Gene
Entrez ID Entrez Gene ID - the GENE ID in NCBI Gene database.
5264
Gene name Gene Name - the full gene name approved by the HGNC.
Phytanoyl-CoA 2-hydroxylase
Gene symbol Gene Symbol - the official gene symbol approved by the HGNC.
PHYH
Synonyms (NCBI Gene) Gene synonyms aliases
LN1, LNAP1, PAHX, PHYH1, RD
Disease Acronyms (UniProt) Disease acronyms from UniProt database
RD
Chromosome Chromosome number
10
Chromosome location Chromosomal Location - indicates the cytogenetic location of the gene or region on the chromosome.
10p13
Summary Summary of gene provided in NCBI Entrez Gene.
This gene is a member of the PhyH family and encodes a peroxisomal protein that is involved in the alpha-oxidation of 3-methyl branched fatty acids. Specifically, this protein converts phytanoyl-CoA to 2-hydroxyphytanoyl-CoA. Mutations in this gene have b
SNPs SNP information provided by dbSNP.
SNP ID Visualize variation Clinical significance Consequence
rs28939672 G>A,T Pathogenic Intron variant, coding sequence variant, missense variant, stop gained
rs62619919 C>T Conflicting-interpretations-of-pathogenicity, benign-likely-benign, benign, likely-pathogenic Missense variant, coding sequence variant
rs104894173 C>T Pathogenic Intron variant, missense variant, coding sequence variant
rs104894174 C>T Pathogenic Missense variant, coding sequence variant
rs104894178 G>A Pathogenic, likely-pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
miRTarBase ID miRNA Experiments Reference
MIRT050505 hsa-miR-20a-5p CLASH 23622248
MIRT1232567 hsa-miR-3653 CLIP-seq
MIRT1232568 hsa-miR-3658 CLIP-seq
MIRT1232569 hsa-miR-4666-5p CLIP-seq
MIRT1232570 hsa-miR-570 CLIP-seq
Gene ontology (GO) Gene ontology information of associated ontologies with gene provided by GO database.
GO ID Ontology Definition Evidence Reference
GO:0001561 Process Fatty acid alpha-oxidation IBA 21873635
GO:0001561 Process Fatty acid alpha-oxidation IDA 9326939, 16186124
GO:0001561 Process Fatty acid alpha-oxidation TAS
GO:0005515 Function Protein binding IPI 9326939, 10051602, 16189514, 25416956, 25910212, 31515488, 32296183, 32814053
GO:0005739 Component Mitochondrion IEA
Other IDs Other ids provides unique ids of gene in databases such as OMIM, HGNC, ENSEMBLE.
MIM HGNC e!Ensembl
602026 8940 ENSG00000107537
Protein
UniProt ID O14832
Protein name Phytanoyl-CoA dioxygenase, peroxisomal (EC 1.14.11.18) (Phytanic acid oxidase) (Phytanoyl-CoA alpha-hydroxylase) (PhyH)
Protein function Catalyzes the 2-hydroxylation of not only racemic phytanoyl-CoA and the isomers of 3-methylhexadecanoyl-CoA, but also a variety of other mono-branched 3-methylacyl-CoA esters (with a chain length of at least seven carbon atoms) and straight-chai
PDB 2A1X
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF05721 PhyH 61 277 Phytanoyl-CoA dioxygenase (PhyH) Domain
Tissue specificity TISSUE SPECIFICITY: Expressed in liver, kidney, and T-cells, but not in spleen, brain, heart, lung and skeletal muscle.
Sequence
Sequence length 338
Interactions View interactions
Pathways Pathway information has different metabolic/signaling pathways associated with genes.
  KEGG   Reactome
  Peroxisome   Alpha-oxidation of phytanate
Peroxisomal protein import
Associated diseases Disease information provided by ClinVar, GenCC, and GWAS databases.
Causal
Disease term Disease name dbSNP ID References
Cardiomyopathy Cardiomyopathies rs267607003, rs267607002, rs267607004, rs63750743, rs121908333, rs121908334, rs104894655, rs121434420, rs121434421, rs193922674, rs111517471, rs121908987, rs193922384, rs121909374, rs121909377
View all (900 more)
Cataract Cataract rs118203965, rs118203966, rs104893685, rs121908938, rs104894175, rs121909048, rs28937573, rs121909049, rs121909050, rs74315488, rs80358200, rs80358203, rs121434643, rs56141211, rs132630322
View all (150 more)
Developmental regression Developmental regression rs1224421127
Hearing loss Sensorineural Hearing Loss (disorder) rs267607135, rs267606855, rs779841884, rs267606854, rs28942097, rs121908073, rs121908076, rs74315289, rs121908144, rs111033313, rs74315437, rs121908348, rs121908349, rs121908350, rs397515359
View all (184 more)
Unknown
Disease term Disease name Evidence References Source
Congestive heart failure Congestive heart failure ClinVar
Ptosis Blepharoptosis, Ptosis ClinVar
Refsum Disease adult Refsum disease GenCC
Associations from Text Mining
Disease Name Relationship Type References
Carcinoma Hepatocellular Associate 11304581
Carcinoma Renal Cell Inhibit 33468235
Crohn Disease Associate 37543814
Dysbiosis Associate 37543814
Neoplastic Syndromes Hereditary Associate 31513212
Neuroferritinopathy Associate 31513212
Orofacial Cleft 1 Associate 27229527
Refsum Disease Associate 12522768, 15930519, 16186124