Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene miRNA Gene ontology Other IDs Protein Associated diseases
Entrez ID	54432
Gene name	Yip1 domain family member 1
Gene symbol	YIPF1
Synonyms (NCBI Gene)	DJ167A19.1FinGER1YIPFbeta3AYip5a
Chromosome	1
Chromosome location	1p32.3

124

Show/Hide all (124)

miRTarBase ID	miRNA	Experiments	Reference
MIRT027501	hsa-miR-98-5p	Microarray	19088304
MIRT1498706	hsa-miR-1253	CLIP-seq
MIRT1498707	hsa-miR-1270	CLIP-seq
MIRT1498708	hsa-miR-185	CLIP-seq
MIRT1498709	hsa-miR-2392	CLIP-seq
MIRT1498710	hsa-miR-3143	CLIP-seq
MIRT1498711	hsa-miR-4286	CLIP-seq
MIRT1498712	hsa-miR-4306	CLIP-seq
MIRT1498713	hsa-miR-452	CLIP-seq
MIRT1498714	hsa-miR-4531	CLIP-seq
MIRT1498715	hsa-miR-4644	CLIP-seq
MIRT1498716	hsa-miR-4676-3p	CLIP-seq
MIRT1498717	hsa-miR-543	CLIP-seq
MIRT1498718	hsa-miR-561	CLIP-seq
MIRT1498719	hsa-miR-620	CLIP-seq
MIRT2150181	hsa-miR-1227	CLIP-seq
MIRT1498706	hsa-miR-1253	CLIP-seq
MIRT1498707	hsa-miR-1270	CLIP-seq
MIRT2150182	hsa-miR-149	CLIP-seq
MIRT1498708	hsa-miR-185	CLIP-seq
MIRT2150183	hsa-miR-196a	CLIP-seq
MIRT2150184	hsa-miR-196b	CLIP-seq
MIRT2150185	hsa-miR-199a-5p	CLIP-seq
MIRT2150186	hsa-miR-199b-5p	CLIP-seq
MIRT2150187	hsa-miR-2113	CLIP-seq
MIRT1498710	hsa-miR-3143	CLIP-seq
MIRT2150188	hsa-miR-3194-3p	CLIP-seq
MIRT2150189	hsa-miR-361-3p	CLIP-seq
MIRT2150190	hsa-miR-3688-5p	CLIP-seq
MIRT2150191	hsa-miR-4252	CLIP-seq
MIRT2150192	hsa-miR-4277	CLIP-seq
MIRT2150193	hsa-miR-4302	CLIP-seq
MIRT1498712	hsa-miR-4306	CLIP-seq
MIRT1498714	hsa-miR-4531	CLIP-seq
MIRT1498715	hsa-miR-4644	CLIP-seq
MIRT2150194	hsa-miR-4646-5p	CLIP-seq
MIRT2150195	hsa-miR-4661-3p	CLIP-seq
MIRT2150196	hsa-miR-4726-3p	CLIP-seq
MIRT1498717	hsa-miR-543	CLIP-seq
MIRT1498719	hsa-miR-620	CLIP-seq
MIRT2150197	hsa-miR-644	CLIP-seq
MIRT2150198	hsa-miR-760	CLIP-seq
MIRT2150199	hsa-miR-767-3p	CLIP-seq
MIRT2150200	hsa-miR-767-5p	CLIP-seq
MIRT2370444	hsa-miR-1207-3p	CLIP-seq
MIRT1498706	hsa-miR-1253	CLIP-seq
MIRT1498707	hsa-miR-1270	CLIP-seq
MIRT2370445	hsa-miR-1305	CLIP-seq
MIRT1498708	hsa-miR-185	CLIP-seq
MIRT2150183	hsa-miR-196a	CLIP-seq
MIRT2150184	hsa-miR-196b	CLIP-seq
MIRT2370446	hsa-miR-198	CLIP-seq
MIRT1498710	hsa-miR-3143	CLIP-seq
MIRT2370447	hsa-miR-3160-3p	CLIP-seq
MIRT2370448	hsa-miR-3607-5p	CLIP-seq
MIRT2150189	hsa-miR-361-3p	CLIP-seq
MIRT2370449	hsa-miR-3913-3p	CLIP-seq
MIRT2370450	hsa-miR-3919	CLIP-seq
MIRT2370451	hsa-miR-3938	CLIP-seq
MIRT2370452	hsa-miR-409-5p	CLIP-seq
MIRT2150192	hsa-miR-4277	CLIP-seq
MIRT1498711	hsa-miR-4286	CLIP-seq
MIRT1498712	hsa-miR-4306	CLIP-seq
MIRT2370453	hsa-miR-4477a	CLIP-seq
MIRT1498713	hsa-miR-452	CLIP-seq
MIRT1498714	hsa-miR-4531	CLIP-seq
MIRT2370454	hsa-miR-4643	CLIP-seq
MIRT1498715	hsa-miR-4644	CLIP-seq
MIRT2150195	hsa-miR-4661-3p	CLIP-seq
MIRT1498716	hsa-miR-4676-3p	CLIP-seq
MIRT2370455	hsa-miR-4678	CLIP-seq
MIRT2370456	hsa-miR-4712-5p	CLIP-seq
MIRT2150196	hsa-miR-4726-3p	CLIP-seq
MIRT2370457	hsa-miR-4756-3p	CLIP-seq
MIRT2370458	hsa-miR-4760-3p	CLIP-seq
MIRT2370459	hsa-miR-4766-5p	CLIP-seq
MIRT2370460	hsa-miR-4783-3p	CLIP-seq
MIRT2370461	hsa-miR-498	CLIP-seq
MIRT1498717	hsa-miR-543	CLIP-seq
MIRT1498718	hsa-miR-561	CLIP-seq
MIRT2370462	hsa-miR-587	CLIP-seq
MIRT1498719	hsa-miR-620	CLIP-seq
MIRT2370463	hsa-miR-642b	CLIP-seq
MIRT2370464	hsa-miR-770-5p	CLIP-seq
MIRT2150181	hsa-miR-1227	CLIP-seq
MIRT2150182	hsa-miR-149	CLIP-seq
MIRT2150185	hsa-miR-199a-5p	CLIP-seq
MIRT2150186	hsa-miR-199b-5p	CLIP-seq
MIRT2664018	hsa-miR-2053	CLIP-seq
MIRT2150187	hsa-miR-2113	CLIP-seq
MIRT2150188	hsa-miR-3194-3p	CLIP-seq
MIRT2150190	hsa-miR-3688-5p	CLIP-seq
MIRT2150191	hsa-miR-4252	CLIP-seq
MIRT2150192	hsa-miR-4277	CLIP-seq
MIRT2150193	hsa-miR-4302	CLIP-seq
MIRT2370454	hsa-miR-4643	CLIP-seq
MIRT2150194	hsa-miR-4646-5p	CLIP-seq
MIRT2664019	hsa-miR-4663	CLIP-seq
MIRT2664020	hsa-miR-4775	CLIP-seq
MIRT2664021	hsa-miR-544	CLIP-seq
MIRT2664022	hsa-miR-553	CLIP-seq
MIRT2370463	hsa-miR-642b	CLIP-seq
MIRT2150197	hsa-miR-644	CLIP-seq
MIRT2150198	hsa-miR-760	CLIP-seq
MIRT2150199	hsa-miR-767-3p	CLIP-seq
MIRT2150200	hsa-miR-767-5p	CLIP-seq
MIRT2150181	hsa-miR-1227	CLIP-seq
MIRT2150185	hsa-miR-199a-5p	CLIP-seq
MIRT2150186	hsa-miR-199b-5p	CLIP-seq
MIRT2664018	hsa-miR-2053	CLIP-seq
MIRT2150187	hsa-miR-2113	CLIP-seq
MIRT2150190	hsa-miR-3688-5p	CLIP-seq
MIRT2150191	hsa-miR-4252	CLIP-seq
MIRT2150192	hsa-miR-4277	CLIP-seq
MIRT2150193	hsa-miR-4302	CLIP-seq
MIRT2370454	hsa-miR-4643	CLIP-seq
MIRT2150194	hsa-miR-4646-5p	CLIP-seq
MIRT2664019	hsa-miR-4663	CLIP-seq
MIRT2664020	hsa-miR-4775	CLIP-seq
MIRT2664021	hsa-miR-544	CLIP-seq
MIRT2664022	hsa-miR-553	CLIP-seq
MIRT2370463	hsa-miR-642b	CLIP-seq
MIRT2150197	hsa-miR-644	CLIP-seq
MIRT2150200	hsa-miR-767-5p	CLIP-seq

Show/Hide all (16)

GO ID	Ontology	Definition	Evidence	Reference
GO:0000138	Component	Golgi trans cisterna	IDA	28286305
GO:0005515	Function	Protein binding	IPI	25416956, 28286305, 28514442, 32296183, 32814053, 33961781
GO:0005654	Component	Nucleoplasm	IDA
GO:0005768	Component	Endosome	IEA
GO:0005794	Component	Golgi apparatus	IBA
GO:0005794	Component	Golgi apparatus	IDA
GO:0005794	Component	Golgi apparatus	IEA
GO:0005797	Component	Golgi medial cisterna	IDA	28286305
GO:0005802	Component	Trans-Golgi network	IDA	28286305
GO:0005886	Component	Plasma membrane	IDA
GO:0012505	Component	Endomembrane system	IEA
GO:0016020	Component	Membrane	IEA
GO:0016192	Process	Vesicle-mediated transport	IEA
GO:0030133	Component	Transport vesicle	IDA
GO:0031267	Function	Small GTPase binding	IEA
GO:0031902	Component	Late endosome membrane	IEA

MIM	HGNC	e!Ensembl
617521	25231	ENSG00000058799

Q9Y548

Protein name

Protein YIPF1 (YIP1 family member 1)

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF04893	Yip1	98 → 277	Yip1 domain	Domain

Sequence

MAAVDDLQFEEFGNAATSLTANPDATTVNIEDPGETPKHQPGSPRGSGREEDDELLGNDD
SDKTELLAGQKKSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNPDL
YGPFWICATLVFAIAISGNLSNFLIHLGEKTYHYVPEFRKVSIAATIIYAYAWLVPLALW
GFLMWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGISGS
LLAMTFWPAVREDNRRVALATIVTIVLLHMLLSVGCLAYFFDAPEMDHLPTTTATPNQTV
AAAKSS

Sequence length

306

Interactions

View interactions

Evidence Score: ★☆☆☆☆ Gene-disease association found in Text Mining only ★★☆☆☆ Found in Text Mining and Unknown/Other Associations ★★★☆☆ Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆ ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★ ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)

Show/Hide Unknown Diseases (2)

Phenotype Name	Clinical Significance	Source	Evidence Score
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
NON-ALCOHOLIC FATTY LIVER DISEASE	—	GWAS catalog	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations
Thyroid cancer, nonmedullary, 1	Uncertain significance	ClinVar	★★★★★ ★★☆☆☆ Found in Text Mining + Unknown/Other Associations

Show/Hide Text Mining Associations (1)

Disease Name	Relationship Type	References	Evidence Score
Associations from Text MiningDisease associations identified through Pubtator
Carcinoma Hepatocellular	Associate	40055377	★★★★★ ★☆☆☆☆ Found in Text Mining only

YIPF1 (Yip1 domain family member 1)