Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
538
Gene name Gene Name - the full gene name approved by the HGNC.
ATPase copper transporting alpha
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
ATP7A
Synonyms (NCBI Gene) Gene synonyms aliases
DSMAX, HMNX, MK, MNK, SMAX3
Chromosome Chromosome number
X
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
Xq21.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a transmembrane protein that functions in copper transport across membranes. This protein is localized to the trans Golgi network, where it is predicted to supply copper to copper-dependent enzymes in the secretory pathway. It relocalize
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs67273048 G>A Pathogenic Coding sequence variant, stop gained, intron variant
rs72554636 C>T Pathogenic Coding sequence variant, stop gained, intron variant
rs72554638 C>A,T Conflicting-interpretations-of-pathogenicity Coding sequence variant, stop gained, intron variant, synonymous variant
rs72554639 G>C Likely-pathogenic Coding sequence variant, intron variant, missense variant
rs72554640 C>T Pathogenic Coding sequence variant, stop gained, intron variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT018615 hsa-miR-335-5p Microarray 18185580
MIRT019495 hsa-miR-148b-3p Microarray 17612493
MIRT021461 hsa-miR-9-5p Microarray 17612493
MIRT023385 hsa-miR-122-5p Microarray 17612493
MIRT044676 hsa-miR-320a CLASH 23622248
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000166 Function Nucleotide binding IEA
GO:0001568 Process Blood vessel development IEA
GO:0001568 Process Blood vessel development ISS
GO:0001836 Process Release of cytochrome c from mitochondria IEA
GO:0001974 Process Blood vessel remodeling IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
300011 869 ENSG00000165240
Protein
UniProt ID Q04656
Protein name Copper-transporting ATPase 1 (EC 7.2.2.8) (Copper pump 1) (Menkes disease-associated protein)
Protein function ATP-driven copper (Cu(+)) ion pump that plays an important role in intracellular copper ion homeostasis (PubMed:10419525, PubMed:11092760, PubMed:28389643). Within a catalytic cycle, acquires Cu(+) ion from donor protein on the cytoplasmic side
PDB 1AW0 , 1KVI , 1KVJ , 1Q8L , 1S6O , 1S6U , 1Y3J , 1Y3K , 1YJR , 1YJT , 1YJU , 1YJV , 2AW0 , 2G9O , 2GA7 , 2K1R , 2KIJ , 2KMV , 2KMX , 3CJK , 5T7L , 7LU8
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00403 HMA 11 72 Heavy-metal-associated domain Domain
PF00403 HMA 174 235 Heavy-metal-associated domain Domain
PF00403 HMA 280 340 Heavy-metal-associated domain Domain
PF00403 HMA 380 441 Heavy-metal-associated domain Domain
PF00403 HMA 492 552 Heavy-metal-associated domain Domain
PF00403 HMA 567 628 Heavy-metal-associated domain Domain
PF00122 E1-E2_ATPase 814 1022 Family
PF00702 Hydrolase 1038 1313 Domain
Tissue specificity TISSUE SPECIFICITY: Widely expressed including in heart, brain, lung, muscle, kidney, pancreas, and to a lesser extent placenta (PubMed:8490646, PubMed:8490659). Expressed in fibroblasts, aortic smooth muscle cells, aortic endothelial cells and umbilical
Sequence
MDPSMGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPK
TLQEAIDDMGFD
AVIHNPDPLPVLTDTLFLTVTASLTLPWDHIQSTLLKTKGVTDIKIYP
QKRTVAVTIIPSIVNANQIKELVPELSLDTGTLEKKSGACEDHSMAQAGEVVLKMKVEGM
TCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFP
AFVKK
QPKYLKLGAIDVERLKNTPVKSSEGSQQRSPSYTNDSTATFIIDGMHCKSCVSNIESTLS
ALQYVSSIVVSLENRSAIVKYNASSVTPESLRKAIEAVSP
GLYRVSITSEVESTSNSPSS
SSLQKIPLNVVSQPLTQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVE
YDPLLTSPETLRGAIEDMGFD
ATLSDTNEPLVVIAQPSSEMPLLTSTNEFYTKGMTPVQD
KEEGKNSSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPP
MIAEFIRELGFG
ATVIENADEGDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA
TNKAHIKYDPEIIGPRDIIHTIESLGFE
ASLVKKDRSASHLDHKREIRQWRRSFLVSLFF
CIPVMGLMIYMMVMDHHFATLHHNQNMSKEEMINLHSSMFLERQILPGLSVMNLLSFLLC
VPVQFFGGWYFYIQAYKALKHKTANMDVLIVLATTIAFAYSLIILLVAMYERAKVNPITF
FDTPPMLFVFIALGRWLEHIAKGKTSEALAKLISLQATEATIVTLDSDNILLSEEQVDVE
LVQRGDIIKVVPGGKFPVDGRVIEGHSMVDESLITGEAMPVAKKPGSTVIAGSINQNGSL
LICATHVGADTTLSQIVKLVEEAQTSKAPIQQFADKLSGYFVPFIVFVSIATLLVWIVIG
FLNFEIVETYFPGYNRSISRTETIIRFAFQASITVLCIACPCSLGLATPTAVMVGTGVGA
QN
GILIKGGEPLEMAHKVKVVVFDKTGTITHGTPVVNQVKVLTESNRISHHKILAIVGTA
ESNSEHPLGTAITKYCKQELDTETLGTCIDFQVVPGCGISCKVTNIEGLLHKNNWNIEDN
NIKNASLVQIDASNEQSSTSSSMIIDAQISNALNAQQYKVLIGNREWMIRNGLVINNDVN
DFMTEHERKGRTAVLVAVDDELCGLIAIADTVKPEAELAIHILKSMGLEVVLMTGDNSKT
ARSIASQVGITKVFAEVLPSHKVAKVKQLQEEGKRVAMVGDGINDSPALAMAN
VGIAIGT
GTDVAIEAADVVLIRNDLLDVVASIDLSRKTVKRIRINFVFALIYNLVGIPIAAGVFMPI
GLVLQPWMGSAAMAASSVSVVLSSLFLKLYRKPTYESYELPARSQIGQKSPSEISVHVGI
DDTSRNSPKLGLLDRIVNYSRASINSLLSDKRSLNSVVTSEPDKHSLLVGDFREDDDTAL
Sequence length 1500
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Platinum drug resistance
Mineral absorption
  Ion influx/efflux at host-pathogen interface
Ion transport by P-type ATPases
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Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Charcot-Marie-Tooth Disease Charcot-Marie-Tooth Disease rs267606672 N/A
Cutis Laxa, X-Linked cutis laxa, x-linked rs151340631, rs797045344, rs151340632 N/A
Menkes Kinky Hair Syndrome Menkes kinky-hair syndrome rs797045373, rs797045343, rs1603391127, rs267606672, rs797045385, rs797045353, rs797045333, rs797045396, rs797045363, rs797045374, rs797045344, rs794729231, rs797045386, rs797045354, rs797045336
View all (73 more)
N/A
Spinal Muscular Atrophy, X-Linked x-linked distal spinal muscular atrophy type 3 rs1557236729, rs267606672 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Ehlers-Danlos Syndrome ehlers-danlos syndrome N/A N/A ClinVar
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Abnormalities Drug Induced Associate 22695177
ACTH Secreting Pituitary Adenoma Associate 35634489
Amyotrophic Lateral Sclerosis Associate 22210628, 31959876, 37849306
Arthritis Rheumatoid Associate 37547319
Breast Neoplasms Associate 24504069, 27926520, 29269484, 35996075, 37027423
Carcinogenesis Associate 37885090
Carcinoma Hepatocellular Associate 33146201, 36502594, 37464443, 37885090
Carcinoma Non Small Cell Lung Associate 22304828, 29970670
Central Nervous System Infections Associate 31921404
Cerebellar Diseases Associate 26242992