Gene Gene information from NCBI Gene database.
Entrez ID 5332
Gene name Phospholipase C beta 4
Gene symbol PLCB4
Synonyms (NCBI Gene)
ARCND2ARCND2AARCND2BPI-PLC
Chromosome 20
Chromosome location 20p12.3-p12.2
Summary The protein encoded by this gene catalyzes the formation of inositol 1,4,5-trisphosphate and diacylglycerol from phosphatidylinositol 4,5-bisphosphate. This reaction uses calcium as a cofactor and plays an important role in the intracellular transduction
SNPs SNP information provided by dbSNP.
11
SNP ID Visualize variation Clinical significance Consequence
rs387907179 A>C,G Pathogenic Coding sequence variant, missense variant
rs397514480 A>G Pathogenic Coding sequence variant, missense variant
rs397514481 G>A,T Likely-pathogenic, pathogenic Coding sequence variant, missense variant
rs397514482 C>A,T Pathogenic Coding sequence variant, missense variant
rs397514483 A>C Pathogenic Coding sequence variant, missense variant
miRNA miRNA information provided by mirtarbase database.
200
miRTarBase ID miRNA Experiments Reference
MIRT021355 hsa-miR-9-5p Microarray 17612493
MIRT028848 hsa-miR-26b-5p Microarray 19088304
MIRT439952 hsa-miR-412-3p HITS-CLIP 24374217
MIRT439952 hsa-miR-412-3p HITS-CLIP 24374217
MIRT731963 hsa-miR-371a-3p Luciferase reporter assayWestern blot 27484502
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
22
GO ID Ontology Definition Evidence Reference
GO:0004435 Function Phosphatidylinositol-4,5-bisphosphate phospholipase C activity IBA
GO:0004435 Function Phosphatidylinositol-4,5-bisphosphate phospholipase C activity IEA
GO:0004629 Function Phospholipase C activity IEA
GO:0004629 Function Phospholipase C activity TAS 8530101
GO:0005509 Function Calcium ion binding IEA
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
600810 9059 ENSG00000101333
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q15147
Protein name 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 (EC 3.1.4.11) (Phosphoinositide phospholipase C-beta-4) (Phospholipase C-beta-4) (PLC-beta-4)
Protein function Activated phosphatidylinositol-specific phospholipase C enzymes catalyze the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) involved in G-protein coupled receptor signaling pathways. PLCB
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF17787 PH_14 12 140 PH domain Domain
PF09279 EF-hand_like 209 305 Phosphoinositide-specific phospholipase C, efhand-like Domain
PF00388 PI-PLC-X 315 464 Phosphatidylinositol-specific phospholipase C, X domain Family
PF00387 PI-PLC-Y 565 679 Phosphatidylinositol-specific phospholipase C, Y domain Family
PF00168 C2 701 803 C2 domain Domain
PF06631 DUF1154 913 955 Protein of unknown function (DUF1154) Family
Tissue specificity TISSUE SPECIFICITY: Preferentially expressed in the retina.
Sequence
MAKPYEFNWQKEVPSFLQEGAVFDRYEEESFVFEPNCLFKVDEFGFFLTWRSEGKEGQVL
ECSLINSIRSGAIPKDPKILAALEAVGKSENDLEGRIVCVCSGTDLVNISFTYMVAENPE
VTKQWVEGLRSIIHNFRANN
VSPMTCLKKHWMKLAFMTNTNGKIPVRSITRTFASGKTEK
VIFQALKELGLPSGKNDEIEPTAFSYEKFYELTQKICPRTDIEDLFKKINGDKTDYLTVD
QLVSFLNEHQRDPRLNEILFPFYDAKRAMQIIEMYEPDEDLKKKGLISSDGFCRYLMSDE
NAPVF
LDRLELYQEMDHPLAHYFISSSHNTYLTGRQFGGKSSVEMYRQVLLAGCRCVELD
CWDGKGEDQEPIITHGKAMCTDILFKDVIQAIKETAFVTSEYPVILSFENHCSKYQQYKM
SKYCEDLFGDLLLKQALESHPLEPGRALPSPNDLKRKILIKNKR
LKPEVEKKQLEALRSM
MEAGESASPANILEDDNEEEIESADQEEEAHPEFKFGNELSADDLGHKEAVANSVKKGLV
TVEDEQAWMASYKYVGATTNIHPYLSTMINYAQPVKFQGFHVAEERNIHYNMSSFNESVG
LGYLKTHAIEFVNYNKRQMSRIYPKGGRVDSSNYMPQIFWNAGCQMVSLNYQTPDLAMQL
NQGKFEYNGSCGYLLKPDF
MRRPDRTFDPFSETPVDGVIAATCSVQVISGQFLSDKKIGT
YVEVDMYGLPTDTIRKEFRTRMVMNNGLNPVYNEESFVFRKVILPDLAVLRIAVYDDNNK
LIGQRILPLDGLQAGYRHISLRN
EGNKPLSLPTIFCNIVLKTYVPDGFGDIVDALSDPKK
FLSITEKRADQMRAMGIETSDIADVPSDTSKNDKKGKANTAKANVTPQSSSELRPTTTAA
LASGVEAKKGIELIPQVRIEDLKQMKAYLKHLKKQQKELNSLKKKHAKEHSTMQKLHCTQ
VDKIVAQYDKEKSTHEKILEKAMKKKGGSNCLEMKKETEIKIQTLTSDHKSKVKEIVAQH
TKEWSEMINTHSAEEQEIRDLHLSQQCELLKKLLINAHEQQTQQLKLSHDRESKEMRAHQ
AKISMENSKAISQDKSIKNKAERERRVRELNSSNTKKFLEERKRLAMKQSKEMDQLKKVQ
LEHLEFLEKQNEQAKEMQQMVKLEAEMDRRPATVV
Sequence length 1175
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG  Reactome
  Inositol phosphate metabolism
Metabolic pathways
Rap1 signaling pathway
Calcium signaling pathway
cGMP-PKG signaling pathway
Chemokine signaling pathway
Phosphatidylinositol signaling system
Sphingolipid signaling pathway
Phospholipase D signaling pathway
Hormone signaling
Adrenergic signaling in cardiomyocytes
Vascular smooth muscle contraction
Wnt signaling pathway
Apelin signaling pathway
Gap junction
Platelet activation
Neutrophil extracellular trap formation
NOD-like receptor signaling pathway
Circadian entrainment
Long-term potentiation
Retrograde endocannabinoid signaling
Glutamatergic synapse
Cholinergic synapse
Serotonergic synapse
Dopaminergic synapse
Long-term depression
Taste transduction
Inflammatory mediator regulation of TRP channels
Insulin secretion
GnRH signaling pathway
Estrogen signaling pathway
Melanogenesis
Thyroid hormone synthesis
Thyroid hormone signaling pathway
Oxytocin signaling pathway
Glucagon signaling pathway
Renin secretion
Aldosterone synthesis and secretion
Relaxin signaling pathway
Cortisol synthesis and secretion
Parathyroid hormone synthesis, secretion and action
GnRH secretion
AGE-RAGE signaling pathway in diabetic complications
Cushing syndrome
Growth hormone synthesis, secretion and action
Endocrine and other factor-regulated calcium reabsorption
Salivary secretion
Gastric acid secretion
Pancreatic secretion
Carbohydrate digestion and absorption
Alzheimer disease
Huntington disease
Spinocerebellar ataxia
Pathways of neurodegeneration - multiple diseases
Shigellosis
Chagas disease
African trypanosomiasis
Amoebiasis
Human cytomegalovirus infection
Pathways in cancer
Diabetic cardiomyopathy
Lipid and atherosclerosis
  PLC beta mediated events
Synthesis of IP3 and IP4 in the cytosol
G alpha (q) signalling events
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
186
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Abnormal facial shape Likely pathogenic; Pathogenic rs1568763104 RCV001526544
Auriculocondylar syndrome Pathogenic rs397514481 RCV001249753
Auriculocondylar syndrome 1 Pathogenic rs387907179, rs397514480, rs397514481, rs397514482, rs397514483 RCV000191052
RCV000191054
RCV000191053
RCV000191051
RCV000191055
Auriculocondylar syndrome 2 Likely pathogenic; Pathogenic rs2037778050, rs2516002006, rs397514480, rs387907179, rs397514481, rs397514482, rs397514483, rs1568763104, rs397514769, rs397514770, rs397514771 RCV001332615
RCV002284990
RCV000024333
RCV000024334
RCV000024335
RCV000024336
RCV000024337
RCV000785953
RCV000054838
RCV000054839
RCV000054840
RCV000054841
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
Cervical cancer Benign rs3037097 RCV005867160
Colorectal cancer Benign rs3037097, rs145071397 RCV005867162
RCV005869898
Gastric cancer Benign rs3037097, rs6056623, rs17481185 RCV005868259
RCV005920249
RCV005923649
RCV005871478
Long QT syndrome Likely benign rs759189106 RCV000190184
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Associate 31080817
Adenoma Islet Cell Associate 30575306
Auriculo condylar syndrome Associate 22560091, 24268655, 30806792
Bone Diseases Developmental Associate 29122926
Breast Neoplasms Associate 29512753
Carcinogenesis Associate 34905385
Carcinoma Hepatocellular Associate 30896816
Carcinoma Non Small Cell Lung Associate 31080817
Carcinoma Pancreatic Ductal Associate 35255936
Colonic Neoplasms Associate 32420374