Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
5395
Gene name Gene Name - the full gene name approved by the HGNC.
PMS1 homolog 2, mismatch repair system component
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PMS2
Synonyms (NCBI Gene) Gene synonyms aliases
HNPCC4, LYNCH4, MLH4, MMRCS4, PMS-2, PMS2CL, PMSL2
Chromosome Chromosome number
7
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
7p22.1
Summary Summary of gene provided in NCBI Entrez Gene.
The protein encoded by this gene is a key component of the mismatch repair system that functions to correct DNA mismatches and small insertions and deletions that can occur during DNA replication and homologous recombination. This protein forms heterodime
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs1805322 G>A,T Uncertain-significance, benign-likely-benign, conflicting-interpretations-of-pathogenicity, likely-benign Upstream transcript variant, intron variant, 5 prime UTR variant, missense variant, non coding transcript variant, coding sequence variant, genic upstream transcript variant
rs2345056 G>A,C Conflicting-interpretations-of-pathogenicity, uncertain-significance Genic upstream transcript variant, intron variant
rs3209663 C>A,T Pathogenic Intron variant, stop gained, 5 prime UTR variant, missense variant, non coding transcript variant, coding sequence variant, genic upstream transcript variant
rs36038802 G>A,T Pathogenic Non coding transcript variant, stop gained, genic upstream transcript variant, 5 prime UTR variant, missense variant, coding sequence variant
rs56203955 T>C,G Uncertain-significance, conflicting-interpretations-of-pathogenicity Non coding transcript variant, genic upstream transcript variant, 5 prime UTR variant, missense variant, intron variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT048727 hsa-miR-96-5p CLASH 23622248
MIRT043223 hsa-miR-324-5p CLASH 23622248
MIRT736983 hsa-miR-4328 Microarray, Immunohistochemistry (IHC) 32170146
MIRT2072356 hsa-miR-4455 CLIP-seq
MIRT2072357 hsa-miR-4506 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0003677 Function DNA binding IDA 10871409
GO:0003677 Function DNA binding IEA
GO:0003697 Function Single-stranded DNA binding IDA 11809883
GO:0004518 Function Nuclease activity IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
600259 9122 ENSG00000122512
Protein
UniProt ID P54278
Protein name Mismatch repair endonuclease PMS2 (EC 3.1.-.-) (DNA mismatch repair protein PMS2) (PMS1 protein homolog 2)
Protein function Component of the post-replicative DNA mismatch repair system (MMR) (PubMed:30653781, PubMed:35189042). Heterodimerizes with MLH1 to form MutL alpha. DNA repair is initiated by MutS alpha (MSH2-MSH6) or MutS beta (MSH2-MSH3) binding to a dsDNA mi
PDB 1EA6 , 1H7S , 1H7U , 5U5R , 6MFQ , 7RCB , 7RCI , 7RCK
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13589 HATPase_c_3 33 161 Domain
PF01119 DNA_mis_repair 248 363 DNA mismatch repair protein, C-terminal domain Family
PF08676 MutL_C 676 822 MutL C terminal dimerisation domain Domain
Sequence
MERAESSSTEPAKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKD
YGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGFRGEALSSLCALSDV
TISTCHASAKVGTRLMFDHNGKIIQKTPYPRPRGTTVSVQQ
LFSTLPVRHKEFQRNIKKE
YAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLI
PFVQLPPSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPA
KVCRLVNEVYHMYNRHQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLI
GMF
DSDVNKLNVSQQPLLDVEGNLIKMHAADLEKPMVEKQDQSPSLRTGEEKKDVSISRL
REAFSLRHTTENKPHSPKTPEPRRSPLGQKRGMLSSSTSGAISDKGVLRPQKEAVSSSHG
PSDPTDRAEVEKDSGHGSTSVDSEGFSIPDTGSHCSSEYAASSPGDRGSQEHVDSQEKAP
KTDDSFSDVDCHSNQEDTGCKFRVLPQPTNLATPNTKRFKKEEILSSSDICQKLVNTQDM
SASQVDVAVKINKKVVPLDFSMSSLAKRIKQLHHEAQQSEGEQNYRKFRAKICPGENQAA
EDELRKEISKTMFAEMEIIGQFNLGFIITKLNEDIFIVDQHATDEKYNFEMLQQHTVLQG
QRLIAPQTLNLTAVNEAVLIENLEIFRKNGFDFVIDENAPVTERAKLISLPTSKNWTFGP
QDVDELIFMLSDSPGVMCRPSRVKQMFASRACRKSVMIGTAL
NTSEMKKLITHMGEMDHP
WNCPHGRPTMRHIANLGVISQN
Sequence length 862
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Mismatch repair
Fanconi anemia pathway
  Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)
Defective Mismatch Repair Associated With MLH1
Defective Mismatch Repair Associated With PMS2
TP53 Regulates Transcription of DNA Repair Genes
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Breast Cancer Malignant tumor of breast rs876661113, rs757679199, rs200640585 N/A
Colorectal Neoplasms hereditary nonpolyposis colorectal neoplasms rs3209663, rs1562644987, rs587779343, rs1583410315, rs573125799, rs1583285552, rs1554297523, rs1583375182, rs1057524433, rs876661256, rs1562678257, rs1554297636, rs1782947222, rs763308607, rs1064793234
View all (222 more)
N/A
Endometrial carcinoma endometrial carcinoma rs1554306353, rs121434629, rs587778617, rs587782704, rs1554294505, rs988423880, rs587779333 N/A
hereditary cancer Hereditary cancer rs587782704 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Breast Carcinoma hereditary breast carcinoma N/A N/A GenCC
ovarian cancer Ovarian cancer N/A N/A ClinVar
Ovarian cancer ovarian cancer N/A N/A GenCC
Pancreatic Neoplasm malignant pancreatic neoplasm N/A N/A GenCC
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Associate 19283792, 23648460, 29972732, 37864137
Adenocarcinoma Mucinous Associate 30173239, 32826709
Adenocarcinoma of Lung Associate 34642306
Adenoma Associate 24925148
Adenoma Inhibit 29976631
Adenomatous Polyposis Coli Associate 22510757, 24310308, 30324682, 39519399
Adenomatous Polyps Associate 28381238
Alopecia Areata Associate 23326468
Anophthalmia with pulmonary hypoplasia Associate 37200008
Appendiceal Neoplasms Associate 23648460