Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
53335
Gene name Gene Name - the full gene name approved by the HGNC.
BCL11 transcription factor A
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
BCL11A
Synonyms (NCBI Gene) Gene synonyms aliases
CTIP1, DILOS, EVI9, HBFQTL5, SMARCM1, ZNF856
Chromosome Chromosome number
2
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
2p16.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a C2H2 type zinc-finger protein by its similarity to the mouse Bcl11a/Evi9 protein. The corresponding mouse gene is a common site of retroviral integration in myeloid leukemia, and may function as a leukemia disease gene, in part, throug
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs11886868 C>T Likely-pathogenic, benign Intron variant
rs761909641 ->G Pathogenic Frameshift variant, coding sequence variant, intron variant
rs768799046 ->G,GGGG,GGGTTTTGAAGGGGGGGGGGGGGGGG Pathogenic Frameshift variant, intron variant, coding sequence variant
rs886037864 T>G Pathogenic Coding sequence variant, genic upstream transcript variant, missense variant, upstream transcript variant, 5 prime UTR variant
rs886037865 C>A Pathogenic Coding sequence variant, genic upstream transcript variant, missense variant, upstream transcript variant, 5 prime UTR variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT019481 hsa-miR-148b-3p Microarray 17612493
MIRT019603 hsa-miR-340-5p Sequencing 20371350
MIRT020396 hsa-miR-29c-3p Sequencing 20371350
MIRT026052 hsa-miR-196a-5p Sequencing 20371350
MIRT028335 hsa-miR-32-5p Sequencing 20371350
Transcription factors
Transcription factor Regulation Reference
FOXQ1 Activation 20145154
SIRT1 Repression 15639232
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0000122 Process Negative regulation of transcription by RNA polymerase II IDA 19153051
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA 21873635
GO:0000978 Function RNA polymerase II cis-regulatory region sequence-specific DNA binding IDA 19153051
GO:0001227 Function DNA-binding transcription repressor activity, RNA polymerase II-specific IDA 19153051
GO:0003700 Function DNA-binding transcription factor activity IBA 21873635
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
606557 13221 ENSG00000119866
Protein
UniProt ID Q9H165
Protein name BCL11 transcription factor A (B-cell CLL/lymphoma 11A) (B-cell lymphoma/leukemia 11A) (BCL-11A) (COUP-TF-interacting protein 1) (Ecotropic viral integration site 9 protein homolog) (EVI-9) (Zinc finger protein 856)
Protein function Transcription factor (PubMed:16704730, PubMed:29606353). Associated with the BAF SWI/SNF chromatin remodeling complex (PubMed:23644491, PubMed:39607926). Binds to the 5'-TGACCA-3' sequence motif in regulatory regions of target genes, including a
PDB 5VTB , 6KI6 , 6U9Q , 8DTN , 8DTU , 8THO , 8TLO , 9B4P , 9BV0
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00096 zf-C2H2 378 399 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 405 427 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 742 764 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 770 792 Zinc finger, C2H2 type Domain
PF00096 zf-C2H2 800 823 Zinc finger, C2H2 type Domain
Tissue specificity TISSUE SPECIFICITY: Expressed at high levels in brain, spleen thymus, bone marrow and testis. Expressed in CD34-positive myeloid precursor cells, B-cells, monocytes and megakaryocytes. Expression is tightly regulated during B-cell development. {ECO:000026
Sequence
MSRRKQGKPQHLSKREFSPEPLEAILTDDEPDHGPLGAPEGDHDLLTCGQCQMNFPLGDI
LIFIEHKRKQCNGSLCLEKAVDKPPSPSPIEMKKASNPVEVGIQVTPEDDDCLSTSSRGI
CPKQEHIADKLLHWRGLSSPRSAHGALIPTPGMSAEYAPQGICKDEPSSYTCTTCKQPFT
SAWFLLQHAQNTHGLRIYLESEHGSPLTPRVGIPSGLGAECPSQPPLHGIHIADNNPFNL
LRIPGSVSREASGLAEGRFPPTPPLFSPPPRHHLDPHRIERLGAEEMALATHHPSAFDRV
LRLNPMAMEPPAMDFSRRLRELAGNTSSPPLSPGRPSPMQRLLQPFQPGSKPPFLATPPL
PPLQSAPPPSQPPVKSKSCEFCGKTFKFQSNLVVHRRSHTGEKPYKCNLCDHACTQASKL
KRHMKTH
MHKSSPMTVKSDDGLSTASSPEPGTSDLVGSASSALKSVVAKFKSENDPNLIP
ENGDEEEEEDDEEEEEEEEEEEEELTESERVDYGFGLSLEAARHHENSSRGAVVGVGDES
RALPDVMQGMVLSSMQHFSEAFHQVLGEKHKRGHLAEAEGHRDTCDEDSVAGESDRIDDG
TVNGRGCSPGESASGGLSKKLLLGSPSSLSPFSKRIKLEKEFDLPPAAMPNTENVYSQWL
AGYAASRQLKDPFLSFGDSRQSPFASSSEHSSENGSLRFSTPPGELDGGISGRSGTGSGG
STPHISGPGPGRPSSKEGRRSDTCEYCGKVFKNCSNLTVHRRSHTGERPYKCELCNYACA
QSSKLTRHMKTH
GQVGKDVYKCEICKMPFSVYSTLEKHMKKWHSDRVLNNDIKTE
Sequence length 835
Interactions View interactions
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Adenocarcinoma Adenoid Cystic Carcinoma rs121913530, rs886039394, rs121913474 16762588
Agenesis of corpus callosum Agenesis of corpus callosum rs754914260, rs1057519053, rs1057519056, rs1057519054, rs1057519055, rs1057519057, rs1384496494, rs1599017933
Anemia Anemia, Sickle Cell rs118204044, rs118204045, rs118204046, rs121918330, rs869320719, rs869312029, rs121918332, rs869320724, rs767094129, rs786205058, rs786205059, rs137853119, rs137853120, rs137853121, rs1384933966
View all (89 more)
21326311, 25372704, 25042611, 23406172
Apraxia Apraxias, Ideational Apraxia, Apraxia of Phonation, Apraxia, Verbal, Apraxia, Oral, Apraxia, Developmental Verbal rs121908377, rs121908378, rs1135401820, rs1178491246, rs1584969672 27120335
Unknown
Disease term Disease name Evidence References Source
Attention Deficit Hyperactivity Disorder Attention Deficit Hyperactivity Disorder GWAS
Ovarian cancer Ovarian cancer Conditional KD of IL6 in the OCCA xenograft model delays tumor growth GWAS, CBGDA
Metabolic Syndrome Metabolic Syndrome GWAS
Psoriasis Psoriasis GWAS
Associations from Text Mining
Disease Name Relationship Type References
Adenocarcinoma Associate 37372998
Alcoholism Associate 28981154
alpha Thalassemia Associate 19696200
Alzheimer Disease Associate 30180184
Anemia Hemolytic Associate 29879141
Anemia Sickle Cell Associate 18245381, 18667698, 21068433, 22139998, 22801970, 24667352, 25084696, 25703683, 26393293, 26849705, 26888013, 27077760, 27377501, 27838552, 28280727
View all (16 more)
Apraxias Associate 27120335, 28960836
Arthritis Rheumatoid Associate 24213554
Autism Spectrum Disorder Associate 25938782
Autistic Disorder Associate 30755392, 36807877