Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
54585
Gene name Gene Name - the full gene name approved by the HGNC.
Leucine zipper transcription factor like 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
LZTFL1
Synonyms (NCBI Gene) Gene synonyms aliases
BBS17
Disease Acronyms (UniProt) Disease acronyms from UniProt database
BBS17
Chromosome Chromosome number
3
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
3p21.31
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a ubiquitously expressed protein that localizes to the cytoplasm. This protein interacts with Bardet-Biedl Syndrome (BBS) proteins and, through its interaction with BBS protein complexes, regulates protein trafficking to the ciliary memb
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs431825171 CTTTG>- Pathogenic Non coding transcript variant, coding sequence variant, frameshift variant
rs515726135 A>G Pathogenic Missense variant, non coding transcript variant, coding sequence variant
rs769327864 G>A Pathogenic Coding sequence variant, non coding transcript variant, stop gained
rs1354476372 C>T Likely-pathogenic Genic upstream transcript variant, missense variant, initiator codon variant, 5 prime UTR variant
rs1553612629 C>A Likely-pathogenic Non coding transcript variant, stop gained, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT002741 hsa-miR-1-3p Microarray 15685193
MIRT017804 hsa-miR-335-5p Microarray 18185580
MIRT002741 hsa-miR-1-3p Microarray;Other 15685193
MIRT755573 miR-155 qRT-PCR 35992785
MIRT1124384 hsa-miR-1237 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 22072986, 25416956, 27173435, 28514442, 31515488, 32296183
GO:0005737 Component Cytoplasm IBA 21873635
GO:0005829 Component Cytosol IDA
GO:0005829 Component Cytosol TAS
GO:0042802 Function Identical protein binding IPI 22072986, 25416956, 27107012, 32296183
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
606568 6741 ENSG00000163818
Protein
UniProt ID Q9NQ48
Protein name Leucine zipper transcription factor-like protein 1
Protein function Regulates ciliary localization of the BBSome complex. Together with the BBSome complex, controls SMO ciliary trafficking and contributes to the sonic hedgehog (SHH) pathway regulation. May play a role in neurite outgrowth. May have tumor suppres
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF15294 Leu_zip 20 294 Leucine zipper Family
Tissue specificity TISSUE SPECIFICITY: Expressed in prostate, ovary, stomach, pancreas, esophagus, breast, liver, bladder, kidney, thyroid, colon and lung (at protein level). Down-regulated in multiple primary tumors (at protein level). Detected in testis, heart, skeletal m
Sequence
Sequence length 299
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    BBSome-mediated cargo-targeting to cilium
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Bardet-biedl syndrome Bardet-Biedl Syndrome, BARDET-BIEDL SYNDROME 17, Bardet-Biedl syndrome rs397704728, rs397515335, rs397515337, rs267607031, rs121918327, rs587777801, rs587777802, rs121918328, rs587777803, rs549625604, rs137852837, rs137852833, rs137852835, rs267606719, rs199874059
View all (560 more)
22510444, 23692385, 27312011
Brachydactyly Brachydactyly rs121908949, rs28937580, rs121909082, rs104894122, rs863223289, rs863223290, rs104894121, rs1587657302, rs863223292, rs74315386, rs74315387, rs28936397, rs753691079, rs121909348, rs121917852
View all (22 more)
Cone-rod dystrophy Cone-Rod Dystrophies rs200691042, rs121908281, rs28940314, rs121434337, rs80338903, rs121909398, rs28937883, rs397515360, rs137853006, rs786205085, rs137853040, rs137853041, rs786205086, rs104894671, rs1568626209
View all (207 more)
Cryptorchidism Cryptorchidism rs121912555, rs104894697, rs104894698, rs398122886
Unknown
Disease term Disease name Evidence References Source
Bardet-Biedl Syndrome Bardet-Biedl syndrome GenCC
Multiple Sclerosis Multiple Sclerosis GWAS
Oligodendroglioma Oligodendroglioma GWAS
Associations from Text Mining
Disease Name Relationship Type References
Bardet Biedl Syndrome Associate 12677556, 37239474
Carcinoma Renal Cell Inhibit 36966254
Chemical and Drug Induced Liver Injury Associate 34597274
Coronary Disease Associate 37964352
COVID 19 Associate 32558485, 32899439, 33396837, 33453462, 34118974, 34597274, 34673571, 34737427, 35196333, 35212764, 35753602, 37085563, 37160831, 37497655, 37795896
View all (2 more)
COVID 19 Stimulate 33604698
Kidney Neoplasms Inhibit 36966254
Neoplasms Associate 30552230, 31912669
Neoplasms Inhibit 36966254
Obesity Associate 39344392