Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
54520
Gene name Gene Name - the full gene name approved by the HGNC.
CCC complex scaffolding subunit CCDC93
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
CCDC93
Synonyms (NCBI Gene) Gene synonyms aliases
-
Chromosome Chromosome number
2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
2q14.1
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT659728 hsa-miR-4280 HITS-CLIP 23824327
MIRT659727 hsa-miR-3168 HITS-CLIP 23824327
MIRT659726 hsa-miR-148b-5p HITS-CLIP 23824327
MIRT659725 hsa-miR-6874-3p HITS-CLIP 23824327
MIRT659724 hsa-miR-5584-3p HITS-CLIP 23824327
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0005515 Function Protein binding IPI 25355947, 26496610, 28514442, 28892079, 29778605, 30833792, 33961781, 35271311, 37172566
GO:0005768 Component Endosome IEA
GO:0005769 Component Early endosome IEA
GO:0006893 Process Golgi to plasma membrane transport IBA
GO:0006893 Process Golgi to plasma membrane transport IMP 25355947
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
620553 25611 ENSG00000125633
Protein
UniProt ID Q567U6
Protein name Coiled-coil domain-containing protein 93
Protein function Component of the commander complex that is essential for endosomal recycling of transmembrane cargos; the commander complex is composed of composed of the CCC subcomplex and the retriever subcomplex (PubMed:37172566, PubMed:38459129). Component
PDB 8F2U , 8P0V , 8P0W , 8P0X
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF09762 CCDC93_CC 27 206 CCDC93, coiled-coil domain Coiled-coil
Sequence
MGLPRGPEGQGLPEVETREDEEQNVKLTEILELLVAAGYFRARIKGLSPFDKVVGGMTWC
ITTCNFDVDVDLLFQENSTIGQKIALSEKIVSVLPRMKCPHQLEPHQIQGMDFIHIFPVV
QWLVKRAIETKEEMGDYIRSYSVSQFQKTYSLPEDDDFIKRKEKAIKTVVDLSEVYKPRR
KYKRHQGAEELLDEESRIHATLLEYG
RRYGFSRQSKMEKAEDKKTALPAGLSATEKADAH
EEDELRAAEEQRIQSLMTKMTAMANEESRLTASSVGQIVGLCSAEIKQIVSEYAEKQSEL
SAEESPEKLGTSQLHRRKVISLNKQIAQKTKHLEELRASHTSLQARYNEAKKTLTELKTY
SEKLDKEQAALEKIESKADPSILQNLRALVAMNENLKSQEQEFKAHCREEMTRLQQEIEN
LKAERAPRGDEKTLSSGEPPGTLTSAMTHDEDLDRRYNMEKEKLYKIRLLQARRNREIAI
LHRKIDEVPSRAELIQYQKRFIELYRQISAVHKETKQFFTLYNTLDDKKVYLEKEISLLN
SIHENFSQAMASPAARDQFLRQMEQIVEGIKQSRMKMEKKKQENKMRRDQLNDQYLELLE
KQRLYFKTVKEFKEEGRKNEMLLSKVKAKAS
Sequence length 631
Interactions View interactions
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Glioblastoma Glioblastoma N/A N/A GWAS