Gene Gene information from NCBI Gene database.
Entrez ID 5310
Gene name Polycystin 1, transient receptor potential channel interacting
Gene symbol PKD1
Synonyms (NCBI Gene)
PBPPC1Pc-1TRPP1eliosin
Chromosome 16
Chromosome location 16p13.3
Summary This gene encodes a member of the polycystin protein family. The encoded glycoprotein contains a large N-terminal extracellular region, multiple transmembrane domains and a cytoplasmic C-tail. It is an integral membrane protein that functions as a regulat
SNPs SNP information provided by dbSNP.
245
SNP ID Visualize variation Clinical significance Consequence
rs1616940 A>G,T Likely-pathogenic, pathogenic-likely-pathogenic, uncertain-significance Missense variant, upstream transcript variant, genic upstream transcript variant, coding sequence variant
rs2855341 C>T Likely-pathogenic Missense variant, upstream transcript variant, genic upstream transcript variant, coding sequence variant
rs34495017 C>-,CC Pathogenic Frameshift variant, coding sequence variant
rs58598099 A>G Likely-pathogenic Upstream transcript variant, missense variant, genic upstream transcript variant, coding sequence variant
rs138871063 G>A,C Pathogenic Synonymous variant, coding sequence variant, stop gained
miRNA miRNA information provided by mirtarbase database.
524
miRTarBase ID miRNA Experiments Reference
MIRT043090 hsa-miR-324-5p CLASH 23622248
MIRT041636 hsa-miR-484 CLASH 23622248
MIRT040353 hsa-miR-615-3p CLASH 23622248
MIRT438843 hsa-miR-451a qRT-PCR 23294929
MIRT438840 hsa-miR-200c-3p qRT-PCR 23294929
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
124
GO ID Ontology Definition Evidence Reference
GO:0000139 Component Golgi membrane TAS
GO:0001502 Process Cartilage condensation IEA
GO:0001568 Process Blood vessel development IEA
GO:0001701 Process In utero embryonic development IEA
GO:0001701 Process In utero embryonic development ISS
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
601313 9008 ENSG00000008710
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
P98161
Protein name Polycystin-1 (PC1) (Autosomal dominant polycystic kidney disease 1 protein)
Protein function Component of a heteromeric calcium-permeable ion channel formed by PKD1 and PKD2 that is activated by interaction between PKD1 and a Wnt family member, such as WNT3A and WNT9B (PubMed:27214281). Both PKD1 and PKD2 are required for channel activi
PDB 1B4R , 6A70
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF13855 LRR_8 69 127 Leucine rich repeat Repeat
PF01822 WSC 180 261 WSC domain Domain
PF00801 PKD 275 346 PKD domain Domain
PF00059 Lectin_C 425 532 Lectin C-type domain Domain
PF00801 PKD 855 922 PKD domain Domain
PF00801 PKD 1024 1116 PKD domain Domain
PF00801 PKD 1129 1202 PKD domain Domain
PF00801 PKD 1216 1285 PKD domain Domain
PF00801 PKD 1299 1370 PKD domain Domain
PF00801 PKD 1385 1456 PKD domain Domain
PF00801 PKD 1472 1538 PKD domain Domain
PF00801 PKD 1553 1622 PKD domain Domain
PF00801 PKD 1637 1708 PKD domain Domain
PF00801 PKD 1723 1792 PKD domain Domain
PF00801 PKD 1807 1877 PKD domain Domain
PF00801 PKD 1892 1961 PKD domain Domain
PF00801 PKD 1976 2051 PKD domain Domain
PF00801 PKD 2063 2135 PKD domain Domain
PF02010 REJ 2171 2614 REJ domain Family
PF01477 PLAT 3120 3231 PLAT/LH2 domain Domain
PF08016 PKD_channel 3711 4113 Polycystin cation channel Family
Sequence
MPPAAPARLALALGLGLWLGALAGGPGRGCGPCEPPCLCGPAPGAACRVNCSGRGLRTLG
PALRIPADATALDVSHNLLRALDVGLLANLSALAELDISNNKISTLEEGIFANLFNLSEI
NLSGNPF
ECDCGLAWLPRWAEEQQVRVVQPEAATCAGPGSLAGQPLLGIPLLDSGCGEEY
VACLPDNSSGTVAAVSFSAAHEGLLQPEACSAFCFSTGQGLAALSEQGWCLCGAAQPSSA
SFACLSLCSGPPPPPAPTCRG
PTLLQHVFPASPGATLVGPHGPLASGQLAAFHIAAPLPV
TATRWDFGDGSAEVDAAGPAASHRYVLPGRYHVTAVLALGAGSALL
GTDVQVEAAPAALE
LVCPSSVQSDESLDLSIQNRGGSGLEAAYSIVALGEEPARAVHPLCPSDTEIFPGNGHCY
RLVVEKAAWLQAQEQCQAWAGAALAMVDSPAVQRFLVSRVTRSLDVWIGFSTVQGVEVGP
APQGEAFSLESCQNWLPGEPHPATAEHCVRLGPTGWCNTDLCSAPHSYVCEL
QPGGPVQD
AENLLVGAPSGDLQGPLTPLAQQDGLSAPHEPVEVMVFPGLRLSREAFLTTAEFGTQELR
RPAQLRLQVYRLLSTAGTPENGSEPESRSPDNRTQLAPACMPGGRWCPGANICLPLDASC
HPQACANGCTSGPGLPGAPYALWREFLFSVPAGPPAQYSVTLHGQDVLMLPGDLVGLQHD
AGPGALLHCSPAPGHPGPRAPYLSANASSWLPHLPAQLEGTWACPACALRLLAATEQLTV
LLGLRPNPGLRLPGRYEVRAEVGNGVSRHNLSCSFDVVSPVAGLRVIYPAPRDGRLYVPT
NGSALVLQVDSGANATATARWPGGSVSARFENVCPALVATFVPGCPWETNDTLFSVVALP
WLSEGEHVVDVVVENSASRANL
SLRVTAEEPICGLRATPSPEARVLQGVLVRYSPVVEAG
SDMVFRWTINDKQSLTFQNVVFNVIYQSAAVFKLSLTASNHVSNVTVNYNVTVERMNRMQ
GLQVSTVPAVLSPNATLALTAGVLVDSAVEVAFLWTFGDGEQALHQFQPPYNESFPVPDP
SVAQVLVEHNVMHTYAAPGEYLLTVLASNAFENLTQ
QVPVSVRASLPSVAVGVSDGVLVA
GRPVTFYPHPLPSPGGVLYTWDFGDGSPVLTQSQPAANHTYASRGTYHVRLEVNNTVSGA
AA
QADVRVFEELRGLSVDMSLAVEQGAPVVVSAAVQTGDNITWTFDMGDGTVLSGPEATV
EHVYLRAQNCTVTVGAASPAGHLAR
SLHVLVFVLEVLRVEPAACIPTQPDARLTAYVTGN
PAHYLFDWTFGDGSSNTTVRGCPTVTHNFTRSGTFPLALVLSSRVNRAHY
FTSICVEPEV
GNVTLQPERQFVQLGDEAWLVACAWPPFPYRYTWDFGTEEAAPTRARGPEVTFIYRDPGS
YLVTVTASNNISAAND
SALVEVQEPVLVTSIKVNGSLGLELQQPYLFSAVGRGRPASYLW
DLGDGGWLEGPEVTHAYNSTGDFTVRVAGWNEVSRSEA
WLNVTVKRRVRGLVVNASRTVV
PLNGSVSFSTSLEAGSDVRYSWVLCDRCTPIPGGPTISYTFRSVGTFNIIVTAENEVGSA
QD
SIFVYVLQLIEGLQVVGGGRYFPTNHTVQLQAVVRDGTNVSYSWTAWRDRGPALAGSG
KGFSLTVLEAGTYHVQLRATNMLGSAWA
DCTMDFVEPVGWLMVAASPNPAAVNTSVTLSA
ELAGGSGVVYTWSLEEGLSWETSEPFTTHSFPTPGLHLVTMTAGNPLGSANA
TVEVDVQV
PVSGLSIRASEPGGSFVAAGSSVPFWGQLATGTNVSWCWAVPGGSSKRGPHVTMVFPDAG
TFSIRLNASNAVSWVSA
TYNLTAEEPIVGLVLWASSKVVAPGQLVHFQILLAAGSAVTFR
LQVGGANPEVLPGPRFSHSFPRVGDHVVSVRGKNHVSWAQA
QVRIVVLEAVSGLQVPNCC
EPGIATGTERNFTARVQRGSRVAYAWYFSLQKVQGDSLVILSGRDVTYTPVAAGLLEIQV
RAFNALGSENR
TLVLEVQDAVQYVALQSGPCFTNRSAQFEAATSPSPRRVAYHWDFGDGS
PGQDTDEPRAEHSYLRPGDYRVQVNASNLVSFFVA
QATVTVQVLACREPEVDVVLPLQVL
MRRSQRNYLEAHVDLRDCVTYQTEYRWEVYRTASCQRPGRPARVALPGVDVSRPRLVLPR
LALPVGHYCFVFVVSFGDTPLTQSIQANVTVAPERLVPIIEGGSYRVWSDTRDLVLDGSE
SYDPNLEDGDQTPLSFHWACVASTQREAGGCALNFGPRGSSTVTIPRERLAAGVEYTFSL
TVWKAGRKEEATNQTVLIRSGRVPIVSLECVSCKAQAVYEVSRSSYVYLEGRCLNCSSGS
KRGRWAARTFSNKTLVLDETTTSTGSAGMRLVLRRGVLRDGEGYTFTLTVLGRSGEEEGC
ASIRLSPNRPPLGGSCRLFPLGAVHALTTKVHFECTGWHDAEDAGAPLVYALLLRRCRQG
HCEEFCVYKGSLSSYGAVLPPGFRPHFEVGLAVVVQDQLGAAVVALNRSLAITLPEPNGS
ATGLTVWLHGLTASVLPGLLRQADPQHVIEYSLA
LVTVLNEYERALDVAAEPKHERQHRA
QIRKNITETLVSLRVHTVDDIQQIAAALAQCMGPSRELVCRSCLKQTLHKLEAMMLILQA
ETTAGTVTPTAIGDSILNITGDLIHLASSDVRAPQPSELGAESPSRMVASQAYNLTSALM
RILMRSRVLNEEPLTLAGEEIVAQGKRSDPRSLLCYGGAPGPGCHFSIPEAFSGALANLS
DVVQLIFLVDSNPFPFGYISNYTVSTKVASMAFQTQAGAQIPIERLASERAITVKVPNNS
DWAARGHRSSANSANSVVVQPQASVGAVVTLDSSNPAAGLHLQLNYTLLDGHYLSEEPEP
YLAVYLHSEPRPNEHNCSASRRIRPESLQGADHRPYTFFISPGSRDPAGSYHLNLSSHFR
WSALQVSVGLYTSLCQYFSEEDMVWRTEGLLPLEETSPRQAVCLTRHLTAFGASLFVPPS
HVRFVFPEPTADVNYIVMLTCAVCLVTYMVMAAILHKLDQLDASRGRAIPFCGQRGRFKY
EILVKTGWGRGSGTTAHVGIMLYGVDSRSGHRHLDGDRAFHRNSLDIFRIATPHSLGSVW
KIRVWHDNKGLSPAWFLQHVIVRDLQTARSAFFLVNDWLSVETEANGGLVE
KEVLAASDA
ALLRFRRLLVAELQRGFFDKHIWLSIWDRPPRSRFTRIQRATCCVLLICLFLGANAVWYG
AVGDSAYSTGHVSRLSPLSVDTVAVGLVSSVVVYPVYLAILFLFRMSRSKVAGSPSPTPA
GQQVLDIDSCLDSSVLDSSFLTFSGLHAEQAFVGQMKSDLFLDDSKSLVCWPSGEGTLSW
PDLLSDPSIVGSNLRQLARGQAGHGLGPEEDGFSLASPYSPAKSFSASDEDLIQQVLAEG
VSSPAPTQDTHMETDLLSSLSSTPGEKTETLALQRLGELGPPSPGLNWEQPQAARLSRTG
LVEGLRKRLLPAWCASLAHGLSLLLVAVAVAVSGWVGASFPPGVSVAWLLSSSASFLASF
LGWEPLKVLLEALYFSLVAKRLHPDEDDTLVESPAVTPVSARVPRVRPPHGFALFLAKEE
ARKVKRLHGMLRSLLVYMLFLLVTLLASYGDASCHGHAYRLQSAIKQELHSRAFLAITRS
EELWPWMAHVLLPYVHGNQSSPELGPPRLRQVRLQEALYPDPPGPRVHTCSAAGGFSTSD
YDVGWESPHNGSGTWAYSAPDLLGAWSWGSCAVYDSGGYVQELGLSLEESRDRLRFLQLH
NWLDNRSRAVFLELTRYSPAVGLHAAVTLRLEFPAAGRALAALSVRPFALRRLSAGLSLP
LLTSVCLLLFAVHFAVAEARTWHREGRWRVLRLGAWARWLLVALTAATALVRLAQLGAAD
RQWTRFVRGRPRRFTSFDQVAQLSSAARGLAASLLFLLLVKAAQQLRFVRQWSVFGKTLC
RALPELLGVTLGLVVLGVAYAQLAILLVSSCVDSLWSVAQALLVLCPGTGLSTLCPAESW
HLSPLLCVGLWALRLWGALRLGAVILRWRYHAL
RGELYRPAWEPQDYEMVELFLRRLRLW
MGLSKVKEFRHKVRFEGMEPLPSRSSRGSKVSPDVPPPSAGSDASHPSTSSSQLDGLSVS
LGRLGTRCEPEPSRLQAVFEALLTQFDRLNQATEDVYQLEQQLHSLQGRRSSRAPAGSSR
GPSPGLRPALPSRLARASRGVDLATGPSRTPLRAKNKVHPSST
Sequence length 4303
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  Reactome
    VxPx cargo-targeting to cilium
Associated diseases Disease associations from ClinVar categorized as Causal (Pathogenic/Likely Pathogenic) or Unknown.
4242
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
3-4 toe syndactyly Likely pathogenic; Pathogenic rs566014072 RCV000415375
Anhydramnios Likely pathogenic rs2151704173 RCV001807676
Autosomal dominant polycystic kidney disease Pathogenic; Likely pathogenic rs2151799399, rs2151772170, rs755972713, rs763199691, rs2151822325, rs541552030, rs2151792059, rs2151788244, rs2151806438, rs2151707040, rs2151813077, rs2092047055, rs2151826530, rs2151675632, rs534630703
View all (74 more)
RCV005361556
RCV001844968
RCV001844969
RCV001844970
RCV001844972
RCV001844973
RCV001844975
RCV001844978
RCV001844979
RCV001844980
RCV001844982
RCV001844983
RCV001844984
RCV001844985
RCV001844989
RCV001844990
RCV001844991
RCV001844992
RCV001844994
RCV001844995
RCV001844997
RCV001844998
RCV001845000
RCV001845001
RCV001845002
RCV001845003
RCV001845004
RCV001845005
RCV001845006
RCV001845008
RCV001845009
RCV001845010
RCV001845012
RCV005361702
RCV003229570
RCV005250240
RCV005356084
RCV003229571
RCV003229574
RCV002463866
RCV002463868
RCV005356140
RCV005250252
RCV001254214
RCV001254254
RCV003993740
RCV003140258
RCV005356399
RCV005356423
RCV005250310
RCV003994680
RCV003994776
RCV005250341
RCV001254205
RCV005250060
RCV004760536
RCV000499512
RCV000500237
RCV000504528
RCV001254257
RCV005250068
RCV001254255
RCV000677622
RCV001254314
RCV005357906
RCV001254281
RCV003229563
RCV005250103
RCV001844846
RCV003229566
RCV005359726
RCV005358158
RCV001254251
RCV005250137
RCV005359893
RCV005250164
RCV003994244
RCV001844854
RCV003229568
RCV005250166
RCV001254317
RCV001254211
RCV001254253
RCV001254236
RCV001254218
RCV001254224
RCV001254302
RCV001254276
RCV005232244
RCV003994255
Autosomal recessive polycystic kidney disease Pathogenic rs1555453872 RCV000501173
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession
- no classification for the single variant rs2151742354, rs2151742388, rs2151766716 -
46,XY disorder of sex development Uncertain significance rs2092594485 RCV003126305
Abnormality of the kidney Uncertain significance rs1057518976 RCV000415037
Achilles tendon contracture Conflicting classifications of pathogenicity rs1555452876 RCV000626725
Associations from Text MiningDisease associations identified through Pubtator
Disease Name Relationship Type References
Acidosis Renal Tubular Associate 10207066
Acromegaly Associate 21744088
Alzheimer Disease Associate 34290017
Ameloblastoma Stimulate 36857877
Anemia Sickle Cell Associate 36646975
Aneurysm Associate 10577909
Anti N Methyl D Aspartate Receptor Encephalitis Associate 33881537
Aortic Aneurysm Thoracic Associate 38002926
Aortic Diseases Associate 38002926
Aortic Dissection Inhibit 28076932