLIP-seq
MIRT1543004	hsa-miR-3157-5p	CLIP-seq
MIRT2383005	hsa-miR-3158-5p	CLIP-seq
MIRT1542969	hsa-miR-3163	CLIP-seq
MIRT2383006	hsa-miR-3678-3p	CLIP-seq
MIRT2383007	hsa-miR-3689a-3p	CLIP-seq
MIRT2383008	hsa-miR-3689c	CLIP-seq
MIRT2383009	hsa-miR-3924	CLIP-seq
MIRT2383010	hsa-miR-3938	CLIP-seq
MIRT2383011	hsa-miR-4252	CLIP-seq
MIRT2383012	hsa-miR-4317	CLIP-seq
MIRT2383013	hsa-miR-4420	CLIP-seq
MIRT2383014	hsa-miR-4425	CLIP-seq
MIRT2383015	hsa-miR-4690-3p	CLIP-seq
MIRT2383016	hsa-miR-4691-3p	CLIP-seq
MIRT2383017	hsa-miR-4694-3p	CLIP-seq
MIRT2383018	hsa-miR-4705	CLIP-seq
MIRT2383019	hsa-miR-4715-3p	CLIP-seq
MIRT2383020	hsa-miR-4722-3p	CLIP-seq
MIRT2383021	hsa-miR-4728-5p	CLIP-seq
MIRT2383022	hsa-miR-4735-5p	CLIP-seq
MIRT2383023	hsa-miR-4763-5p	CLIP-seq
MIRT2383024	hsa-miR-4775	CLIP-seq
MIRT2383025	hsa-miR-4794	CLIP-seq
MIRT2383026	hsa-miR-485-5p	CLIP-seq
MIRT2383027	hsa-miR-488	CLIP-seq
MIRT2383028	hsa-miR-522	CLIP-seq
MIRT2383029	hsa-miR-544	CLIP-seq
MIRT2383030	hsa-miR-548a-3p	CLIP-seq
MIRT2383031	hsa-miR-548e	CLIP-seq
MIRT2383032	hsa-miR-548f	CLIP-seq
MIRT1543012	hsa-miR-548g	CLIP-seq
MIRT2383033	hsa-miR-550a	CLIP-seq
MIRT2383034	hsa-miR-582-3p	CLIP-seq
MIRT2383035	hsa-miR-590-3p	CLIP-seq
MIRT2383036	hsa-miR-660	CLIP-seq
MIRT1542968	hsa-miR-3152-3p	CLIP-seq
MIRT2673507	hsa-miR-10a	CLIP-seq
MIRT2673508	hsa-miR-10b	CLIP-seq
MIRT2673509	hsa-miR-1200	CLIP-seq
MIRT2673510	hsa-miR-1276	CLIP-seq
MIRT2673511	hsa-miR-1303	CLIP-seq
MIRT2673512	hsa-miR-1305	CLIP-seq
MIRT1542967	hsa-miR-3145-5p	CLIP-seq
MIRT2383004	hsa-miR-3149	CLIP-seq
MIRT2673513	hsa-miR-3613-3p	CLIP-seq
MIRT2673514	hsa-miR-3667-5p	CLIP-seq
MIRT2673515	hsa-miR-3688-3p	CLIP-seq
MIRT2673516	hsa-miR-371-5p	CLIP-seq
MIRT2673517	hsa-miR-371b-5p	CLIP-seq
MIRT2673518	hsa-miR-411	CLIP-seq
MIRT2673519	hsa-miR-4325	CLIP-seq
MIRT2673520	hsa-miR-4328	CLIP-seq
MIRT2673521	hsa-miR-4421	CLIP-seq
MIRT2673522	hsa-miR-4486	CLIP-seq
MIRT2673523	hsa-miR-4503	CLIP-seq
MIRT2673524	hsa-miR-4649-5p	CLIP-seq
MIRT2673525	hsa-miR-4684-5p	CLIP-seq
MIRT2383019	hsa-miR-4715-3p	CLIP-seq
MIRT2383020	hsa-miR-4722-3p	CLIP-seq
MIRT2163808	hsa-miR-4733-5p	CLIP-seq
MIRT2383022	hsa-miR-4735-5p	CLIP-seq
MIRT2383023	hsa-miR-4763-5p	CLIP-seq
MIRT2383024	hsa-miR-4775	CLIP-seq
MIRT2673526	hsa-miR-4786-5p	CLIP-seq
MIRT2383025	hsa-miR-4794	CLIP-seq
MIRT2383033	hsa-miR-550a	CLIP-seq
MIRT2673527	hsa-miR-561	CLIP-seq
MIRT2383035	hsa-miR-590-3p	CLIP-seq
MIRT2673528	hsa-miR-593	CLIP-seq
MIRT2673529	hsa-miR-603	CLIP-seq
MIRT2673530	hsa-miR-607	CLIP-seq
MIRT2673531	hsa-miR-661	CLIP-seq
MIRT2673532	hsa-miR-769-5p	CLIP-seq
MIRT2673507	hsa-miR-10a	CLIP-seq
MIRT2673508	hsa-miR-10b	CLIP-seq
MIRT2673510	hsa-miR-1276	CLIP-seq
MIRT2696408	hsa-miR-1294	CLIP-seq
MIRT2696409	hsa-miR-1468	CLIP-seq
MIRT2696410	hsa-miR-1914	CLIP-seq
MIRT2696411	hsa-miR-1976	CLIP-seq
MIRT2696412	hsa-miR-3065-5p	CLIP-seq
MIRT1542967	hsa-miR-3145-5p	CLIP-seq
MIRT2696413	hsa-miR-3168	CLIP-seq
MIRT2696414	hsa-miR-3174	CLIP-seq
MIRT2696415	hsa-miR-3591-5p	CLIP-seq
MIRT2696416	hsa-miR-3606	CLIP-seq
MIRT2673513	hsa-miR-3613-3p	CLIP-seq
MIRT2696417	hsa-miR-3613-5p	CLIP-seq
MIRT2673514	hsa-miR-3667-5p	CLIP-seq
MIRT2673516	hsa-miR-371-5p	CLIP-seq
MIRT2673517	hsa-miR-371b-5p	CLIP-seq
MIRT2696418	hsa-miR-4279	CLIP-seq
MIRT2673519	hsa-miR-4325	CLIP-seq
MIRT2673521	hsa-miR-4421	CLIP-seq
MIRT2696419	hsa-miR-4474-3p	CLIP-seq
MIRT2673522	hsa-miR-4486	CLIP-seq
MIRT2673524	hsa-miR-4649-5p	CLIP-seq
MIRT2673525	hsa-miR-4684-5p	CLIP-seq
MIRT2696420	hsa-miR-4699-5p	CLIP-seq
MIRT2673526	hsa-miR-4786-5p	CLIP-seq
MIRT2696421	hsa-miR-483-5p	CLIP-seq
MIRT2163811	hsa-miR-548ae	CLIP-seq
MIRT2163812	hsa-miR-548aj	CLIP-seq
MIRT2163813	hsa-miR-548am	CLIP-seq
MIRT2163815	hsa-miR-548x	CLIP-seq
MIRT2673527	hsa-miR-561	CLIP-seq
MIRT2673528	hsa-miR-593	CLIP-seq
MIRT2673531	hsa-miR-661	CLIP-seq
MIRT2673532	hsa-miR-769-5p	CLIP-seq
MIRT2696422	hsa-miR-921	CLIP-seq

Show/Hide all(16)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000463	Process	Maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IBA	21873635
GO:0000492	Process	Box C/D snoRNP assembly	IBA	21873635
GO:0000492	Process	Box C/D snoRNP assembly	IMP	17636026
GO:0001094	Function	TFIID-class transcription factor complex binding	IPI	17636026
GO:0005515	Function	Protein binding	IPI	17636026
GO:0005634	Component	Nucleus	IBA	21873635
GO:0019899	Function	Enzyme binding	IPI	23382074
GO:0042802	Function	Identical protein binding	IPI	17636026
GO:0046872	Function	Metal ion binding	IEA
GO:0048254	Process	SnoRNA localization	IBA	21873635
GO:0048254	Process	SnoRNA localization	IMP	17636026
GO:0051117	Function	ATPase binding	IPI	17636026
GO:0051259	Process	Protein complex oligomerization	IMP	17636026
GO:0070062	Component	Extracellular exosome	HDA	19056867
GO:0070761	Component	Pre-snoRNP complex	IBA	21873635
GO:0070761	Component	Pre-snoRNP complex	IDA	17636026

MIM	HGNC	e!Ensembl
620473	26089	ENSG00000117174

Protein

UniProt ID

Q9NWK9

Protein name

Box C/D snoRNA protein 1 (Serologically defined breast cancer antigen NY-BR-75) (Zinc finger HIT domain-containing protein 6)

Protein function

Required for box C/D snoRNAs accumulation involved in snoRNA processing, snoRNA transport to the nucleolus and ribosome biogenesis.

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF04438	zf-HIT	216 → 246	HIT zinc finger	Domain

Sequence

MEFAAENEGKSGGGLHSVAEGVRLSPEPGREGVRDLAGAEEFGGGEEGTGLTGIKEIGDG
EEGSGQRPEEIPMDLTVVKQEIIDWPGTEGRLAGQWVEQEVEDRPEVKDENAGVLEVKQE
TDSSLVVKEAKVGEPEVKEEKVKEEVMDWSEVKEEKDNLEIKQEEKFVGQCIKEELMHGE
CVKEEKDFLKKEIVDDTKVKEEPPINHPVGCKRKLAMSRCETCGTEEAKYRCPRCMRYSC
SLPCVKKHKAELTCNGVRDKTAYISIQQFTEMNLLSDYRFLEDVARTADHISRDAFLKRP
ISNKYMYFMKNRARRQGINLKLLPNGFTKRKENSTFFDKKKQQFCWHVKLQFPQSQAEYI
EKRVPDDKTINEILKPYIDPEKSDPVIRQRLKAYIRSQTGVQILMKIEYMQQNLVRYYEL
DPYKSLLDNLRNKVIIEYPTLHVVLKGSNNDMKVLHQVKSESTKNVGNEN

Sequence length

470

Interactions

View interactions

Show/Hide Causal Diseases (1)

Disease term	Disease name	dbSNP ID	References
Causal
Colorectal cancer	Colorectal Carcinoma	rs137854568, rs137854573, rs137854575, rs387906234, rs121908380, rs121908702, rs267606674, rs794729661, rs121909055, rs281865417, rs267606884, rs28934575, rs587776769, rs104893815, rs587776800 View all (467 more)

Show/Hide Text Mining Associations (1)

Disease Name	Relationship Type	References
Associations from Text Mining
Emphysema	Associate	19723343

ZNHIT6 (zinc finger HIT-type containing 6)