Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
5317
Gene name Gene Name - the full gene name approved by the HGNC.
Plakophilin 1
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PKP1
Synonyms (NCBI Gene) Gene synonyms aliases
B6P, EDSFS
Chromosome Chromosome number
1
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
1q32.1
Summary Summary of gene provided in NCBI Entrez Gene.
This gene encodes a member of the arm-repeat (armadillo) and plakophilin gene families. Plakophilin proteins contain numerous armadillo repeats, localize to cell desmosomes and nuclei, and participate in linking cadherins to intermediate filaments in the
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs121918354 C>T Pathogenic Stop gained, coding sequence variant
rs483352688 C>T Conflicting-interpretations-of-pathogenicity Coding sequence variant, missense variant
rs1131691647 C>T Pathogenic Stop gained, coding sequence variant
rs1553275192 C>T Likely-pathogenic Coding sequence variant, stop gained
rs1558193923 A>G,T Pathogenic Splice acceptor variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT019417 hsa-miR-148b-3p Microarray 17612493
MIRT639435 hsa-miR-3973 HITS-CLIP 23824327
MIRT639434 hsa-miR-520g-3p HITS-CLIP 23824327
MIRT639433 hsa-miR-520h HITS-CLIP 23824327
MIRT639432 hsa-miR-4328 HITS-CLIP 23824327
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001533 Component Cornified envelope IEA
GO:0001533 Component Cornified envelope IEA
GO:0001533 Component Cornified envelope TAS
GO:0002159 Process Desmosome assembly IEA
GO:0002159 Process Desmosome assembly ISS
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
601975 9023 ENSG00000081277
Protein
UniProt ID Q13835
Protein name Plakophilin-1 (Band 6 protein) (B6P)
Protein function A component of desmosome cell-cell junctions which are required for positive regulation of cellular adhesion (PubMed:23444369). Plays a role in desmosome protein expression regulation and localization to the desmosomal plaque, thereby maintainin
PDB 1XM9
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00514 Arm 276 316 Armadillo/beta-catenin-like repeat Repeat
Tissue specificity TISSUE SPECIFICITY: [Isoform 1]: Expressed in stratified squamous, complex, glandular duct and bladder epithelia (at protein level). {ECO:0000269|PubMed:9369526}.; TISSUE SPECIFICITY: [Isoform 2]: Widely expressed (at protein level). {ECO:0000269|PubMed:9
Sequence
MNHSPLKTALAYECFQDQDNSTLALPSDQKMKTGTSGRQRVQEQVMMTVKRQKSKSSQSS
TLSHSNRGSMYDGLADNYNYGTTSRSSYYSKFQAGNGSWGYPIYNGTLKREPDNRRFSSY
SQMENWSRHYPRGSCNTTGAGSDICFMQKIKASRSEPDLYCDPRGTLRKGTLGSKGQKTT
QNRYSFYSTCSGQKAIKKCPVRPPSCASKQDPVYIPPISCNKDLSFGHSRASSKICSEDI
ECSGLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN
QNVQQAAAGALRNLVF
RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST
DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRKRLGMRELL
ALVPQRATSSRVNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLH
NLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS
GWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQI
ARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS
ACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGV
LRQQGFDRNMLGTLAGANSLRNFTSRF
Sequence length 747
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    Apoptotic cleavage of cell adhesion proteins
Neutrophil degranulation
Keratinization
Formation of the cornified envelope
<
Associated diseases Disease associations categorized as Causal (pathogenic variants), Unknown (uncertain genetic evidence), or Text Mining (literature-based associations)
Causal Diseases caused by PATHOGENIC or LIKELY PATHOGENIC variants from ClinVar only
Disease merge term Disease name dbSNP ID References
Epidermolysis Bullosa Simplex Epidermolysis bullosa simplex due to plakophilin deficiency rs121918354, rs1558193923, rs1553275192, rs1571564381, rs1571557821 N/A
Unknown Includes: (1) ClinVar NON-pathogenic variants (Uncertain, Benign, Conflicting, VUS), (2) GenCC associations, (3) GWAS associations, (4) CBGDA evidence-based associations. NOTE: Diseases with pathogenic evidence are excluded to avoid conflicts.
Disease merge term Disease name Evidence References Source
Panic Disorder Panic disorder N/A N/A GWAS
Associations from Text Mining Disease associations identified through Pubtator
Disease Name Relationship Type References
Adenocarcinoma Inhibit 20348237, 22170739
Adenocarcinoma Associate 31809668
Adenocarcinoma of Lung Associate 32360590
Barrett Esophagus Associate 22170739
Breast Neoplasms Associate 32495884
Carcinoma Basal Cell Associate 9008225
Carcinoma Non Small Cell Lung Associate 23869193
Carcinoma Squamous Cell Associate 31809668
Ectodermal Dysplasia Skin Fragility Syndrome Associate 10951270, 12839569, 15086548, 16159729, 16632867, 21727700
Esophageal Neoplasms Associate 19472401