Gene Gene information from NCBI Gene database.
Entrez ID 538
Gene name ATPase copper transporting alpha
Gene symbol ATP7A
Synonyms (NCBI Gene)
DSMAXHMNXMKMNKSMAX3
Chromosome X
Chromosome location Xq21.1
Summary This gene encodes a transmembrane protein that functions in copper transport across membranes. This protein is localized to the trans Golgi network, where it is predicted to supply copper to copper-dependent enzymes in the secretory pathway. It relocalize
SNPs SNP information provided by dbSNP.
131
SNP ID Visualize variation Clinical significance Consequence
rs67273048 G>A Pathogenic Coding sequence variant, stop gained, intron variant
rs72554636 C>T Pathogenic Coding sequence variant, stop gained, intron variant
rs72554638 C>A,T Conflicting-interpretations-of-pathogenicity Coding sequence variant, stop gained, intron variant, synonymous variant
rs72554639 G>C Likely-pathogenic Coding sequence variant, intron variant, missense variant
rs72554640 C>T Pathogenic Coding sequence variant, stop gained, intron variant
miRNA miRNA information provided by mirtarbase database.
401
miRTarBase ID miRNA Experiments Reference
MIRT018615 hsa-miR-335-5p Microarray 18185580
MIRT019495 hsa-miR-148b-3p Microarray 17612493
MIRT021461 hsa-miR-9-5p Microarray 17612493
MIRT023385 hsa-miR-122-5p Microarray 17612493
MIRT044676 hsa-miR-320a CLASH 23622248
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
148
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001568 Process Blood vessel development IEA
GO:0001568 Process Blood vessel development ISS
GO:0001836 Process Release of cytochrome c from mitochondria IEA
GO:0001974 Process Blood vessel remodeling IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
300011 869 ENSG00000165240
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q04656
Protein name Copper-transporting ATPase 1 (EC 7.2.2.8) (Copper pump 1) (Menkes disease-associated protein)
Protein function ATP-driven copper (Cu(+)) ion pump that plays an important role in intracellular copper ion homeostasis (PubMed:10419525, PubMed:11092760, PubMed:28389643). Within a catalytic cycle, acquires Cu(+) ion from donor protein on the cytoplasmic side
PDB 1AW0 , 1KVI , 1KVJ , 1Q8L , 1S6O , 1S6U , 1Y3J , 1Y3K , 1YJR , 1YJT , 1YJU , 1YJV , 2AW0 , 2G9O , 2GA7 , 2K1R , 2KIJ , 2KMV , 2KMX , 3CJK , 5T7L , 7LU8
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00403 HMA 11 72 Heavy-metal-associated domain Domain
PF00403 HMA 174 235 Heavy-metal-associated domain Domain
PF00403 HMA 280 340 Heavy-metal-associated domain Domain
PF00403 HMA 380 441 Heavy-metal-associated domain Domain
PF00403 HMA 492 552 Heavy-metal-associated domain Domain
PF00403 HMA 567 628 Heavy-metal-associated domain Domain
PF00122 E1-E2_ATPase 814 1022 Family
PF00702 Hydrolase 1038 1313 Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed including in heart, brain, lung, muscle, kidney, pancreas, and to a lesser extent placenta (PubMed:8490646, PubMed:8490659). Expressed in fibroblasts, aortic smooth muscle cells, aortic endothelial cells and umbilical
Sequence
MDPSMGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPK
TLQEAIDDMGFD
AVIHNPDPLPVLTDTLFLTVTASLTLPWDHIQSTLLKTKGVTDIKIYP
QKRTVAVTIIPSIVNANQIKELVPELSLDTGTLEKKSGACEDHSMAQAGEVVLKMKVEGM
TCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFP
AFVKK
QPKYLKLGAIDVERLKNTPVKSSEGSQQRSPSYTNDSTATFIIDGMHCKSCVSNIESTLS
ALQYVSSIVVSLENRSAIVKYNASSVTPESLRKAIEAVSP
GLYRVSITSEVESTSNSPSS
SSLQKIPLNVVSQPLTQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVE
YDPLLTSPETLRGAIEDMGFD
ATLSDTNEPLVVIAQPSSEMPLLTSTNEFYTKGMTPVQD
KEEGKNSSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPP
MIAEFIRELGFG
ATVIENADEGDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA
TNKAHIKYDPEIIGPRDIIHTIESLGFE
ASLVKKDRSASHLDHKREIRQWRRSFLVSLFF
CIPVMGLMIYMMVMDHHFATLHHNQNMSKEEMINLHSSMFLERQILPGLSVMNLLSFLLC
VPVQFFGGWYFYIQAYKALKHKTANMDVLIVLATTIAFAYSLIILLVAMYERAKVNPITF
FDTPPMLFVFIALGRWLEHIAKGKTSEALAKLISLQATEATIVTLDSDNILLSEEQVDVE
LVQRGDIIKVVPGGKFPVDGRVIEGHSMVDESLITGEAMPVAKKPGSTVIAGSINQNGSL
LICATHVGADTTLSQIVKLVEEAQTSKAPIQQFADKLSGYFVPFIVFVSIATLLVWIVIG
FLNFEIVETYFPGYNRSISRTETIIRFAFQASITVLCIACPCSLGLATPTAVMVGTGVGA
QN
GILIKGGEPLEMAHKVKVVVFDKTGTITHGTPVVNQVKVLTESNRISHHKILAIVGTA
ESNSEHPLGTAITKYCKQELDTETLGTCIDFQVVPGCGISCKVTNIEGLLHKNNWNIEDN
NIKNASLVQIDASNEQSSTSSSMIIDAQISNALNAQQYKVLIGNREWMIRNGLVINNDVN
DFMTEHERKGRTAVLVAVDDELCGLIAIADTVKPEAELAIHILKSMGLEVVLMTGDNSKT
ARSIASQVGITKVFAEVLPSHKVAKVKQLQEEGKRVAMVGDGINDSPALAMAN
VGIAIGT
GTDVAIEAADVVLIRNDLLDVVASIDLSRKTVKRIRINFVFALIYNLVGIPIAAGVFMPI
GLVLQPWMGSAAMAASSVSVVLSSLFLKLYRKPTYESYELPARSQIGQKSPSEISVHVGI
DDTSRNSPKLGLLDRIVNYSRASINSLLSDKRSLNSVVTSEPDKHSLLVGDFREDDDTAL
Sequence length 1500
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Platinum drug resistance
Mineral absorption
  Ion influx/efflux at host-pathogen interface
Ion transport by P-type ATPases
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
4917
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
ATP7A-related disorder Likely pathogenic; Pathogenic rs2522290057, rs797045397, rs2522419324, rs2522293582, rs1557238665 RCV005869794
RCV004725044
RCV003400363
RCV003949025
RCV004742494
Charcot-Marie-Tooth disease Pathogenic rs267606672 RCV000789728
Cutis laxa, X-linked Likely pathogenic; Pathogenic rs2149097380, rs797045357, rs2149095968, rs797045347, rs2149083118, rs2149109587, rs2522414410, rs2522293121, rs2522414777, rs2522289608, rs2522290463, rs2522295420, rs2522350411, rs797045397, rs2522347918
View all (104 more)
RCV001775413
RCV002019219
RCV002044567
RCV002049796
RCV001898748
RCV001951484
RCV002306486
RCV002306510
RCV002306527
RCV002306555
RCV002306585
RCV002306618
RCV002306641
RCV002306729
RCV002306734
RCV002309568
RCV002309589
RCV002309604
RCV002309703
RCV002309754
RCV002309920
RCV002309937
RCV002309948
RCV002309985
RCV002310003
RCV002307916
RCV002307937
RCV002307976
RCV002308047
RCV002308048
RCV002308144
RCV002308183
RCV002308354
RCV002308371
RCV002309042
RCV002309139
RCV002309170
RCV002309199
RCV002309249
RCV002309277
RCV002309279
RCV002309281
RCV002309314
RCV002309354
RCV002309355
RCV002309411
RCV002306848
RCV002307056
RCV002307061
RCV002307090
RCV002307114
RCV002307138
RCV002307152
RCV002307209
RCV002307214
RCV002310136
RCV002310242
RCV002310312
RCV002310349
RCV002310378
RCV002310403
RCV002310418
RCV002310436
RCV002310482
RCV002310520
RCV002310537
RCV002308432
RCV003064740
RCV003064742
RCV003050627
RCV002760856
RCV002811279
RCV002820783
RCV002871867
RCV002866988
RCV000806050
RCV005213231
RCV000807620
RCV003765212
RCV002517056
RCV001271473
RCV001330731
RCV001044291
RCV001857689
RCV004796090
RCV001274025
RCV002517057
RCV002517917
RCV000543168
RCV001852548
RCV002917342
RCV002953115
RCV000012549
RCV001851805
RCV000012559
RCV001231166
RCV001206423
RCV003777273
RCV003777274
RCV003388229
RCV003782762
RCV003802891
RCV003803245
RCV004566571
RCV000530815
RCV000538247
RCV000552537
RCV000692272
RCV000704722
RCV000796257
RCV000806929
RCV000813946
RCV000803093
RCV001049687
RCV001194652
RCV001198146
RCV001215698
RCV001238546
RCV001237602
RCV001247321
RCV001254118
Menkes kinky-hair syndrome Pathogenic; Likely pathogenic rs2149094952, rs2149112273, rs797045357, rs2149095968, rs797045347, rs2149083118, rs2149109587, rs2149113551, rs2149083474, rs2522414410, rs2522293121, rs2522414777, rs2522289608, rs2522290463, rs2522295420
View all (177 more)
RCV001374410
RCV001805754
RCV002019219
RCV002044567
RCV002049796
RCV001898748
RCV001951484
RCV003312048
RCV002238610
RCV002306486
RCV002306510
RCV002306527
RCV002306555
RCV002306585
RCV002306618
RCV002306641
RCV002306729
RCV002306734
RCV002309568
RCV002309589
RCV002309604
RCV002309703
RCV002309754
RCV002309920
RCV002309937
RCV002309948
RCV002309985
RCV002310003
RCV002307916
RCV002307937
RCV002307976
RCV002308047
RCV002308048
RCV002308144
RCV002308183
RCV002308354
RCV002308371
RCV002309042
RCV002309139
RCV002309170
RCV002309199
RCV002309249
RCV002309277
RCV002309279
RCV002309281
RCV002309314
RCV002309354
RCV002309355
RCV002309411
RCV002306848
RCV002307056
RCV002307061
RCV002307090
RCV002307114
RCV002307138
RCV002307152
RCV002307209
RCV002307214
RCV002310136
RCV002310242
RCV002310312
RCV002310349
RCV002310378
RCV002310403
RCV002310418
RCV002310436
RCV002310482
RCV002310520
RCV002310537
RCV002308432
RCV002472153
RCV002470435
RCV003312069
RCV003312070
RCV003312071
RCV000184052
RCV002760856
RCV002811279
RCV002820783
RCV002871867
RCV002866988
RCV000195012
RCV000194247
RCV000193287
RCV000194386
RCV000193458
RCV000193526
RCV000194569
RCV000193686
RCV000194736
RCV000192761
RCV000192830
RCV000193862
RCV000195126
RCV000193177
RCV000194213
RCV000193235
RCV000194275
RCV000192316
RCV000193718
RCV000194429
RCV000192463
RCV000193497
RCV000194915
RCV000193010
RCV000194586
RCV000193917
RCV000192993
RCV000193991
RCV000195017
RCV000194105
RCV000195170
RCV000194263
RCV000192663
RCV000193280
RCV000194331
RCV000192361
RCV000194674
RCV000193736
RCV000192331
RCV000194783
RCV000192771
RCV000193806
RCV000194847
RCV000193969
RCV000193405
RCV000194077
RCV000193101
RCV000194513
RCV000192548
RCV000193069
RCV000194489
RCV000193509
RCV000194181
RCV000192588
RCV000193615
RCV000194716
RCV000192748
RCV000194826
RCV000192813
RCV000195251
RCV000193824
RCV000195218
RCV000193268
RCV000194316
RCV000194924
RCV000193334
RCV000192416
RCV000193484
RCV000192535
RCV000193560
RCV000194645
RCV000194717
RCV000193682
RCV000192966
RCV000194001
RCV000194120
RCV002917342
RCV002953115
RCV003226753
RCV003312100
RCV000195239
RCV000012551
RCV000012555
RCV000194377
RCV000012560
RCV001206423
RCV003312827
RCV003312872
RCV003312877
RCV003312928
RCV003312933
RCV003782762
RCV003802891
RCV003803245
RCV004566572
RCV004573936
RCV004573937
RCV004594894
RCV003311807
RCV001265560
RCV000502988
RCV003311831
RCV000530815
RCV000538247
RCV000552537
RCV000626101
RCV000692272
RCV000704722
RCV003311883
RCV000796257
RCV000806929
RCV000813946
RCV000803093
RCV000990881
RCV000990883
RCV001049687
RCV001379325
RCV001215698
RCV001238546
RCV001237602
RCV001247321
RCV003311971
RCV003311976
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
ATP7A-realted disorder Uncertain significance rs2149083027 RCV002245273
Au-Kline syndrome Uncertain significance rs1557231883 RCV003330103
Charcot-Marie-Tooth disease type 2 Uncertain significance rs2149114100 RCV002221640
Ehlers-Danlos syndrome Conflicting classifications of pathogenicity; Uncertain significance; Benign; Likely benign rs2077718812, rs1557234537, rs2149109593, rs2234938, rs2228447, rs143907597, rs138958687, rs139781067, rs368917354, rs370736173, rs61747968, rs1030215501, rs189353691, rs368622356, rs1557239138
View all (11 more)
RCV002278082
RCV002278119
RCV002278137
RCV002277300
RCV002277452
RCV002277449
RCV002277450
RCV002277451
RCV002277594
RCV002277595
RCV002278303
RCV002279204
RCV002279185
RCV002279202
RCV002279348
RCV002279346
RCV002279347
RCV002279462
RCV002279500
RCV002279531
RCV002279544
RCV002279557
RCV002279589
RCV002279621
RCV002276673
RCV002277140
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 22695177
ACTH Secreting Pituitary Adenoma Associate 35634489
Amyotrophic Lateral Sclerosis Associate 22210628, 31959876, 37849306
Arthritis Rheumatoid Associate 37547319
Breast Neoplasms Associate 24504069, 27926520, 29269484, 35996075, 37027423
Carcinogenesis Associate 37885090
Carcinoma Hepatocellular Associate 33146201, 36502594, 37464443, 37885090
Carcinoma Non Small Cell Lung Associate 22304828, 29970670
Central Nervous System Infections Associate 31921404
Cerebellar Diseases Associate 26242992