Gene Gene information from NCBI Gene database.
Entrez ID 54549
Gene name Sidekick cell adhesion molecule 2
Gene symbol SDK2
Synonyms (NCBI Gene)
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Chromosome 17
Chromosome location 17q25.1
Summary The protein encoded by this gene is a member of the immunoglobulin superfamily. The protein contains two immunoglobulin domains and thirteen fibronectin type III domains. Fibronectin type III domains are present in both extracellular and intracellular pro
miRNA miRNA information provided by mirtarbase database.
264
miRTarBase ID miRNA Experiments Reference
MIRT721753 hsa-miR-3162-3p HITS-CLIP 19536157
MIRT721752 hsa-miR-6795-5p HITS-CLIP 19536157
MIRT721751 hsa-miR-6887-5p HITS-CLIP 19536157
MIRT721750 hsa-miR-328-5p HITS-CLIP 19536157
MIRT721749 hsa-miR-6885-5p HITS-CLIP 19536157
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
18
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 32296183
GO:0005886 Component Plasma membrane IEA
GO:0005886 Component Plasma membrane TAS
GO:0007155 Process Cell adhesion IEA
GO:0007156 Process Homophilic cell adhesion via plasma membrane adhesion molecules IBA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
607217 19308 ENSG00000069188
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q58EX2
Protein name Protein sidekick-2
Protein function Adhesion molecule that promotes lamina-specific synaptic connections in the retina and is specifically required for the formation of neuronal circuits that detect motion. Acts by promoting formation of synapses between two specific retinal cell
PDB 1WF5 , 1WFN , 1WFO , 1WIS
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF07679 I-set 114 203 Immunoglobulin I-set domain Domain
PF13927 Ig_3 214 287 Domain
PF07679 I-set 308 397 Immunoglobulin I-set domain Domain
PF07679 I-set 402 492 Immunoglobulin I-set domain Domain
PF13927 Ig_3 497 573 Domain
PF00041 fn3 592 677 Fibronectin type III domain Domain
PF00041 fn3 692 779 Fibronectin type III domain Domain
PF00041 fn3 793 883 Fibronectin type III domain Domain
PF00041 fn3 896 980 Fibronectin type III domain Domain
PF00041 fn3 994 1083 Fibronectin type III domain Domain
PF00041 fn3 1098 1187 Fibronectin type III domain Domain
PF00041 fn3 1201 1288 Fibronectin type III domain Domain
PF00041 fn3 1302 1387 Fibronectin type III domain Domain
PF00041 fn3 1402 1488 Fibronectin type III domain Domain
PF00041 fn3 1503 1611 Fibronectin type III domain Domain
PF00041 fn3 1625 1712 Fibronectin type III domain Domain
PF00041 fn3 1725 1811 Fibronectin type III domain Domain
PF00041 fn3 1825 1912 Fibronectin type III domain Domain
Sequence
MWGLLIWTLLALHQIRAARAQDDVSPYFKTEPVRTQVHLEGNRLVLTCMAEGSWPLEFKW
LHNNRELTKFSLEYRYMITSLDRTHAGFYRCIVRNRMGALLQRQTEVQVAYMGSFEEGEK
HQSVSHGEAAVIRAPRIASFPQPQVTWFRDGRKIPPSSRIAITLENTLVILSTVAPDAGR
YYVQAVNDKNGDNKTSQPITLTV
ENVGGPADPIAPTIIIPPKNTSVVAGTSEVTLECVAN
ARPLIKLHIIWKKDGVLLSGGISDHNRRLTIPNPTGSDAGYYECEAV
LRSSSVPSVVRGA
YLSVLEPPQFVKEPERHITAEMEKVVDIPCQAKGVPPPSITWYKDAAVVEVEKLTRFRQR
NDGGLQISGLVPDDTGMFQCFARNAAGEVQTSTYLAV
TSIAPNITRGPLDSTVIDGMSVV
LACETSGAPRPAITWQKGERILASGSVQLPRFTPLESGSLLISPTHISDAGTYTCLATNS
RGVDEASADLVV
WARTRITKPPQDQSVIKGTQASMVCGVTHDPRVTIRYIWEKDGATLGT
ESHPRIRLDRNGSLHISQTWSGDIGTYTCRVIS
AGGNDSRSAHLRVRQLPHAPEHPVATL
STVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARS
YQFRLCAVNDVGKGQFS
KDTERVSLPEEPPTAPPQNVIASGRTNQSIMIQWQPPPESHQN
GILKGYIIRYCLAGLPVGYQFKNITDADVNNLLLEDLIIWTNYEIEVAAYNSAGLGVYS
S
KVTEWTLQGVPTVPPGNVHAEATNSTTIRFTWNAPSPQFINGINQGYKLIAWEPEQEEEV
TMVTARPNFQDSIHVGFVSGLKKFTEYFTSVLCFTTPGDGPRS
TPQLVRTHEDVPGPVGH
LSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTA
LTTYTIEVAAMTSKGQGQVS
ASTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGK
TSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTS
PPS
QPSRKIQTLQAPPDMAPANVSLRTASETSLWLRWMPLPEMEYNGNPESVGYKIKYSR
SDGHGKTLSHVVQDRVERDYTIEDLEEWTEYRVQVQAFNAIGSGPWS
QTVVGRTRESVPS
SGPTNVSALATTSSSMLVRWSEVPEADRNGLVLGYKVMYKEKDSDTQPRFWLVEGNSSRS
AQLTGLGKYVLYEVQVLAFTRIGDGSPS
HPPILERTLDDVPGPPMGILFPEVRTTSVRLI
WQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTR
KGWGEAA
EALVVTTEKRDRPQPPSRPMVQQEDVRARSVLLSWEPGSDGLSPVRYYTIQTR
ELPSGRWALHSASVSHNASSFIVDRLKPFTSYKFRVKATNDIGDSEFS
EESESLTTLQAA
PDEAPTILSVTPHTTTSVLIRWQPPAEDKINGILLGFRIRYRELLYEGLRGFTLRGINNP
GATWAELTSMYSMRNLSRPSLTQYELDNLNKHRRYEIRMSVYNAVGEGPSS
PPQEVFVGE
AVPTAAPRNVVVHGATATQLDVTWEPPPLDSQNGDIQGYKIYFWEAQRGNLTERVKTLFL
AENSVKLKNLTGYTAYMVSVAAFNAAGDGPRS
TPTQGQTQQAAPSAPSSVKFSELTTTSV
NVSWEAPQFPNGILEGYRLVYEPCSPVDGVSKIVTVDVKGNSPLWLKVKDLAEGVTYRFR
IRAKTFTYGPE
IEANVTTGPGEGAPGPPGVPIIVRYSSAIAIHWSSGDPGKGPITRYVIE
ARPSDEGLWDILIKDIPKEVSSYTFSMDILKPGVSYDFRVIAVNDYGFGTPS
SPSQSVPA
QKANPFYEEWWFLVVIALVGLIFILLLVFVLIIRGQSKKYAKKTDSGNSAKSGALGHSEM
MSLDESSFPALELNNRRLSVKNSFCRKNGLYTRSPPRPSPGSLHYSDEDVTKYNDLIPAE
SSSLTEKPSEISDSQGSDSEYEVDSNHQKAHSFVNHYISDPTYYNSWRRQQKGISRAQAY
SYTESDSGEPDHTTVTNSTSTQQGSLFRPKASRTPTPQNPPNPPSQQSTLYRPPSSLAPG
SRAPIAGFSSFV
Sequence length 2172
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    SDK interactions
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
53
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Acute myeloid leukemia Likely benign rs35867741 RCV005929490
Familial cancer of breast Uncertain significance rs541836618 RCV005932552
Gastric cancer Likely benign rs35867741 RCV005929492
Malignant tumor of esophagus Likely benign; Uncertain significance rs35867741, rs144120477 RCV005929491
RCV005939187
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Medulloblastoma Associate 36273157
Neoplasms Associate 36273157