Gene Details | GeDiPNet - Complete Gene Info, Disease Associations & Pathways

Gene Gene information from NCBI Gene database. Gene SNPs miRNA Gene ontology Other IDs Protein Pathways Associated diseases
Entrez ID	5257
Gene name	Phosphorylase kinase regulatory subunit beta
Gene symbol	PHKB
Synonyms (NCBI Gene)	-
Chromosome	16
Chromosome location	16q12.1
Summary	Phosphorylase kinase is a polymer of 16 subunits, four each of alpha, beta, gamma and delta. The alpha subunit includes the skeletal muscle and hepatic isoforms, encoded by two different genes. The beta subunit is the same in both the muscle and hepatic i

Show/Hide all (16)

SNP ID	Visualize variation	Clinical significance	Consequence
rs34667348	C>A,T	Uncertain-significance, pathogenic-likely-pathogenic, conflicting-interpretations-of-pathogenicity	Stop gained, missense variant, coding sequence variant
rs61494991	T>C	Conflicting-interpretations-of-pathogenicity	Synonymous variant, coding sequence variant
rs111734407	T>A,C	Pathogenic	Coding sequence variant, missense variant
rs121918021	T>A,G	Pathogenic	Coding sequence variant, stop gained
rs139738333	A>G	Conflicting-interpretations-of-pathogenicity, uncertain-significance	Coding sequence variant, missense variant
rs142381554	A>G	Conflicting-interpretations-of-pathogenicity	Coding sequence variant, missense variant
rs145166656	C>T	Pathogenic	Coding sequence variant, stop gained
rs149244943	C>A,T	Pathogenic	Coding sequence variant, stop gained, missense variant
rs199948078	G>A,T	Pathogenic	Stop gained, missense variant, coding sequence variant
rs201995780	G>T	Likely-benign, conflicting-interpretations-of-pathogenicity	Intron variant
rs371296953	G>A,T	Likely-pathogenic	Stop gained, missense variant, coding sequence variant
rs748262135	C>T	Likely-pathogenic	Stop gained, coding sequence variant
rs758004953	C>T	Uncertain-significance, pathogenic	Coding sequence variant, stop gained
rs797044442	A>G	Pathogenic	Splice acceptor variant
rs1273669177	C>T	Likely-pathogenic	Coding sequence variant, stop gained
rs1322527832	A>-	Pathogenic	Coding sequence variant, frameshift variant

168

Show/Hide all (168)

miRTarBase ID	miRNA	Experiments	Reference
MIRT000890	hsa-miR-15a-5p	Microarray	18362358
MIRT000889	hsa-miR-16-5p	Microarray	18362358
MIRT041947	hsa-miR-484	CLASH	23622248
MIRT496619	hsa-miR-1265	PAR-CLIP	22291592
MIRT496618	hsa-miR-4258	PAR-CLIP	22291592
MIRT444537	hsa-miR-100-3p	PAR-CLIP	22100165
MIRT444536	hsa-miR-4312	PAR-CLIP	22100165
MIRT444535	hsa-miR-6882-3p	PAR-CLIP	22100165
MIRT444537	hsa-miR-100-3p	PAR-CLIP	22100165
MIRT444536	hsa-miR-4312	PAR-CLIP	22100165
MIRT444535	hsa-miR-6882-3p	PAR-CLIP	22100165
MIRT496619	hsa-miR-1265	PAR-CLIP	22291592
MIRT496618	hsa-miR-4258	PAR-CLIP	22291592
MIRT444537	hsa-miR-100-3p	PAR-CLIP	22100165
MIRT444536	hsa-miR-4312	PAR-CLIP	22100165
MIRT444535	hsa-miR-6882-3p	PAR-CLIP	22100165
MIRT444537	hsa-miR-100-3p	PAR-CLIP	22100165
MIRT444536	hsa-miR-4312	PAR-CLIP	22100165
MIRT444535	hsa-miR-6882-3p	PAR-CLIP	22100165
MIRT1231631	hsa-miR-1178	CLIP-seq
MIRT1231632	hsa-miR-1185	CLIP-seq
MIRT1231633	hsa-miR-1254	CLIP-seq
MIRT1231634	hsa-miR-1273e	CLIP-seq
MIRT1231635	hsa-miR-146a	CLIP-seq
MIRT1231636	hsa-miR-146b-5p	CLIP-seq
MIRT1231637	hsa-miR-1587	CLIP-seq
MIRT1231638	hsa-miR-2277-3p	CLIP-seq
MIRT1231639	hsa-miR-3074-5p	CLIP-seq
MIRT1231640	hsa-miR-3116	CLIP-seq
MIRT1231641	hsa-miR-3159	CLIP-seq
MIRT1231642	hsa-miR-342-3p	CLIP-seq
MIRT1231643	hsa-miR-34c-3p	CLIP-seq
MIRT1231644	hsa-miR-3545-3p	CLIP-seq
MIRT1231645	hsa-miR-3605-5p	CLIP-seq
MIRT1231646	hsa-miR-3652	CLIP-seq
MIRT1231647	hsa-miR-3663-5p	CLIP-seq
MIRT1231648	hsa-miR-3679-5p	CLIP-seq
MIRT1231649	hsa-miR-370	CLIP-seq
MIRT1231650	hsa-miR-377	CLIP-seq
MIRT1231651	hsa-miR-378g	CLIP-seq
MIRT1231652	hsa-miR-4276	CLIP-seq
MIRT1231653	hsa-miR-4282	CLIP-seq
MIRT1231654	hsa-miR-4430	CLIP-seq
MIRT1231655	hsa-miR-4492	CLIP-seq
MIRT1231656	hsa-miR-4498	CLIP-seq
MIRT1231657	hsa-miR-4505	CLIP-seq
MIRT1231658	hsa-miR-4635	CLIP-seq
MIRT1231659	hsa-miR-4656	CLIP-seq
MIRT1231660	hsa-miR-4675	CLIP-seq
MIRT1231661	hsa-miR-4680-5p	CLIP-seq
MIRT1231662	hsa-miR-4716-5p	CLIP-seq
MIRT1231663	hsa-miR-4735-5p	CLIP-seq
MIRT1231664	hsa-miR-4741	CLIP-seq
MIRT1231665	hsa-miR-4775	CLIP-seq
MIRT1231666	hsa-miR-4794	CLIP-seq
MIRT1231667	hsa-miR-501-3p	CLIP-seq
MIRT1231668	hsa-miR-502-3p	CLIP-seq
MIRT1231669	hsa-miR-513a-3p	CLIP-seq
MIRT1231670	hsa-miR-548c-3p	CLIP-seq
MIRT1231671	hsa-miR-579	CLIP-seq
MIRT1231672	hsa-miR-587	CLIP-seq
MIRT1231673	hsa-miR-590-3p	CLIP-seq
MIRT1231674	hsa-miR-603	CLIP-seq
MIRT1231675	hsa-miR-647	CLIP-seq
MIRT1231676	hsa-miR-661	CLIP-seq
MIRT1231677	hsa-miR-664	CLIP-seq
MIRT1231678	hsa-miR-762	CLIP-seq
MIRT1231679	hsa-miR-767-5p	CLIP-seq
MIRT1231680	hsa-miR-922	CLIP-seq
MIRT1231681	hsa-miR-1207-5p	CLIP-seq
MIRT1231682	hsa-miR-138	CLIP-seq
MIRT1231683	hsa-miR-182	CLIP-seq
MIRT1231684	hsa-miR-1910	CLIP-seq
MIRT1231685	hsa-miR-3167	CLIP-seq
MIRT1231686	hsa-miR-34a	CLIP-seq
MIRT1231687	hsa-miR-34c-5p	CLIP-seq
MIRT1231688	hsa-miR-3650	CLIP-seq
MIRT1231689	hsa-miR-3923	CLIP-seq
MIRT1231690	hsa-miR-3944-5p	CLIP-seq
MIRT1231691	hsa-miR-4259	CLIP-seq
MIRT1231692	hsa-miR-4277	CLIP-seq
MIRT1231693	hsa-miR-4470	CLIP-seq
MIRT1231694	hsa-miR-449a	CLIP-seq
MIRT1231695	hsa-miR-449b	CLIP-seq
MIRT1231696	hsa-miR-455-3p	CLIP-seq
MIRT1231697	hsa-miR-4712-5p	CLIP-seq
MIRT1231698	hsa-miR-4715-5p	CLIP-seq
MIRT1231699	hsa-miR-4736	CLIP-seq
MIRT1231700	hsa-miR-4763-3p	CLIP-seq
MIRT1231701	hsa-miR-586	CLIP-seq
MIRT1231702	hsa-miR-604	CLIP-seq
MIRT1231675	hsa-miR-647	CLIP-seq
MIRT1231703	hsa-miR-656	CLIP-seq
MIRT1231704	hsa-miR-770-5p	CLIP-seq
MIRT1231705	hsa-miR-876-5p	CLIP-seq
MIRT1231631	hsa-miR-1178	CLIP-seq
MIRT2067992	hsa-miR-125a-3p	CLIP-seq
MIRT2067993	hsa-miR-1323	CLIP-seq
MIRT1231638	hsa-miR-2277-3p	CLIP-seq
MIRT2067994	hsa-miR-325	CLIP-seq
MIRT1231642	hsa-miR-342-3p	CLIP-seq
MIRT1231650	hsa-miR-377	CLIP-seq
MIRT1231689	hsa-miR-3923	CLIP-seq
MIRT2067995	hsa-miR-3934	CLIP-seq
MIRT2067996	hsa-miR-409-3p	CLIP-seq
MIRT2067997	hsa-miR-411	CLIP-seq
MIRT2067998	hsa-miR-4318	CLIP-seq
MIRT2067999	hsa-miR-4693-5p	CLIP-seq
MIRT1231662	hsa-miR-4716-5p	CLIP-seq
MIRT2068000	hsa-miR-4760-3p	CLIP-seq
MIRT2068001	hsa-miR-498	CLIP-seq
MIRT2068002	hsa-miR-501-5p	CLIP-seq
MIRT2068003	hsa-miR-548o	CLIP-seq
MIRT1231671	hsa-miR-579	CLIP-seq
MIRT1231672	hsa-miR-587	CLIP-seq
MIRT2068004	hsa-miR-607	CLIP-seq
MIRT2068005	hsa-miR-610	CLIP-seq
MIRT1231677	hsa-miR-664	CLIP-seq
MIRT2068006	hsa-miR-764	CLIP-seq
MIRT2068007	hsa-miR-892a	CLIP-seq
MIRT1231680	hsa-miR-922	CLIP-seq
MIRT2295426	hsa-miR-145	CLIP-seq
MIRT2295427	hsa-miR-3180-5p	CLIP-seq
MIRT1231662	hsa-miR-4716-5p	CLIP-seq
MIRT1231671	hsa-miR-579	CLIP-seq
MIRT1231677	hsa-miR-664	CLIP-seq
MIRT1231633	hsa-miR-1254	CLIP-seq
MIRT1231640	hsa-miR-3116	CLIP-seq
MIRT2465834	hsa-miR-3149	CLIP-seq
MIRT2067997	hsa-miR-411	CLIP-seq
MIRT1231663	hsa-miR-4735-5p	CLIP-seq
MIRT1231665	hsa-miR-4775	CLIP-seq
MIRT1231666	hsa-miR-4794	CLIP-seq
MIRT1231673	hsa-miR-590-3p	CLIP-seq
MIRT1231676	hsa-miR-661	CLIP-seq
MIRT1231681	hsa-miR-1207-5p	CLIP-seq
MIRT1231633	hsa-miR-1254	CLIP-seq
MIRT1231682	hsa-miR-138	CLIP-seq
MIRT2592995	hsa-miR-1976	CLIP-seq
MIRT1231640	hsa-miR-3116	CLIP-seq
MIRT2465834	hsa-miR-3149	CLIP-seq
MIRT1231685	hsa-miR-3167	CLIP-seq
MIRT1231688	hsa-miR-3650	CLIP-seq
MIRT1231690	hsa-miR-3944-5p	CLIP-seq
MIRT2067997	hsa-miR-411	CLIP-seq
MIRT1231663	hsa-miR-4735-5p	CLIP-seq
MIRT1231699	hsa-miR-4736	CLIP-seq
MIRT1231700	hsa-miR-4763-3p	CLIP-seq
MIRT1231665	hsa-miR-4775	CLIP-seq
MIRT1231666	hsa-miR-4794	CLIP-seq
MIRT2068001	hsa-miR-498	CLIP-seq
MIRT1231667	hsa-miR-501-3p	CLIP-seq
MIRT1231668	hsa-miR-502-3p	CLIP-seq
MIRT1231673	hsa-miR-590-3p	CLIP-seq
MIRT1231676	hsa-miR-661	CLIP-seq
MIRT1231679	hsa-miR-767-5p	CLIP-seq
MIRT1231705	hsa-miR-876-5p	CLIP-seq
MIRT1231633	hsa-miR-1254	CLIP-seq
MIRT2592995	hsa-miR-1976	CLIP-seq
MIRT1231640	hsa-miR-3116	CLIP-seq
MIRT2465834	hsa-miR-3149	CLIP-seq
MIRT2067997	hsa-miR-411	CLIP-seq
MIRT1231663	hsa-miR-4735-5p	CLIP-seq
MIRT1231665	hsa-miR-4775	CLIP-seq
MIRT1231666	hsa-miR-4794	CLIP-seq
MIRT2068001	hsa-miR-498	CLIP-seq
MIRT1231673	hsa-miR-590-3p	CLIP-seq
MIRT1231676	hsa-miR-661	CLIP-seq

Show/Hide all (11)

GO ID	Ontology	Definition	Evidence	Reference
GO:0005515	Function	Protein binding	IPI	21418524, 25051373, 25416956, 32296183
GO:0005516	Function	Calmodulin binding	IEA
GO:0005829	Component	Cytosol	TAS
GO:0005886	Component	Plasma membrane	IEA
GO:0005964	Component	Phosphorylase kinase complex	IBA
GO:0005964	Component	Phosphorylase kinase complex	IEA
GO:0005975	Process	Carbohydrate metabolic process	IEA
GO:0005977	Process	Glycogen metabolic process	IEA
GO:0005977	Process	Glycogen metabolic process	TAS	9402963
GO:0006091	Process	Generation of precursor metabolites and energy	TAS	9402963
GO:0016020	Component	Membrane	IEA

MIM	HGNC	e!Ensembl
172490	8927	ENSG00000102893

Q93100

Protein name

Phosphorylase b kinase regulatory subunit beta (Phosphorylase kinase subunit beta)

Protein function

Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I. The beta chain acts as a regulatory unit and modulates the activity of the holoenzyme in response to phosphorylation.

PDB

8JFK , 8JFL , 8XYA

Family and domains

Pfam

Accession	ID	Position in sequence	Description	Type
PF00723	Glyco_hydro_15	47 → 878	Glycosyl hydrolases family 15	Domain

Sequence

MAGAAGLTAEVSWKVLERRARTKRSGSVYEPLKSINLPRPDNETLWDKLDHYYRIVKSTL
LLYQSPTTGLFPTKTCGGDQKAKIQDSLYCAAGAWALALAYRRIDDDKGRTHELEHSAIK
CMRGILYCYMRQADKVQQFKQDPRPTTCLHSVFNVHTGDELLSYEEYGHLQINAVSLYLL
YLVEMISSGLQIIYNTDEVSFIQNLVFCVERVYRVPDFGVWERGSKYNNGSTELHSSSVG
LAKAALEAINGFNLFGNQGCSWSVIFVDLDAHNRNRQTLCSLLPRESRSHNTDAALLPCI
SYPAFALDDEVLFSQTLDKVVRKLKGKYGFKRFLRDGYRTSLEDPNRCYYKPAEIKLFDG
IECEFPIFFLYMMIDGVFRGNPKQVQEYQDLLTPVLHHTTEGYPVVPKYYYVPADFVEYE
KNNPGSQKRFPSNCGRDGKLFLWGQALYIIAKLLADELISPKDIDPVQRYVPLKDQRNVS
MRFSNQGPLENDLVVHVALIAESQRLQVFLNTYGIQTQTPQQVEPIQIWPQQELVKAYLQ
LGINEKLGLSGRPDRPIGCLGTSKIYRILGKTVVCYPIIFDLSDFYMSQDVFLLIDDIKN
ALQFIKQYWKMHGRPLFLVLIREDNIRGSRFNPILDMLAALKKGIIGGVKVHVDRLQTLI
SGAVVEQLDFLRISDTEELPEFKSFEELEPPKHSKVKRQSSTPSAPELGQQPDVNISEWK
DKPTHEILQKLNDCSCLASQAILLGILLKREGPNFITKEGTVSDHIERVYRRAGSQKLWL
AVRYGAAFTQKFSSSIAPHITTFLVHGKQVTLGAFGHEEEVISNPLSPRVIQNIIYYKCN
THDEREAVIQQELVIHIGWIISNNPELFSGMLKIRIGWIIHAMEYELQIRGGDKPALDLY
QLSPSEVKQLLLDILQPQQNGRCWLNRRQIDGSLNRTPTGFYDRVWQILERTPNGIIVAG
KHLPQQPTLSDMTMYEMNFSLLVEDTLGNIDQPQYRQIVVELLMVVSIVLERNPELEFQD
KVDLDRLVKEAFNEFQKDQSRLKEIEKQDDMTSFYNTPPLGKRGTCSYLTKAVMNLLLEG
EVKPNNDDPCLIS

Sequence length

1093

Interactions

View interactions

	KEGG		Reactome
	Calcium signaling pathway Insulin signaling pathway Glucagon signaling pathway		Glycogen breakdown (glycogenolysis)

1041

Show/Hide Causal Diseases (6)

Phenotype Name	Clinical Significance	dbSNP ID	RCV Accession
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Gastric cancer	Likely pathogenic; Pathogenic	rs34667348	RCV005887501
Glycogen phosphorylase kinase deficiency	Likely pathogenic; Pathogenic	rs535749057, rs761645932, rs563345848, rs768885733, rs1969551435, rs763501714, rs797044442, rs121918021, rs145166656, rs149244943	RCV005432798 RCV002509720 RCV004782913 RCV002469968 RCV002469970 RCV003226661 RCV003398507 RCV003993744 RCV003226306 RCV003226380
Glycogen storage disease IXb	Likely pathogenic; Pathogenic	rs535749057, rs777714363, rs2151739379, rs2151651792, rs2151737344, rs766592623, rs761645932, rs2151672494, rs1233197046, rs1292721679, rs964263812, rs563345848, rs768885733, rs755100317, rs2548337274 View all (64 more)	RCV001808058 RCV001378963 RCV001382780 RCV003130537 RCV001782614 RCV001970158 RCV001957103 RCV002030392 RCV002243545 RCV002250228 RCV003094124 RCV003096156 RCV003775504 RCV002628503 RCV002894421 RCV002993866 RCV003514620 RCV000778463 RCV003340783 RCV003514641 RCV003445322 RCV003448716 RCV003514688 RCV003514716 RCV003515447 RCV003514668 RCV003515280 RCV000014587 RCV000014588 RCV000014589 RCV000014590 RCV003515763 RCV003513857 RCV003515634 RCV003514030 RCV003516374 RCV003516601 RCV003514793 RCV003514993 RCV003515108 RCV003516029 RCV003516095 RCV003626879 RCV003626979 RCV003626947 RCV003627073 RCV003627082 RCV003627883 RCV003627891 RCV003627992 RCV003628141 RCV003628267 RCV003628377 RCV003626346 RCV003626173 RCV003626339 RCV003627164 RCV003627319 RCV003627500 RCV003627546 RCV003810987 RCV003828884 RCV003836025 RCV003852849 RCV003853285 RCV003849472 RCV003857374 RCV003862759 RCV003860923 RCV003854200 RCV003866109 RCV003875367 RCV003878130 RCV005055785 RCV005091002 RCV001206878 RCV003626639 RCV000779189 RCV000779190 RCV000779188 RCV002549289 RCV001293803
Melanoma	Pathogenic	rs1000274245	RCV005934982
PHKB-related disorder	Likely pathogenic; Pathogenic	rs535749057, rs764133797, rs756592483, rs121918021, rs149244943, rs371296953	RCV003416466 RCV003403028 RCV003408772 RCV004755735 RCV003892688 RCV004756034
See cases	Likely pathogenic; Pathogenic	rs964263812	RCV002253115

Show/Hide Unknown Diseases (17)

Phenotype Name	Clinical Significance	dbSNP ID	RCV Accession
Unknown Diseases with uncertain, conflicting, or no pathogenic evidence in ClinVar
Acute myeloid leukemia	Benign; Likely benign	rs56257827	RCV005892006
Cervical cancer	Benign; Likely benign; Uncertain significance	rs56257827, rs2506731651, rs9934849	RCV005892009 RCV005928403 RCV005894469
Clear cell carcinoma of kidney	Conflicting classifications of pathogenicity; Uncertain significance	rs117218785, rs201360702	RCV005900015 RCV005912491
Colon adenocarcinoma	Benign; Likely benign; Conflicting classifications of pathogenicity	rs56257827, rs117218785	RCV005892005 RCV005900013
Colorectal cancer	Benign; Likely benign; Uncertain significance	rs56257827, rs201360702	RCV005892011 RCV005912492
Familial cancer of breast	Conflicting classifications of pathogenicity	rs117218785	RCV005900012
Hepatocellular carcinoma	Benign; Likely benign	rs9934849	RCV005894467
Lung cancer	Benign; Likely benign; Conflicting classifications of pathogenicity	rs56257827, rs375970573, rs117218785	RCV005892017 RCV005934752 RCV005900019
Malignant lymphoma, large B-cell, diffuse	Benign; Likely benign	rs56257827	RCV005892010
Malignant tumor of esophagus	Benign; Likely benign; Conflicting classifications of pathogenicity; Uncertain significance	rs56257827, rs117218785, rs201360702	RCV005892007 RCV005900014 RCV005912490
Mitochondrial disease	Conflicting classifications of pathogenicity	rs760569328	RCV005626854
Nonpapillary renal cell carcinoma	Benign; Likely benign	rs56257827, rs9934849	RCV005892008 RCV005894468
Ovarian serous cystadenocarcinoma	Benign; Likely benign; Conflicting classifications of pathogenicity	rs56257827, rs375970573, rs117218785	RCV005892014 RCV005934751 RCV005900017
Sarcoma	Benign; Likely benign	rs56257827	RCV005892012
Thyroid cancer, nonmedullary, 1	Benign; Likely benign	rs56257827	RCV005892015
Uterine corpus endometrial carcinoma	Conflicting classifications of pathogenicity	rs117218785	RCV005900020
Uveal melanoma	Uncertain significance	rs759760999	RCV005868465

Show/Hide Text Mining Associations (11)

Disease Name	Relationship Type	References
Associations from Text MiningDisease associations identified through Pubtator
Carcinoma Hepatocellular	Inhibit	31754332
Carcinoma Squamous Cell	Associate	24929328
Glycogen Storage Disease Type II	Associate	38212860
Glycogen Storage Disease Type Ix	Associate	9326319
Glycogen Storage Disease Type VI	Associate	9326319
Hepatomegaly	Associate	38212860
Hereditary pancreatitis	Associate	37603299
Hirschsprung Disease	Associate	29093530
Lung Neoplasms	Associate	24929328
Neoplasms	Associate	25051373, 31754332
Neoplasms Cystic Mucinous and Serous	Associate	37848412

PHKB (phosphorylase kinase regulatory subunit beta)